EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0026492 (Gene tree)
Gene ID: -
Gene Symbol: Prpf38b
Alias: 1110021E09Rik
Full Name: PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 8942 bases
Position: chr3:107331988-107340929
Accession: 1914171
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0062403	PRP38	PF03371.15	3e-57	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0062403	-	3006	-	MGP_SPRETEiJ_P0062403	544 (aa)	-	-
MGP_SPRETEiJ_T0062402	-	3030	-	MGP_SPRETEiJ_P0062402	94 (aa)	-	UPI000620AA44
MGP_SPRETEiJ_T0062405	-	1474	-	MGP_SPRETEiJ_P0062405	450 (aa)	-	-
MGP_SPRETEiJ_T0062404	-	2515	-	MGP_SPRETEiJ_P0062404	182 (aa)	-	UPI000620ABEF
MGP_SPRETEiJ_T0062407	-	556	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0062406	-	975	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0062409	-	2090	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0062408	-	531	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0062410	-	3806	-	-	- (aa)	-	-

Gene Model

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Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0026492's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0026492	Prpf38b	99	96.774	ENSG00000134186	PRPF38B	100	96.335	Homo_sapiens
MGP_SPRETEiJ_G0026492	Prpf38b	99	96.774	ENSANAG00000028333	PRPF38B	100	96.335	Aotus_nancymaae
MGP_SPRETEiJ_G0026492	Prpf38b	100	94.972	ENSCGRG00001018841	Prpf38b	100	95.430	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0026492	Prpf38b	83	95.575	ENSCGRG00000002972	Prpf38b	100	95.575	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0026492	Prpf38b	79	89.401	ENSDORG00000025236	-	97	89.524	Dipodomys_ordii
MGP_SPRETEiJ_G0026492	Prpf38b	53	88.000	ENSEBUG00000001683	-	58	72.659	Eptatretus_burgeri
MGP_SPRETEiJ_G0026492	Prpf38b	100	94.624	ENSEEUG00000014328	PRPF38B	100	90.293	Erinaceus_europaeus
MGP_SPRETEiJ_G0026492	Prpf38b	100	89.762	ENSFDAG00000021009	PRPF38B	100	89.762	Fukomys_damarensis
MGP_SPRETEiJ_G0026492	Prpf38b	99	96.774	ENSGGOG00000011288	PRPF38B	100	96.335	Gorilla_gorilla
MGP_SPRETEiJ_G0026492	Prpf38b	89	93.617	ENSMGAG00000006188	PRPF38B	100	85.141	Meleagris_gallopavo
MGP_SPRETEiJ_G0026492	Prpf38b	99	98.925	ENSMAUG00000019131	Prpf38b	100	95.780	Mesocricetus_auratus
MGP_SPRETEiJ_G0026492	Prpf38b	100	99.451	MGP_CAROLIEiJ_G0025542	Prpf38b	100	99.451	Mus_caroli
MGP_SPRETEiJ_G0026492	Prpf38b	100	100.000	ENSMUSG00000027881	Prpf38b	100	100.000	Mus_musculus
MGP_SPRETEiJ_G0026492	Prpf38b	100	100.000	MGP_PahariEiJ_G0026988	Prpf38b	100	100.000	Mus_pahari
MGP_SPRETEiJ_G0026492	Prpf38b	99	96.774	ENSNLEG00000001645	-	100	96.335	Nomascus_leucogenys
MGP_SPRETEiJ_G0026492	Prpf38b	100	87.569	ENSNLEG00000030268	-	100	84.278	Nomascus_leucogenys
MGP_SPRETEiJ_G0026492	Prpf38b	99	96.774	ENSPPAG00000001260	PRPF38B	100	96.335	Pan_paniscus
MGP_SPRETEiJ_G0026492	Prpf38b	99	94.737	ENSPPRG00000002116	PRPF38B	98	97.354	Panthera_pardus
MGP_SPRETEiJ_G0026492	Prpf38b	99	96.774	ENSPTRG00000001032	PRPF38B	100	96.335	Pan_troglodytes
MGP_SPRETEiJ_G0026492	Prpf38b	100	97.849	ENSPANG00000007560	PRPF38B	100	96.859	Papio_anubis
MGP_SPRETEiJ_G0026492	Prpf38b	99	77.083	ENSPCIG00000024841	PRPF38B	100	87.636	Phascolarctos_cinereus
MGP_SPRETEiJ_G0026492	Prpf38b	99	94.737	ENSPVAG00000011929	-	100	91.606	Pteropus_vampyrus
MGP_SPRETEiJ_G0026492	Prpf38b	100	92.029	ENSSARG00000012818	-	100	91.091	Sorex_araneus
MGP_SPRETEiJ_G0026492	Prpf38b	99	73.958	ENSTGUG00000004594	-	71	88.110	Taeniopygia_guttata
MGP_SPRETEiJ_G0026492	Prpf38b	99	96.809	ENSUAMG00000023817	PRPF38B	100	89.071	Ursus_americanus