EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0026505 (Gene tree)
Gene ID: -
Gene Symbol: Rnpc3
Alias: 2810441O16Rik|C030014B17Rik
Full Name: RNA-binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 26302 bases
Position: chr3:112027380-112053681
Accession: 1914475
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0062458	RRM_1	PF00076.22	4.3e-18	1	2
MGP_SPRETEiJ_P0062458	RRM_1	PF00076.22	4.3e-18	2	2
MGP_SPRETEiJ_P0062460	RRM_1	PF00076.22	4.5e-18	1	2
MGP_SPRETEiJ_P0062460	RRM_1	PF00076.22	4.5e-18	2	2
MGP_SPRETEiJ_P0062457	RRM_1	PF00076.22	4.5e-18	1	2
MGP_SPRETEiJ_P0062457	RRM_1	PF00076.22	4.5e-18	2	2
MGP_SPRETEiJ_P0062459	RRM_1	PF00076.22	4.5e-18	1	2
MGP_SPRETEiJ_P0062459	RRM_1	PF00076.22	4.5e-18	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0062459	-	1838	-	MGP_SPRETEiJ_P0062459	514 (aa)	-	-
MGP_SPRETEiJ_T0062458	-	1790	-	MGP_SPRETEiJ_P0062458	507 (aa)	-	-
MGP_SPRETEiJ_T0062462	-	670	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0062463	-	423	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0062457	-	3896	-	MGP_SPRETEiJ_P0062457	514 (aa)	-	-
MGP_SPRETEiJ_T0062461	-	406	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0062460	-	2615	-	MGP_SPRETEiJ_P0062460	513 (aa)	-	-
MGP_SPRETEiJ_T0062464	-	1527	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0026505's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0026505's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0026505	Rnpc3	100	88.780	ENSG00000185946	RNPC3	100	90.580	Homo_sapiens
MGP_SPRETEiJ_G0026505	Rnpc3	96	56.364	ENSAPOG00000017371	rnpc3	97	56.364	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0026505	Rnpc3	99	88.189	ENSAMEG00000001694	RNPC3	99	87.476	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0026505	Rnpc3	96	52.906	ENSACIG00000021043	rnpc3	97	52.906	Amphilophus_citrinellus
MGP_SPRETEiJ_G0026505	Rnpc3	96	56.200	ENSAOCG00000014052	rnpc3	95	56.200	Amphiprion_ocellaris
MGP_SPRETEiJ_G0026505	Rnpc3	96	56.000	ENSAPEG00000008739	rnpc3	95	56.000	Amphiprion_percula
MGP_SPRETEiJ_G0026505	Rnpc3	96	54.600	ENSATEG00000021263	rnpc3	97	54.600	Anabas_testudineus
MGP_SPRETEiJ_G0026505	Rnpc3	89	68.212	ENSAPLG00000015605	RNPC3	99	68.433	Anas_platyrhynchos
MGP_SPRETEiJ_G0026505	Rnpc3	96	67.409	ENSACAG00000002029	RNPC3	96	68.200	Anolis_carolinensis
MGP_SPRETEiJ_G0026505	Rnpc3	100	87.791	ENSANAG00000019950	RNPC3	99	87.791	Aotus_nancymaae
MGP_SPRETEiJ_G0026505	Rnpc3	96	54.970	ENSACLG00000014702	rnpc3	96	51.670	Astatotilapia_calliptera
MGP_SPRETEiJ_G0026505	Rnpc3	96	56.851	ENSAMXG00000033372	rnpc3	96	55.556	Astyanax_mexicanus
MGP_SPRETEiJ_G0026505	Rnpc3	100	89.567	ENSBTAG00000019091	RNPC3	99	89.320	Bos_taurus
MGP_SPRETEiJ_G0026505	Rnpc3	100	83.527	ENSCJAG00000035686	RNPC3	99	83.915	Callithrix_jacchus
MGP_SPRETEiJ_G0026505	Rnpc3	100	87.234	ENSCAFG00000019972	RNPC3	99	87.234	Canis_familiaris
MGP_SPRETEiJ_G0026505	Rnpc3	100	87.427	ENSCAFG00020011300	RNPC3	99	87.427	Canis_lupus_dingo
MGP_SPRETEiJ_G0026505	Rnpc3	100	89.194	ENSCHIG00000020361	RNPC3	99	88.953	Capra_hircus
MGP_SPRETEiJ_G0026505	Rnpc3	100	85.827	ENSTSYG00000030256	RNPC3	99	85.825	Carlito_syrichta
MGP_SPRETEiJ_G0026505	Rnpc3	85	75.283	ENSCAPG00000013600	RNPC3	98	75.638	Cavia_aperea
MGP_SPRETEiJ_G0026505	Rnpc3	100	87.623	ENSCPOG00000031638	RNPC3	99	87.016	Cavia_porcellus
MGP_SPRETEiJ_G0026505	Rnpc3	100	87.984	ENSCCAG00000024301	RNPC3	99	87.984	Cebus_capucinus
MGP_SPRETEiJ_G0026505	Rnpc3	99	88.189	ENSCATG00000002086	RNPC3	99	87.961	Cercocebus_atys
MGP_SPRETEiJ_G0026505	Rnpc3	99	67.723	ENSCATG00000035930	-	98	67.129	Cercocebus_atys
MGP_SPRETEiJ_G0026505	Rnpc3	100	84.252	ENSCLAG00000005169	RNPC3	99	86.408	Chinchilla_lanigera
MGP_SPRETEiJ_G0026505	Rnpc3	99	87.992	ENSCSAG00000001519	RNPC3	99	87.767	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0026505	Rnpc3	99	68.442	ENSCPBG00000028311	RNPC3	99	67.823	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0026505	Rnpc3	96	38.039	ENSCING00000021276	-	100	38.171	Ciona_intestinalis
MGP_SPRETEiJ_G0026505	Rnpc3	99	87.992	ENSCANG00000031444	RNPC3	99	87.767	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0026505	Rnpc3	100	93.504	ENSCGRG00001019276	Rnpc3	100	93.204	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0026505	Rnpc3	89	93.348	ENSCGRG00000000053	Rnpc3	100	93.348	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0026505	Rnpc3	96	54.878	ENSCSEG00000013475	rnpc3	96	54.878	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0026505	Rnpc3	96	54.672	ENSCVAG00000002645	rnpc3	97	51.149	Cyprinodon_variegatus
MGP_SPRETEiJ_G0026505	Rnpc3	96	56.349	ENSDARG00000011247	rnpc3	93	63.006	Danio_rerio
MGP_SPRETEiJ_G0026505	Rnpc3	100	86.220	ENSDNOG00000044555	-	99	85.825	Dasypus_novemcinctus
MGP_SPRETEiJ_G0026505	Rnpc3	100	86.220	ENSDNOG00000047498	-	99	85.825	Dasypus_novemcinctus
MGP_SPRETEiJ_G0026505	Rnpc3	100	86.640	ENSDORG00000027343	Rnpc3	99	86.628	Dipodomys_ordii
MGP_SPRETEiJ_G0026505	Rnpc3	96	47.817	ENSEBUG00000002068	rnpc3	97	46.322	Eptatretus_burgeri
MGP_SPRETEiJ_G0026505	Rnpc3	100	87.209	ENSEASG00005015957	RNPC3	99	87.209	Equus_asinus_asinus
MGP_SPRETEiJ_G0026505	Rnpc3	100	87.209	ENSECAG00000021148	RNPC3	99	87.209	Equus_caballus
MGP_SPRETEiJ_G0026505	Rnpc3	97	54.864	ENSELUG00000002264	rnpc3	97	53.626	Esox_lucius
MGP_SPRETEiJ_G0026505	Rnpc3	100	87.597	ENSFCAG00000024312	RNPC3	99	87.597	Felis_catus
MGP_SPRETEiJ_G0026505	Rnpc3	89	70.640	ENSFALG00000002580	RNPC3	99	71.635	Ficedula_albicollis
MGP_SPRETEiJ_G0026505	Rnpc3	100	87.819	ENSFDAG00000019948	RNPC3	100	87.597	Fukomys_damarensis
MGP_SPRETEiJ_G0026505	Rnpc3	97	50.503	ENSFHEG00000020647	rnpc3	98	48.062	Fundulus_heteroclitus
MGP_SPRETEiJ_G0026505	Rnpc3	96	54.545	ENSGMOG00000019213	rnpc3	95	52.918	Gadus_morhua
MGP_SPRETEiJ_G0026505	Rnpc3	99	68.911	ENSGALG00000005162	RNPC3	89	70.040	Gallus_gallus
MGP_SPRETEiJ_G0026505	Rnpc3	96	53.614	ENSGAFG00000017236	rnpc3	96	50.579	Gambusia_affinis
MGP_SPRETEiJ_G0026505	Rnpc3	96	55.010	ENSGACG00000002048	rnpc3	96	51.830	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0026505	Rnpc3	97	69.153	ENSGAGG00000008438	RNPC3	96	69.428	Gopherus_agassizii
MGP_SPRETEiJ_G0026505	Rnpc3	99	73.663	ENSGGOG00000026201	-	99	72.994	Gorilla_gorilla
MGP_SPRETEiJ_G0026505	Rnpc3	79	78.947	ENSHBUG00000015966	rnpc3	82	78.947	Haplochromis_burtoni
MGP_SPRETEiJ_G0026505	Rnpc3	100	87.426	ENSHGLG00000001708	RNPC3	99	87.209	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0026505	Rnpc3	100	87.426	ENSHGLG00100003005	RNPC3	99	87.209	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0026505	Rnpc3	97	54.819	ENSHCOG00000017135	rnpc3	97	54.819	Hippocampus_comes
MGP_SPRETEiJ_G0026505	Rnpc3	96	55.400	ENSIPUG00000002916	rnpc3	97	54.365	Ictalurus_punctatus
MGP_SPRETEiJ_G0026505	Rnpc3	100	87.623	ENSSTOG00000025020	RNPC3	99	87.209	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0026505	Rnpc3	100	85.078	ENSJJAG00000010203	Rnpc3	100	86.240	Jaculus_jaculus
MGP_SPRETEiJ_G0026505	Rnpc3	96	54.545	ENSKMAG00000017358	rnpc3	97	52.381	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0026505	Rnpc3	96	55.533	ENSLBEG00000024901	rnpc3	95	55.533	Labrus_bergylta
MGP_SPRETEiJ_G0026505	Rnpc3	96	62.933	ENSLACG00000005720	RNPC3	90	63.083	Latimeria_chalumnae
MGP_SPRETEiJ_G0026505	Rnpc3	96	59.305	ENSLOCG00000007986	rnpc3	96	61.633	Lepisosteus_oculatus
MGP_SPRETEiJ_G0026505	Rnpc3	100	86.240	ENSLAFG00000032342	RNPC3	100	86.240	Loxodonta_africana
MGP_SPRETEiJ_G0026505	Rnpc3	99	64.752	ENSMFAG00000002917	-	99	65.437	Macaca_fascicularis
MGP_SPRETEiJ_G0026505	Rnpc3	99	87.992	ENSMFAG00000002004	RNPC3	99	87.767	Macaca_fascicularis
MGP_SPRETEiJ_G0026505	Rnpc3	99	87.992	ENSMMUG00000018039	RNPC3	99	87.767	Macaca_mulatta
MGP_SPRETEiJ_G0026505	Rnpc3	84	80.751	ENSMMUG00000002098	-	98	64.286	Macaca_mulatta
MGP_SPRETEiJ_G0026505	Rnpc3	99	60.079	ENSMNEG00000029209	-	98	63.834	Macaca_nemestrina
MGP_SPRETEiJ_G0026505	Rnpc3	99	83.071	ENSMNEG00000033950	RNPC3	99	82.913	Macaca_nemestrina
MGP_SPRETEiJ_G0026505	Rnpc3	99	88.189	ENSMLEG00000033628	RNPC3	99	87.961	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0026505	Rnpc3	99	66.471	ENSMLEG00000034644	-	98	66.275	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0026505	Rnpc3	96	50.895	ENSMAMG00000007496	rnpc3	97	48.162	Mastacembelus_armatus
MGP_SPRETEiJ_G0026505	Rnpc3	96	54.365	ENSMZEG00005020233	rnpc3	97	51.154	Maylandia_zebra
MGP_SPRETEiJ_G0026505	Rnpc3	89	67.679	ENSMGAG00000006381	RNPC3	99	68.764	Meleagris_gallopavo
MGP_SPRETEiJ_G0026505	Rnpc3	98	94.578	ENSMAUG00000001358	Rnpc3	100	93.981	Mesocricetus_auratus
MGP_SPRETEiJ_G0026505	Rnpc3	100	88.998	ENSMICG00000029591	RNPC3	99	88.760	Microcebus_murinus
MGP_SPRETEiJ_G0026505	Rnpc3	98	92.585	ENSMOCG00000013423	Rnpc3	100	92.070	Microtus_ochrogaster
MGP_SPRETEiJ_G0026505	Rnpc3	96	52.033	ENSMMOG00000005309	rnpc3	97	50.598	Mola_mola
MGP_SPRETEiJ_G0026505	Rnpc3	100	77.362	ENSMODG00000002946	RNPC3	99	77.362	Monodelphis_domestica
MGP_SPRETEiJ_G0026505	Rnpc3	96	52.705	ENSMALG00000015471	rnpc3	97	52.705	Monopterus_albus
MGP_SPRETEiJ_G0026505	Rnpc3	100	98.638	MGP_CAROLIEiJ_G0025555	Rnpc3	100	98.638	Mus_caroli
MGP_SPRETEiJ_G0026505	Rnpc3	100	99.416	ENSMUSG00000027981	Rnpc3	100	99.416	Mus_musculus
MGP_SPRETEiJ_G0026505	Rnpc3	100	98.054	MGP_PahariEiJ_G0027001	Rnpc3	100	98.054	Mus_pahari
MGP_SPRETEiJ_G0026505	Rnpc3	100	87.016	ENSMPUG00000007349	RNPC3	99	87.016	Mustela_putorius_furo
MGP_SPRETEiJ_G0026505	Rnpc3	100	85.855	ENSMLUG00000028743	RNPC3	99	85.659	Myotis_lucifugus
MGP_SPRETEiJ_G0026505	Rnpc3	100	90.373	ENSNGAG00000010939	Rnpc3	99	90.430	Nannospalax_galili
MGP_SPRETEiJ_G0026505	Rnpc3	96	54.767	ENSNBRG00000012196	rnpc3	93	51.473	Neolamprologus_brichardi
MGP_SPRETEiJ_G0026505	Rnpc3	100	88.583	ENSNLEG00000012013	RNPC3	99	88.350	Nomascus_leucogenys
MGP_SPRETEiJ_G0026505	Rnpc3	100	84.660	ENSODEG00000007612	RNPC3	99	84.660	Octodon_degus
MGP_SPRETEiJ_G0026505	Rnpc3	96	55.375	ENSONIG00000004770	rnpc3	99	55.578	Oreochromis_niloticus
MGP_SPRETEiJ_G0026505	Rnpc3	91	73.333	ENSOANG00000008220	RNPC3	99	74.624	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0026505	Rnpc3	100	87.016	ENSOCUG00000004016	RNPC3	99	87.016	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0026505	Rnpc3	97	52.716	ENSORLG00000005694	rnpc3	97	53.614	Oryzias_latipes
MGP_SPRETEiJ_G0026505	Rnpc3	97	53.320	ENSORLG00020005513	rnpc3	97	54.618	Oryzias_latipes_hni
MGP_SPRETEiJ_G0026505	Rnpc3	97	52.918	ENSORLG00015002179	rnpc3	97	54.637	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0026505	Rnpc3	97	53.737	ENSOMEG00000017737	rnpc3	97	55.242	Oryzias_melastigma
MGP_SPRETEiJ_G0026505	Rnpc3	100	87.791	ENSOGAG00000026182	RNPC3	99	87.791	Otolemur_garnettii
MGP_SPRETEiJ_G0026505	Rnpc3	100	88.998	ENSOARG00000018719	RNPC3	99	88.760	Ovis_aries
MGP_SPRETEiJ_G0026505	Rnpc3	100	88.235	ENSPPAG00000037459	RNPC3	99	88.008	Pan_paniscus
MGP_SPRETEiJ_G0026505	Rnpc3	99	75.446	ENSPPAG00000030278	-	99	74.755	Pan_paniscus
MGP_SPRETEiJ_G0026505	Rnpc3	100	87.209	ENSPPRG00000020246	RNPC3	99	87.209	Panthera_pardus
MGP_SPRETEiJ_G0026505	Rnpc3	99	87.747	ENSPTIG00000009887	RNPC3	99	87.747	Panthera_tigris_altaica
MGP_SPRETEiJ_G0026505	Rnpc3	99	73.518	ENSPTRG00000044227	-	98	73.518	Pan_troglodytes
MGP_SPRETEiJ_G0026505	Rnpc3	100	88.409	ENSPTRG00000033902	RNPC3	99	88.178	Pan_troglodytes
MGP_SPRETEiJ_G0026505	Rnpc3	99	69.625	ENSPANG00000029957	-	99	69.231	Papio_anubis
MGP_SPRETEiJ_G0026505	Rnpc3	99	88.363	ENSPANG00000012137	RNPC3	99	88.132	Papio_anubis
MGP_SPRETEiJ_G0026505	Rnpc3	95	53.924	ENSPKIG00000008828	rnpc3	95	50.588	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0026505	Rnpc3	64	67.879	ENSPSIG00000007396	RNPC3	99	67.879	Pelodiscus_sinensis
MGP_SPRETEiJ_G0026505	Rnpc3	94	51.943	ENSPMGG00000011742	rnpc3	95	50.505	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0026505	Rnpc3	90	92.105	ENSPEMG00000020112	Rnpc3	100	92.905	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0026505	Rnpc3	98	45.315	ENSPMAG00000003778	rnpc3	98	45.124	Petromyzon_marinus
MGP_SPRETEiJ_G0026505	Rnpc3	100	78.150	ENSPCIG00000004415	-	99	78.150	Phascolarctos_cinereus
MGP_SPRETEiJ_G0026505	Rnpc3	96	53.614	ENSPFOG00000009895	rnpc3	97	50.584	Poecilia_formosa
MGP_SPRETEiJ_G0026505	Rnpc3	96	53.614	ENSPLAG00000012023	rnpc3	97	50.584	Poecilia_latipinna
MGP_SPRETEiJ_G0026505	Rnpc3	96	53.815	ENSPMEG00000003663	rnpc3	97	50.778	Poecilia_mexicana
MGP_SPRETEiJ_G0026505	Rnpc3	97	52.767	ENSPREG00000010206	rnpc3	97	50.485	Poecilia_reticulata
MGP_SPRETEiJ_G0026505	Rnpc3	84	84.309	ENSPPYG00000001102	RNPC3	99	84.101	Pongo_abelii
MGP_SPRETEiJ_G0026505	Rnpc3	96	54.767	ENSPNYG00000020603	rnpc3	96	54.767	Pundamilia_nyererei
MGP_SPRETEiJ_G0026505	Rnpc3	100	94.882	ENSRNOG00000017310	Rnpc3	100	94.563	Rattus_norvegicus
MGP_SPRETEiJ_G0026505	Rnpc3	99	83.104	ENSRBIG00000043897	RNPC3	99	82.946	Rhinopithecus_bieti
MGP_SPRETEiJ_G0026505	Rnpc3	99	88.583	ENSRROG00000032334	RNPC3	99	88.350	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0026505	Rnpc3	100	88.155	ENSSBOG00000024473	RNPC3	98	89.568	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0026505	Rnpc3	100	77.362	ENSSHAG00000011859	RNPC3	99	77.362	Sarcophilus_harrisii
MGP_SPRETEiJ_G0026505	Rnpc3	97	59.438	ENSSFOG00015013055	rnpc3	99	56.055	Scleropages_formosus
MGP_SPRETEiJ_G0026505	Rnpc3	96	52.400	ENSSMAG00000020346	rnpc3	97	51.262	Scophthalmus_maximus
MGP_SPRETEiJ_G0026505	Rnpc3	96	54.326	ENSSDUG00000006600	rnpc3	96	51.267	Seriola_dumerili
MGP_SPRETEiJ_G0026505	Rnpc3	96	54.326	ENSSLDG00000007979	rnpc3	96	51.072	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0026505	Rnpc3	98	64.329	ENSSPUG00000003872	-	93	64.729	Sphenodon_punctatus
MGP_SPRETEiJ_G0026505	Rnpc3	96	69.168	ENSSPUG00000008539	-	98	67.761	Sphenodon_punctatus
MGP_SPRETEiJ_G0026505	Rnpc3	96	55.556	ENSSPAG00000005633	rnpc3	97	53.373	Stegastes_partitus
MGP_SPRETEiJ_G0026505	Rnpc3	100	87.008	ENSSSCG00000037254	RNPC3	99	88.738	Sus_scrofa
MGP_SPRETEiJ_G0026505	Rnpc3	89	70.485	ENSTGUG00000004795	-	99	70.485	Taeniopygia_guttata
MGP_SPRETEiJ_G0026505	Rnpc3	96	54.672	ENSTNIG00000018963	rnpc3	97	54.672	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0026505	Rnpc3	99	88.757	ENSUMAG00000007775	RNPC3	99	88.757	Ursus_maritimus
MGP_SPRETEiJ_G0026505	Rnpc3	100	87.427	ENSVVUG00000000331	RNPC3	99	87.427	Vulpes_vulpes
MGP_SPRETEiJ_G0026505	Rnpc3	100	48.664	ENSXETG00000025027	rnpc3	99	48.824	Xenopus_tropicalis
MGP_SPRETEiJ_G0026505	Rnpc3	96	52.673	ENSXCOG00000005013	rnpc3	97	49.711	Xiphophorus_couchianus
MGP_SPRETEiJ_G0026505	Rnpc3	96	53.094	ENSXMAG00000006495	rnpc3	97	50.577	Xiphophorus_maculatus