EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0026727 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: D4Ertd800e|Ncoa6ip|Pimt
Full Name: -
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 41310 bases
Position: chr4:39698-81007
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0063719	Methyltransf_15	PF09445.10	6.6e-41	1	1
MGP_SPRETEiJ_P0063719	UPF0020	PF01170.18	2.4e-05	1	1
MGP_SPRETEiJ_P0063719	Met_10	PF02475.16	4.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0063719	-	4305	-	MGP_SPRETEiJ_P0063719	852 (aa)	-	-
MGP_SPRETEiJ_T0063723	-	687	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0063722	-	517	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0063721	-	544	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0063720	-	669	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0026727's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0026727's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0026727	-	60	96.809	MGP_SPRETEiJ_G0026726	-	98	96.809

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0026727	-	99	73.536	ENSG00000137574	TGS1	99	73.536	Homo_sapiens
MGP_SPRETEiJ_G0026727	-	65	36.650	ENSAPOG00000004321	-	99	36.762	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0026727	-	99	71.948	ENSAMEG00000001781	TGS1	99	71.963	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0026727	-	96	37.326	ENSAOCG00000022799	lyn	96	37.775	Amphiprion_ocellaris
MGP_SPRETEiJ_G0026727	-	76	41.014	ENSAPEG00000019723	TGS1	96	41.134	Amphiprion_percula
MGP_SPRETEiJ_G0026727	-	91	33.780	ENSATEG00000005927	lyn	91	34.149	Anabas_testudineus
MGP_SPRETEiJ_G0026727	-	77	48.798	ENSAPLG00000006073	-	100	49.145	Anas_platyrhynchos
MGP_SPRETEiJ_G0026727	-	98	46.968	ENSACAG00000017988	TGS1	92	47.947	Anolis_carolinensis
MGP_SPRETEiJ_G0026727	-	99	67.769	ENSANAG00000035525	TGS1	99	68.241	Aotus_nancymaae
MGP_SPRETEiJ_G0026727	-	97	38.830	ENSACLG00000000261	lyn	98	39.130	Astatotilapia_calliptera
MGP_SPRETEiJ_G0026727	-	97	38.679	ENSAMXG00000014086	lyn	97	39.218	Astyanax_mexicanus
MGP_SPRETEiJ_G0026727	-	99	66.432	ENSBTAG00000005898	TGS1	99	66.823	Bos_taurus
MGP_SPRETEiJ_G0026727	-	99	71.780	ENSCJAG00000016657	TGS1	98	72.014	Callithrix_jacchus
MGP_SPRETEiJ_G0026727	-	99	70.540	ENSCAFG00000007011	TGS1	99	70.678	Canis_familiaris
MGP_SPRETEiJ_G0026727	-	99	69.565	ENSCAFG00020015485	TGS1	99	69.708	Canis_lupus_dingo
MGP_SPRETEiJ_G0026727	-	99	65.268	ENSCHIG00000013976	TGS1	99	65.658	Capra_hircus
MGP_SPRETEiJ_G0026727	-	99	72.450	ENSTSYG00000000171	TGS1	99	72.450	Carlito_syrichta
MGP_SPRETEiJ_G0026727	-	95	65.968	ENSCAPG00000013732	TGS1	99	65.845	Cavia_aperea
MGP_SPRETEiJ_G0026727	-	99	69.213	ENSCPOG00000009713	TGS1	99	69.213	Cavia_porcellus
MGP_SPRETEiJ_G0026727	-	99	72.664	ENSCCAG00000030476	TGS1	98	72.664	Cebus_capucinus
MGP_SPRETEiJ_G0026727	-	99	72.951	ENSCATG00000035375	TGS1	99	72.951	Cercocebus_atys
MGP_SPRETEiJ_G0026727	-	99	70.505	ENSCLAG00000009468	TGS1	99	70.858	Chinchilla_lanigera
MGP_SPRETEiJ_G0026727	-	92	70.338	ENSCSAG00000014611	TGS1	99	70.338	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0026727	-	99	67.719	ENSCHOG00000001462	TGS1	99	67.836	Choloepus_hoffmanni
MGP_SPRETEiJ_G0026727	-	98	51.239	ENSCPBG00000004958	TGS1	99	53.175	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0026727	-	99	72.717	ENSCANG00000041389	TGS1	99	72.717	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0026727	-	100	82.827	ENSCGRG00001019470	Tgs1	100	82.477	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0026727	-	100	82.019	ENSCGRG00000008981	Tgs1	100	82.367	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0026727	-	97	37.718	ENSDARG00000107511	lyn	99	72.778	Danio_rerio
MGP_SPRETEiJ_G0026727	-	99	69.042	ENSDNOG00000008353	TGS1	99	68.925	Dasypus_novemcinctus
MGP_SPRETEiJ_G0026727	-	99	72.931	ENSDORG00000012484	Tgs1	99	72.931	Dipodomys_ordii
MGP_SPRETEiJ_G0026727	-	80	67.544	ENSETEG00000005126	TGS1	85	67.544	Echinops_telfairi
MGP_SPRETEiJ_G0026727	-	92	70.980	ENSEASG00005016371	TGS1	95	70.477	Equus_asinus_asinus
MGP_SPRETEiJ_G0026727	-	99	72.196	ENSECAG00000019399	TGS1	99	72.079	Equus_caballus
MGP_SPRETEiJ_G0026727	-	69	94.828	ENSEEUG00000001735	TGS1	70	94.828	Erinaceus_europaeus
MGP_SPRETEiJ_G0026727	-	99	70.975	ENSFCAG00000011478	TGS1	99	70.994	Felis_catus
MGP_SPRETEiJ_G0026727	-	88	48.949	ENSFALG00000010249	TGS1	99	49.134	Ficedula_albicollis
MGP_SPRETEiJ_G0026727	-	99	72.706	ENSFDAG00000011405	TGS1	99	72.824	Fukomys_damarensis
MGP_SPRETEiJ_G0026727	-	98	48.098	ENSGALG00000015340	TGS1	97	48.858	Gallus_gallus
MGP_SPRETEiJ_G0026727	-	98	51.512	ENSGAGG00000019590	TGS1	99	52.856	Gopherus_agassizii
MGP_SPRETEiJ_G0026727	-	99	73.653	ENSGGOG00000008624	TGS1	99	73.653	Gorilla_gorilla
MGP_SPRETEiJ_G0026727	-	69	37.541	ENSHBUG00000003518	lyn	100	38.197	Haplochromis_burtoni
MGP_SPRETEiJ_G0026727	-	86	81.159	ENSHGLG00000000284	TGS1	98	81.159	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0026727	-	98	38.524	ENSHCOG00000014161	lyn	99	38.946	Hippocampus_comes
MGP_SPRETEiJ_G0026727	-	98	38.200	ENSIPUG00000002294	tgs1	99	39.207	Ictalurus_punctatus
MGP_SPRETEiJ_G0026727	-	99	72.353	ENSSTOG00000009597	TGS1	99	72.353	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0026727	-	99	72.071	ENSJJAG00000016239	Tgs1	100	71.479	Jaculus_jaculus
MGP_SPRETEiJ_G0026727	-	96	37.762	ENSKMAG00000019371	-	97	37.967	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0026727	-	98	37.671	ENSLBEG00000027341	-	98	37.785	Labrus_bergylta
MGP_SPRETEiJ_G0026727	-	98	44.248	ENSLACG00000008074	TGS1	100	44.013	Latimeria_chalumnae
MGP_SPRETEiJ_G0026727	-	98	41.053	ENSLOCG00000005492	lyn	99	41.637	Lepisosteus_oculatus
MGP_SPRETEiJ_G0026727	-	99	68.581	ENSLAFG00000015386	TGS1	99	68.581	Loxodonta_africana
MGP_SPRETEiJ_G0026727	-	99	72.600	ENSMFAG00000029838	TGS1	99	72.834	Macaca_fascicularis
MGP_SPRETEiJ_G0026727	-	99	72.365	ENSMMUG00000005478	TGS1	99	72.365	Macaca_mulatta
MGP_SPRETEiJ_G0026727	-	99	72.834	ENSMNEG00000023719	TGS1	99	73.068	Macaca_nemestrina
MGP_SPRETEiJ_G0026727	-	99	73.068	ENSMLEG00000034807	TGS1	99	73.068	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0026727	-	98	37.810	ENSMAMG00000009542	TGS1	98	37.923	Mastacembelus_armatus
MGP_SPRETEiJ_G0026727	-	97	38.002	ENSMZEG00005015681	lyn	98	38.940	Maylandia_zebra
MGP_SPRETEiJ_G0026727	-	81	49.394	ENSMGAG00000010966	TGS1	99	47.215	Meleagris_gallopavo
MGP_SPRETEiJ_G0026727	-	100	81.787	ENSMAUG00000009875	Tgs1	100	81.702	Mesocricetus_auratus
MGP_SPRETEiJ_G0026727	-	99	73.801	ENSMICG00000011199	TGS1	99	73.684	Microcebus_murinus
MGP_SPRETEiJ_G0026727	-	99	78.286	ENSMOCG00000019560	Tgs1	100	78.169	Microtus_ochrogaster
MGP_SPRETEiJ_G0026727	-	86	61.373	ENSMODG00000009174	TGS1	98	61.777	Monodelphis_domestica
MGP_SPRETEiJ_G0026727	-	99	89.919	MGP_CAROLIEiJ_G0025780	-	99	89.919	Mus_caroli
MGP_SPRETEiJ_G0026727	-	100	97.653	MGP_CAROLIEiJ_G0025779	-	100	97.653	Mus_caroli
MGP_SPRETEiJ_G0026727	-	100	98.710	ENSMUSG00000028233	Tgs1	100	98.710	Mus_musculus
MGP_SPRETEiJ_G0026727	-	99	92.974	MGP_PahariEiJ_G0023901	-	99	92.389	Mus_pahari
MGP_SPRETEiJ_G0026727	-	99	85.450	MGP_PahariEiJ_G0023902	-	99	84.873	Mus_pahari
MGP_SPRETEiJ_G0026727	-	92	69.018	ENSMPUG00000010475	TGS1	99	69.560	Mustela_putorius_furo
MGP_SPRETEiJ_G0026727	-	99	69.123	ENSMLUG00000014857	TGS1	99	69.123	Myotis_lucifugus
MGP_SPRETEiJ_G0026727	-	100	75.494	ENSNGAG00000019532	Tgs1	100	75.958	Nannospalax_galili
MGP_SPRETEiJ_G0026727	-	99	73.068	ENSNLEG00000001101	TGS1	99	73.068	Nomascus_leucogenys
MGP_SPRETEiJ_G0026727	-	92	58.742	ENSMEUG00000001697	TGS1	99	59.245	Notamacropus_eugenii
MGP_SPRETEiJ_G0026727	-	90	63.990	ENSODEG00000002948	TGS1	100	63.990	Octodon_degus
MGP_SPRETEiJ_G0026727	-	50	49.655	ENSONIG00000006339	lyn	97	40.761	Oreochromis_niloticus
MGP_SPRETEiJ_G0026727	-	88	58.696	ENSOANG00000021853	TGS1	98	58.696	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0026727	-	99	71.864	ENSOCUG00000017522	TGS1	99	72.098	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0026727	-	65	73.953	ENSORLG00000004299	lyn	92	35.100	Oryzias_latipes
MGP_SPRETEiJ_G0026727	-	76	38.484	ENSOMEG00000020174	lyn	96	35.952	Oryzias_melastigma
MGP_SPRETEiJ_G0026727	-	99	71.329	ENSOGAG00000012572	TGS1	99	71.329	Otolemur_garnettii
MGP_SPRETEiJ_G0026727	-	99	66.082	ENSOARG00000014613	TGS1	99	66.355	Ovis_aries
MGP_SPRETEiJ_G0026727	-	99	73.536	ENSPPAG00000039058	TGS1	99	73.536	Pan_paniscus
MGP_SPRETEiJ_G0026727	-	99	70.270	ENSPPRG00000000677	TGS1	99	70.175	Panthera_pardus
MGP_SPRETEiJ_G0026727	-	99	70.505	ENSPTIG00000005122	TGS1	99	70.409	Panthera_tigris_altaica
MGP_SPRETEiJ_G0026727	-	99	73.419	ENSPTRG00000020262	TGS1	99	73.419	Pan_troglodytes
MGP_SPRETEiJ_G0026727	-	99	72.717	ENSPANG00000018910	TGS1	99	72.717	Papio_anubis
MGP_SPRETEiJ_G0026727	-	76	42.232	ENSPKIG00000005454	lyn	68	42.273	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0026727	-	99	51.444	ENSPSIG00000014983	TGS1	99	52.000	Pelodiscus_sinensis
MGP_SPRETEiJ_G0026727	-	100	81.680	ENSPEMG00000007957	Tgs1	100	81.744	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0026727	-	99	61.467	ENSPCIG00000016232	TGS1	98	61.932	Phascolarctos_cinereus
MGP_SPRETEiJ_G0026727	-	75	39.177	ENSPFOG00000001545	-	99	39.024	Poecilia_formosa
MGP_SPRETEiJ_G0026727	-	91	34.105	ENSPREG00000012261	-	99	33.780	Poecilia_reticulata
MGP_SPRETEiJ_G0026727	-	99	73.419	ENSPPYG00000018597	TGS1	99	73.302	Pongo_abelii
MGP_SPRETEiJ_G0026727	-	99	66.863	ENSPCAG00000000143	TGS1	99	66.745	Procavia_capensis
MGP_SPRETEiJ_G0026727	-	99	73.216	ENSPCOG00000013537	TGS1	99	73.099	Propithecus_coquereli
MGP_SPRETEiJ_G0026727	-	99	66.157	ENSPVAG00000016399	TGS1	99	66.157	Pteropus_vampyrus
MGP_SPRETEiJ_G0026727	-	76	42.814	ENSPNYG00000023004	lyn	87	39.822	Pundamilia_nyererei
MGP_SPRETEiJ_G0026727	-	96	38.941	ENSPNAG00000022249	lyn	97	40.094	Pygocentrus_nattereri
MGP_SPRETEiJ_G0026727	-	99	88.180	ENSRNOG00000008156	Tgs1	99	87.589	Rattus_norvegicus
MGP_SPRETEiJ_G0026727	-	99	70.726	ENSRBIG00000041893	TGS1	99	70.843	Rhinopithecus_bieti
MGP_SPRETEiJ_G0026727	-	99	72.717	ENSRROG00000035127	TGS1	99	72.717	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0026727	-	95	71.795	ENSSBOG00000024469	TGS1	99	71.673	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0026727	-	99	59.791	ENSSHAG00000012878	TGS1	98	60.487	Sarcophilus_harrisii
MGP_SPRETEiJ_G0026727	-	85	75.701	ENSSFOG00015001308	tgs1	97	38.568	Scleropages_formosus
MGP_SPRETEiJ_G0026727	-	76	39.653	ENSSMAG00000019469	lyn	96	37.745	Scophthalmus_maximus
MGP_SPRETEiJ_G0026727	-	89	63.389	ENSSSCG00000006251	TGS1	98	63.777	Sus_scrofa
MGP_SPRETEiJ_G0026727	-	96	50.845	ENSTGUG00000011050	TGS1	100	50.725	Taeniopygia_guttata
MGP_SPRETEiJ_G0026727	-	53	67.281	ENSTRUG00000009532	lyn	66	67.907	Takifugu_rubripes
MGP_SPRETEiJ_G0026727	-	88	37.821	ENSTNIG00000018133	lyn	99	38.706	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0026727	-	84	98.276	ENSTBEG00000010953	TGS1	85	98.276	Tupaia_belangeri
MGP_SPRETEiJ_G0026727	-	92	73.214	ENSTTRG00000017239	TGS1	99	62.368	Tursiops_truncatus
MGP_SPRETEiJ_G0026727	-	99	71.077	ENSUAMG00000027718	TGS1	99	70.843	Ursus_americanus
MGP_SPRETEiJ_G0026727	-	92	70.063	ENSUMAG00000009761	TGS1	99	69.811	Ursus_maritimus
MGP_SPRETEiJ_G0026727	-	83	62.865	ENSVPAG00000001166	TGS1	87	63.282	Vicugna_pacos
MGP_SPRETEiJ_G0026727	-	92	67.889	ENSVVUG00000017821	TGS1	99	68.050	Vulpes_vulpes
MGP_SPRETEiJ_G0026727	-	99	44.546	ENSXETG00000005648	tgs1	99	44.954	Xenopus_tropicalis