EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0026758 (Gene tree)
Gene ID: -
Gene Symbol: Rad54b
Alias: E130016E03Rik
Full Name: RAD54 homolog B (S. cerevisiae)
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 58928 bases
Position: chr4:8102582-8161509
Accession: 3605986
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0063884	ResIII	PF04851.15	6e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0063888	-	706	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0063887	-	801	-	MGP_SPRETEiJ_P0063887	155 (aa)	-	-
MGP_SPRETEiJ_T0063884	-	2870	-	MGP_SPRETEiJ_P0063884	886 (aa)	-	-
MGP_SPRETEiJ_T0063885	-	447	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0063882	-	2466	-	MGP_SPRETEiJ_P0063882	98 (aa)	-	UPI0000D63B8B
MGP_SPRETEiJ_T0063883	-	652	-	MGP_SPRETEiJ_P0063883	93 (aa)	-	UPI00001F1A38
MGP_SPRETEiJ_T0063881	-	434	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0026758's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0026758's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0026758	Rad54b	74	44.725	MGP_SPRETEiJ_G0027297	Rad54l	85	44.725
MGP_SPRETEiJ_G0026758	Rad54b	61	30.233	MGP_SPRETEiJ_G0019515	-	85	30.066
MGP_SPRETEiJ_G0026758	Rad54b	61	32.155	MGP_SPRETEiJ_G0034192	Smarca1	68	31.488
MGP_SPRETEiJ_G0026758	Rad54b	56	30.392	MGP_SPRETEiJ_G0026347	Chd1l	50	30.920

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0026758	Rad54b	81	83.978	ENSG00000265817	FSBP	99	83.978	Homo_sapiens
MGP_SPRETEiJ_G0026758	Rad54b	99	79.208	ENSG00000197275	RAD54B	99	79.208	Homo_sapiens
MGP_SPRETEiJ_G0026758	Rad54b	100	79.276	ENSAMEG00000005834	-	100	79.276	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0026758	Rad54b	99	55.295	ENSACIG00000013005	rad54b	99	55.295	Amphilophus_citrinellus
MGP_SPRETEiJ_G0026758	Rad54b	99	54.341	ENSAOCG00000008523	rad54b	99	54.341	Amphiprion_ocellaris
MGP_SPRETEiJ_G0026758	Rad54b	99	55.543	ENSAPEG00000001673	rad54b	99	55.543	Amphiprion_percula
MGP_SPRETEiJ_G0026758	Rad54b	99	55.518	ENSATEG00000001527	rad54b	99	55.518	Anabas_testudineus
MGP_SPRETEiJ_G0026758	Rad54b	99	66.996	ENSAPLG00000014366	-	99	66.996	Anas_platyrhynchos
MGP_SPRETEiJ_G0026758	Rad54b	90	69.489	ENSACAG00000003671	-	99	69.489	Anolis_carolinensis
MGP_SPRETEiJ_G0026758	Rad54b	73	83.025	ENSANAG00000019528	-	99	83.025	Aotus_nancymaae
MGP_SPRETEiJ_G0026758	Rad54b	99	55.592	ENSACLG00000007826	rad54b	99	55.592	Astatotilapia_calliptera
MGP_SPRETEiJ_G0026758	Rad54b	87	57.252	ENSAMXG00000039985	rad54b	94	56.999	Astyanax_mexicanus
MGP_SPRETEiJ_G0026758	Rad54b	100	76.509	ENSBTAG00000000632	RAD54B	100	76.509	Bos_taurus
MGP_SPRETEiJ_G0026758	Rad54b	81	35.067	WBGene00013792	Y116A8C.13	85	34.686	Caenorhabditis_elegans
MGP_SPRETEiJ_G0026758	Rad54b	99	77.998	ENSCJAG00000000080	-	99	82.320	Callithrix_jacchus
MGP_SPRETEiJ_G0026758	Rad54b	100	77.656	ENSCAFG00000009179	RAD54B	99	77.656	Canis_familiaris
MGP_SPRETEiJ_G0026758	Rad54b	100	77.437	ENSCAFG00020012084	-	99	77.437	Canis_lupus_dingo
MGP_SPRETEiJ_G0026758	Rad54b	100	76.729	ENSCHIG00000008230	-	100	76.729	Capra_hircus
MGP_SPRETEiJ_G0026758	Rad54b	100	79.363	ENSTSYG00000013234	-	100	79.363	Carlito_syrichta
MGP_SPRETEiJ_G0026758	Rad54b	99	78.372	ENSCPOG00000011643	-	99	78.372	Cavia_porcellus
MGP_SPRETEiJ_G0026758	Rad54b	100	78.242	ENSCCAG00000011754	-	99	82.207	Cebus_capucinus
MGP_SPRETEiJ_G0026758	Rad54b	99	78.878	ENSCATG00000030661	-	99	83.840	Cercocebus_atys
MGP_SPRETEiJ_G0026758	Rad54b	99	81.532	ENSCLAG00000010476	-	99	81.532	Chinchilla_lanigera
MGP_SPRETEiJ_G0026758	Rad54b	99	78.524	ENSCSAG00000012712	-	99	78.524	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0026758	Rad54b	99	66.450	ENSCPBG00000003204	-	99	66.980	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0026758	Rad54b	99	79.098	ENSCANG00000017939	-	99	83.978	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0026758	Rad54b	100	85.522	ENSCGRG00001020184	Rad54b	100	85.522	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0026758	Rad54b	100	84.081	ENSCGRG00000016752	Rad54b	100	84.081	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0026758	Rad54b	99	55.717	ENSCSEG00000001601	rad54b	99	55.717	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0026758	Rad54b	99	56.763	ENSCVAG00000009200	rad54b	99	56.763	Cyprinodon_variegatus
MGP_SPRETEiJ_G0026758	Rad54b	100	52.533	ENSDARG00000092134	rad54b	100	59.418	Danio_rerio
MGP_SPRETEiJ_G0026758	Rad54b	99	75.904	ENSDNOG00000015535	-	99	75.904	Dasypus_novemcinctus
MGP_SPRETEiJ_G0026758	Rad54b	100	79.775	ENSDORG00000002492	Rad54b	100	80.000	Dipodomys_ordii
MGP_SPRETEiJ_G0026758	Rad54b	86	76.373	ENSETEG00000010605	-	100	76.373	Echinops_telfairi
MGP_SPRETEiJ_G0026758	Rad54b	100	46.811	ENSEBUG00000009104	rad54b	99	46.674	Eptatretus_burgeri
MGP_SPRETEiJ_G0026758	Rad54b	97	77.866	ENSEASG00005004021	-	99	77.866	Equus_asinus_asinus
MGP_SPRETEiJ_G0026758	Rad54b	100	77.912	ENSECAG00000021949	-	99	77.912	Equus_caballus
MGP_SPRETEiJ_G0026758	Rad54b	81	80.745	ENSEEUG00000008056	-	80	80.745	Erinaceus_europaeus
MGP_SPRETEiJ_G0026758	Rad54b	99	52.229	ENSELUG00000009287	rad54b	99	52.442	Esox_lucius
MGP_SPRETEiJ_G0026758	Rad54b	100	79.057	ENSFCAG00000015513	-	100	83.884	Felis_catus
MGP_SPRETEiJ_G0026758	Rad54b	99	65.468	ENSFALG00000005467	-	99	65.468	Ficedula_albicollis
MGP_SPRETEiJ_G0026758	Rad54b	99	79.052	ENSFDAG00000020541	-	99	79.052	Fukomys_damarensis
MGP_SPRETEiJ_G0026758	Rad54b	88	58.281	ENSFHEG00000014382	rad54b	87	58.406	Fundulus_heteroclitus
MGP_SPRETEiJ_G0026758	Rad54b	88	56.679	ENSGMOG00000014774	rad54b	98	56.679	Gadus_morhua
MGP_SPRETEiJ_G0026758	Rad54b	99	66.338	ENSGALG00000043597	RAD54B	99	66.338	Gallus_gallus
MGP_SPRETEiJ_G0026758	Rad54b	99	54.535	ENSGAFG00000007901	rad54b	99	54.535	Gambusia_affinis
MGP_SPRETEiJ_G0026758	Rad54b	99	53.614	ENSGACG00000009128	rad54b	100	53.614	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0026758	Rad54b	99	66.594	ENSGAGG00000018747	-	99	66.594	Gopherus_agassizii
MGP_SPRETEiJ_G0026758	Rad54b	100	78.618	ENSGGOG00000023516	-	100	78.618	Gorilla_gorilla
MGP_SPRETEiJ_G0026758	Rad54b	99	53.228	ENSHBUG00000016017	rad54b	99	53.228	Haplochromis_burtoni
MGP_SPRETEiJ_G0026758	Rad54b	100	78.275	ENSHGLG00000008263	RAD54B	99	78.275	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0026758	Rad54b	100	77.440	ENSHGLG00100008108	-	99	77.440	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0026758	Rad54b	99	53.786	ENSHCOG00000004764	rad54b	98	55.762	Hippocampus_comes
MGP_SPRETEiJ_G0026758	Rad54b	99	51.371	ENSIPUG00000018531	rad54b	99	51.317	Ictalurus_punctatus
MGP_SPRETEiJ_G0026758	Rad54b	99	78.429	ENSSTOG00000010791	-	99	78.429	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0026758	Rad54b	100	80.241	ENSJJAG00000010314	Rad54b	100	80.241	Jaculus_jaculus
MGP_SPRETEiJ_G0026758	Rad54b	99	55.369	ENSKMAG00000004744	rad54b	99	55.369	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0026758	Rad54b	83	67.600	ENSLACG00000000859	-	100	67.600	Latimeria_chalumnae
MGP_SPRETEiJ_G0026758	Rad54b	99	57.282	ENSLOCG00000010100	rad54b	93	63.625	Lepisosteus_oculatus
MGP_SPRETEiJ_G0026758	Rad54b	91	81.064	ENSLAFG00000015315	-	100	81.064	Loxodonta_africana
MGP_SPRETEiJ_G0026758	Rad54b	99	78.768	ENSMFAG00000031629	-	99	83.702	Macaca_fascicularis
MGP_SPRETEiJ_G0026758	Rad54b	99	78.768	ENSMMUG00000005659	-	99	78.768	Macaca_mulatta
MGP_SPRETEiJ_G0026758	Rad54b	99	78.634	ENSMNEG00000016408	-	99	78.634	Macaca_nemestrina
MGP_SPRETEiJ_G0026758	Rad54b	99	78.768	ENSMLEG00000006946	-	99	78.768	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0026758	Rad54b	99	56.333	ENSMAMG00000012269	rad54b	99	56.333	Mastacembelus_armatus
MGP_SPRETEiJ_G0026758	Rad54b	99	53.439	ENSMZEG00005005281	rad54b	97	57.990	Maylandia_zebra
MGP_SPRETEiJ_G0026758	Rad54b	99	65.974	ENSMGAG00000012024	-	99	65.974	Meleagris_gallopavo
MGP_SPRETEiJ_G0026758	Rad54b	100	85.297	ENSMAUG00000013586	Rad54b	100	85.297	Mesocricetus_auratus
MGP_SPRETEiJ_G0026758	Rad54b	99	79.349	ENSMICG00000000754	-	99	79.461	Microcebus_murinus
MGP_SPRETEiJ_G0026758	Rad54b	100	85.522	ENSMOCG00000020035	Rad54b	99	85.522	Microtus_ochrogaster
MGP_SPRETEiJ_G0026758	Rad54b	99	53.603	ENSMMOG00000003394	rad54b	99	53.603	Mola_mola
MGP_SPRETEiJ_G0026758	Rad54b	90	75.498	ENSMODG00000007343	-	99	75.498	Monodelphis_domestica
MGP_SPRETEiJ_G0026758	Rad54b	72	60.465	ENSMALG00000001520	rad54b	99	60.465	Monopterus_albus
MGP_SPRETEiJ_G0026758	Rad54b	100	97.178	MGP_CAROLIEiJ_G0025810	Rad54b	100	97.178	Mus_caroli
MGP_SPRETEiJ_G0026758	Rad54b	100	98.646	ENSMUSG00000078773	Rad54b	100	98.646	Mus_musculus
MGP_SPRETEiJ_G0026758	Rad54b	100	96.163	MGP_PahariEiJ_G0023933	Rad54b	100	96.163	Mus_pahari
MGP_SPRETEiJ_G0026758	Rad54b	91	82.324	ENSMPUG00000008878	-	100	82.324	Mustela_putorius_furo
MGP_SPRETEiJ_G0026758	Rad54b	100	77.193	ENSMLUG00000008953	-	100	77.193	Myotis_lucifugus
MGP_SPRETEiJ_G0026758	Rad54b	100	84.351	ENSNGAG00000017537	Rad54b	100	84.351	Nannospalax_galili
MGP_SPRETEiJ_G0026758	Rad54b	99	55.592	ENSNBRG00000013394	rad54b	99	55.592	Neolamprologus_brichardi
MGP_SPRETEiJ_G0026758	Rad54b	99	79.318	ENSNLEG00000003062	-	99	83.702	Nomascus_leucogenys
MGP_SPRETEiJ_G0026758	Rad54b	73	71.138	ENSMEUG00000012426	-	71	71.138	Notamacropus_eugenii
MGP_SPRETEiJ_G0026758	Rad54b	100	76.932	ENSODEG00000019564	-	100	76.932	Octodon_degus
MGP_SPRETEiJ_G0026758	Rad54b	91	75.217	ENSODEG00000002650	-	96	82.308	Octodon_degus
MGP_SPRETEiJ_G0026758	Rad54b	99	54.095	ENSONIG00000006067	rad54b	99	54.095	Oreochromis_niloticus
MGP_SPRETEiJ_G0026758	Rad54b	84	73.210	ENSOANG00000011348	-	100	73.210	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0026758	Rad54b	100	77.717	ENSOCUG00000016478	-	99	77.717	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0026758	Rad54b	99	53.838	ENSORLG00000008918	rad54b	99	62.461	Oryzias_latipes
MGP_SPRETEiJ_G0026758	Rad54b	72	62.461	ENSORLG00020012171	rad54b	99	62.461	Oryzias_latipes_hni
MGP_SPRETEiJ_G0026758	Rad54b	99	53.674	ENSORLG00015018536	rad54b	99	53.674	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0026758	Rad54b	85	59.792	ENSOMEG00000004345	rad54b	99	59.792	Oryzias_melastigma
MGP_SPRETEiJ_G0026758	Rad54b	99	78.485	ENSOGAG00000007854	-	99	78.485	Otolemur_garnettii
MGP_SPRETEiJ_G0026758	Rad54b	91	81.281	ENSOARG00000007691	-	100	81.281	Ovis_aries
MGP_SPRETEiJ_G0026758	Rad54b	99	77.668	ENSPPAG00000029572	-	99	77.668	Pan_paniscus
MGP_SPRETEiJ_G0026758	Rad54b	100	79.276	ENSPPRG00000007571	-	100	83.884	Panthera_pardus
MGP_SPRETEiJ_G0026758	Rad54b	81	83.884	ENSPTIG00000012670	-	100	83.884	Panthera_tigris_altaica
MGP_SPRETEiJ_G0026758	Rad54b	99	79.098	ENSPTRG00000020427	-	99	83.978	Pan_troglodytes
MGP_SPRETEiJ_G0026758	Rad54b	99	78.878	ENSPANG00000019566	-	99	78.878	Papio_anubis
MGP_SPRETEiJ_G0026758	Rad54b	99	57.236	ENSPKIG00000014974	rad54b	99	57.236	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0026758	Rad54b	99	64.924	ENSPSIG00000002383	-	98	69.701	Pelodiscus_sinensis
MGP_SPRETEiJ_G0026758	Rad54b	100	85.971	ENSPEMG00000012133	Rad54b	100	85.971	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0026758	Rad54b	88	57.431	ENSPMAG00000002916	rad54b	98	57.809	Petromyzon_marinus
MGP_SPRETEiJ_G0026758	Rad54b	90	76.559	ENSPCIG00000020151	-	94	76.280	Phascolarctos_cinereus
MGP_SPRETEiJ_G0026758	Rad54b	99	53.466	ENSPFOG00000023411	rad54b	99	53.466	Poecilia_formosa
MGP_SPRETEiJ_G0026758	Rad54b	99	53.676	ENSPLAG00000010430	rad54b	99	53.676	Poecilia_latipinna
MGP_SPRETEiJ_G0026758	Rad54b	99	55.022	ENSPMEG00000016873	rad54b	99	55.022	Poecilia_mexicana
MGP_SPRETEiJ_G0026758	Rad54b	99	55.752	ENSPREG00000018443	rad54b	99	55.752	Poecilia_reticulata
MGP_SPRETEiJ_G0026758	Rad54b	99	78.768	ENSPPYG00000018750	-	99	78.768	Pongo_abelii
MGP_SPRETEiJ_G0026758	Rad54b	99	80.110	ENSPCOG00000026845	-	99	84.690	Propithecus_coquereli
MGP_SPRETEiJ_G0026758	Rad54b	83	82.726	ENSPVAG00000000261	-	86	82.726	Pteropus_vampyrus
MGP_SPRETEiJ_G0026758	Rad54b	87	58.981	ENSPNYG00000018303	rad54b	95	58.981	Pundamilia_nyererei
MGP_SPRETEiJ_G0026758	Rad54b	99	53.754	ENSPNAG00000000295	rad54b	99	53.712	Pygocentrus_nattereri
MGP_SPRETEiJ_G0026758	Rad54b	100	88.639	ENSRNOG00000039949	Rad54b	100	88.639	Rattus_norvegicus
MGP_SPRETEiJ_G0026758	Rad54b	99	78.438	ENSRBIG00000020419	-	99	78.438	Rhinopithecus_bieti
MGP_SPRETEiJ_G0026758	Rad54b	99	78.438	ENSRROG00000039897	-	99	78.438	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0026758	Rad54b	92	34.043	YBR073W	RDH54	68	38.913	Saccharomyces_cerevisiae
MGP_SPRETEiJ_G0026758	Rad54b	100	77.632	ENSSBOG00000028501	-	100	77.632	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0026758	Rad54b	99	70.801	ENSSHAG00000017038	-	99	70.801	Sarcophilus_harrisii
MGP_SPRETEiJ_G0026758	Rad54b	64	65.088	ENSSFOG00015008483	rad54b	88	65.088	Scleropages_formosus
MGP_SPRETEiJ_G0026758	Rad54b	99	55.556	ENSSMAG00000018659	rad54b	99	55.668	Scophthalmus_maximus
MGP_SPRETEiJ_G0026758	Rad54b	97	54.109	ENSSDUG00000001122	rad54b	97	54.322	Seriola_dumerili
MGP_SPRETEiJ_G0026758	Rad54b	99	54.105	ENSSLDG00000013787	rad54b	99	54.316	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0026758	Rad54b	99	66.741	ENSSPUG00000016497	-	99	66.741	Sphenodon_punctatus
MGP_SPRETEiJ_G0026758	Rad54b	99	55.088	ENSSPAG00000012800	rad54b	99	55.088	Stegastes_partitus
MGP_SPRETEiJ_G0026758	Rad54b	100	77.852	ENSSSCG00000006101	-	99	82.581	Sus_scrofa
MGP_SPRETEiJ_G0026758	Rad54b	99	65.498	ENSTGUG00000011880	-	99	65.498	Taeniopygia_guttata
MGP_SPRETEiJ_G0026758	Rad54b	99	53.602	ENSTRUG00000010015	rad54b	99	53.602	Takifugu_rubripes
MGP_SPRETEiJ_G0026758	Rad54b	100	74.863	ENSTTRG00000006312	-	100	74.863	Tursiops_truncatus
MGP_SPRETEiJ_G0026758	Rad54b	100	78.728	ENSUMAG00000016401	-	100	78.728	Ursus_maritimus
MGP_SPRETEiJ_G0026758	Rad54b	100	77.118	ENSVPAG00000003157	-	100	77.118	Vicugna_pacos
MGP_SPRETEiJ_G0026758	Rad54b	99	53.803	ENSXETG00000025924	rad54b	99	57.431	Xenopus_tropicalis
MGP_SPRETEiJ_G0026758	Rad54b	99	54.807	ENSXMAG00000013141	rad54b	99	54.807	Xiphophorus_maculatus