EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0026930 (Gene tree)
Gene ID: -
Gene Symbol: Polr1e
Alias: 53kDa|D030019D19Rik|Paf53|Praf1
Full Name: polymerase (RNA) I polypeptide E
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 17773 bases
Position: chr4:42399343-42417115
Accession: 1929022
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0064652	RNA_pol_I_A49	PF06870.12	3.8e-100	1	1
MGP_SPRETEiJ_P0064648	RNA_pol_I_A49	PF06870.12	4.7e-100	1	1
MGP_SPRETEiJ_P0064649	RNA_pol_I_A49	PF06870.12	4.1e-95	1	1
MGP_SPRETEiJ_P0064650	RNA_pol_I_A49	PF06870.12	4e-90	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0064649	-	1723	-	MGP_SPRETEiJ_P0064649	482 (aa)	-	-
MGP_SPRETEiJ_T0064648	-	2988	-	MGP_SPRETEiJ_P0064648	434 (aa)	-	-
MGP_SPRETEiJ_T0064654	-	642	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0064652	-	1235	-	MGP_SPRETEiJ_P0064652	406 (aa)	-	-
MGP_SPRETEiJ_T0064653	-	429	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0064650	-	1467	-	MGP_SPRETEiJ_P0064650	393 (aa)	-	-
MGP_SPRETEiJ_T0064651	-	642	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0026930's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0026930's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0026930	Polr1e	99	76.923	ENSG00000137054	POLR1E	99	76.867	Homo_sapiens
MGP_SPRETEiJ_G0026930	Polr1e	98	41.542	ENSAPOG00000012452	polr1e	94	58.824	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0026930	Polr1e	100	70.954	ENSAMEG00000010193	POLR1E	100	70.954	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0026930	Polr1e	97	43.467	ENSACIG00000009884	polr1e	99	55.814	Amphilophus_citrinellus
MGP_SPRETEiJ_G0026930	Polr1e	98	44.361	ENSAOCG00000005665	polr1e	99	44.578	Amphiprion_ocellaris
MGP_SPRETEiJ_G0026930	Polr1e	98	45.025	ENSAPEG00000020581	polr1e	99	45.215	Amphiprion_percula
MGP_SPRETEiJ_G0026930	Polr1e	97	45.844	ENSATEG00000020609	polr1e	99	45.542	Anabas_testudineus
MGP_SPRETEiJ_G0026930	Polr1e	83	52.756	ENSAPLG00000010340	POLR1E	100	55.729	Anas_platyrhynchos
MGP_SPRETEiJ_G0026930	Polr1e	99	77.363	ENSANAG00000038046	POLR1E	99	76.627	Aotus_nancymaae
MGP_SPRETEiJ_G0026930	Polr1e	98	43.781	ENSACLG00000013685	polr1e	98	43.780	Astatotilapia_calliptera
MGP_SPRETEiJ_G0026930	Polr1e	97	42.607	ENSAMXG00000018181	polr1e	98	42.233	Astyanax_mexicanus
MGP_SPRETEiJ_G0026930	Polr1e	97	80.000	ENSBTAG00000012243	POLR1E	99	79.327	Bos_taurus
MGP_SPRETEiJ_G0026930	Polr1e	99	70.823	ENSCJAG00000010512	POLR1E	93	76.011	Callithrix_jacchus
MGP_SPRETEiJ_G0026930	Polr1e	99	78.164	ENSCAFG00000002377	POLR1E	99	78.554	Canis_familiaris
MGP_SPRETEiJ_G0026930	Polr1e	97	79.135	ENSCAFG00020017851	POLR1E	99	78.795	Canis_lupus_dingo
MGP_SPRETEiJ_G0026930	Polr1e	97	78.734	ENSCHIG00000019479	POLR1E	99	78.072	Capra_hircus
MGP_SPRETEiJ_G0026930	Polr1e	97	78.372	ENSTSYG00000002075	POLR1E	99	78.177	Carlito_syrichta
MGP_SPRETEiJ_G0026930	Polr1e	71	80.903	ENSCAPG00000015653	POLR1E	99	80.903	Cavia_aperea
MGP_SPRETEiJ_G0026930	Polr1e	97	82.697	ENSCPOG00000009965	POLR1E	99	81.928	Cavia_porcellus
MGP_SPRETEiJ_G0026930	Polr1e	97	69.466	ENSCCAG00000029460	POLR1E	99	74.587	Cebus_capucinus
MGP_SPRETEiJ_G0026930	Polr1e	97	77.099	ENSCATG00000031732	POLR1E	99	81.081	Cercocebus_atys
MGP_SPRETEiJ_G0026930	Polr1e	94	82.114	ENSCLAG00000012701	POLR1E	97	82.114	Chinchilla_lanigera
MGP_SPRETEiJ_G0026930	Polr1e	97	76.845	ENSCSAG00000010782	POLR1E	99	76.386	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0026930	Polr1e	100	67.402	ENSCHOG00000013024	POLR1E	78	77.193	Choloepus_hoffmanni
MGP_SPRETEiJ_G0026930	Polr1e	97	64.377	ENSCPBG00000006923	POLR1E	99	63.747	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0026930	Polr1e	99	75.871	ENSCANG00000036112	POLR1E	99	80.357	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0026930	Polr1e	100	87.558	ENSCGRG00001006197	Polr1e	100	87.558	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0026930	Polr1e	100	87.097	ENSCGRG00000006430	Polr1e	100	87.097	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0026930	Polr1e	97	42.211	ENSCSEG00000005121	polr1e	99	41.262	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0026930	Polr1e	97	41.562	ENSCVAG00000019759	polr1e	99	41.205	Cyprinodon_variegatus
MGP_SPRETEiJ_G0026930	Polr1e	94	44.935	ENSDARG00000006434	polr1e	99	43.826	Danio_rerio
MGP_SPRETEiJ_G0026930	Polr1e	97	68.552	ENSDNOG00000010257	POLR1E	99	70.194	Dasypus_novemcinctus
MGP_SPRETEiJ_G0026930	Polr1e	87	74.366	ENSETEG00000018204	POLR1E	99	74.366	Echinops_telfairi
MGP_SPRETEiJ_G0026930	Polr1e	62	36.567	ENSEBUG00000010635	-	89	36.567	Eptatretus_burgeri
MGP_SPRETEiJ_G0026930	Polr1e	97	78.626	ENSEASG00005000675	POLR1E	99	78.554	Equus_asinus_asinus
MGP_SPRETEiJ_G0026930	Polr1e	97	78.372	ENSECAG00000014669	POLR1E	99	78.313	Equus_caballus
MGP_SPRETEiJ_G0026930	Polr1e	99	67.079	ENSEEUG00000011928	POLR1E	79	82.022	Erinaceus_europaeus
MGP_SPRETEiJ_G0026930	Polr1e	97	45.226	ENSELUG00000008150	polr1e	97	44.853	Esox_lucius
MGP_SPRETEiJ_G0026930	Polr1e	99	75.676	ENSFCAG00000013081	POLR1E	99	76.867	Felis_catus
MGP_SPRETEiJ_G0026930	Polr1e	97	56.456	ENSFALG00000012950	POLR1E	99	56.456	Ficedula_albicollis
MGP_SPRETEiJ_G0026930	Polr1e	97	83.206	ENSFDAG00000016917	POLR1E	99	82.651	Fukomys_damarensis
MGP_SPRETEiJ_G0026930	Polr1e	97	42.607	ENSFHEG00000009801	polr1e	99	42.206	Fundulus_heteroclitus
MGP_SPRETEiJ_G0026930	Polr1e	93	39.119	ENSGMOG00000003336	POLR1E	93	51.429	Gadus_morhua
MGP_SPRETEiJ_G0026930	Polr1e	98	58.838	ENSGALG00000005395	POLR1E	100	57.971	Gallus_gallus
MGP_SPRETEiJ_G0026930	Polr1e	97	42.317	ENSGAFG00000004850	polr1e	99	41.928	Gambusia_affinis
MGP_SPRETEiJ_G0026930	Polr1e	98	41.481	ENSGACG00000016087	polr1e	99	41.568	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0026930	Polr1e	97	56.997	ENSGAGG00000001659	POLR1E	98	65.979	Gopherus_agassizii
MGP_SPRETEiJ_G0026930	Polr1e	99	76.923	ENSGGOG00000001882	POLR1E	99	81.081	Gorilla_gorilla
MGP_SPRETEiJ_G0026930	Polr1e	98	43.781	ENSHBUG00000002559	polr1e	98	43.780	Haplochromis_burtoni
MGP_SPRETEiJ_G0026930	Polr1e	97	82.188	ENSHGLG00000002036	POLR1E	99	81.446	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0026930	Polr1e	97	82.443	ENSHGLG00100012784	POLR1E	99	81.687	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0026930	Polr1e	97	41.162	ENSHCOG00000002774	polr1e	99	41.687	Hippocampus_comes
MGP_SPRETEiJ_G0026930	Polr1e	97	43.108	ENSIPUG00000003019	polr1e	99	42.651	Ictalurus_punctatus
MGP_SPRETEiJ_G0026930	Polr1e	97	79.135	ENSSTOG00000009810	POLR1E	99	79.036	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0026930	Polr1e	97	81.934	ENSJJAG00000020731	Polr1e	99	79.446	Jaculus_jaculus
MGP_SPRETEiJ_G0026930	Polr1e	97	41.709	ENSKMAG00000000046	polr1e	99	41.827	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0026930	Polr1e	97	45.063	ENSLBEG00000003104	polr1e	99	45.192	Labrus_bergylta
MGP_SPRETEiJ_G0026930	Polr1e	88	62.327	ENSLACG00000003416	POLR1E	99	62.327	Latimeria_chalumnae
MGP_SPRETEiJ_G0026930	Polr1e	97	49.364	ENSLOCG00000012859	polr1e	99	48.441	Lepisosteus_oculatus
MGP_SPRETEiJ_G0026930	Polr1e	97	78.372	ENSLAFG00000012831	POLR1E	99	77.619	Loxodonta_africana
MGP_SPRETEiJ_G0026930	Polr1e	97	76.904	ENSMFAG00000045465	POLR1E	99	81.081	Macaca_fascicularis
MGP_SPRETEiJ_G0026930	Polr1e	97	77.099	ENSMMUG00000017892	POLR1E	99	81.081	Macaca_mulatta
MGP_SPRETEiJ_G0026930	Polr1e	97	70.297	ENSMNEG00000040283	POLR1E	99	76.889	Macaca_nemestrina
MGP_SPRETEiJ_G0026930	Polr1e	97	77.099	ENSMLEG00000031135	POLR1E	99	81.081	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0026930	Polr1e	97	44.250	ENSMAMG00000001260	polr1e	98	43.750	Mastacembelus_armatus
MGP_SPRETEiJ_G0026930	Polr1e	98	44.030	ENSMZEG00005021536	polr1e	98	44.019	Maylandia_zebra
MGP_SPRETEiJ_G0026930	Polr1e	99	87.067	ENSMAUG00000021044	Polr1e	99	87.067	Mesocricetus_auratus
MGP_SPRETEiJ_G0026930	Polr1e	99	77.114	ENSMICG00000003673	POLR1E	99	77.349	Microcebus_murinus
MGP_SPRETEiJ_G0026930	Polr1e	100	85.945	ENSMOCG00000012920	Polr1e	100	85.945	Microtus_ochrogaster
MGP_SPRETEiJ_G0026930	Polr1e	97	45.226	ENSMMOG00000007391	polr1e	99	44.125	Mola_mola
MGP_SPRETEiJ_G0026930	Polr1e	93	68.602	ENSMODG00000002884	POLR1E	97	68.182	Monodelphis_domestica
MGP_SPRETEiJ_G0026930	Polr1e	97	43.577	ENSMALG00000002665	polr1e	98	43.373	Monopterus_albus
MGP_SPRETEiJ_G0026930	Polr1e	100	95.853	MGP_CAROLIEiJ_G0025967	Polr1e	100	95.853	Mus_caroli
MGP_SPRETEiJ_G0026930	Polr1e	100	98.982	ENSMUSG00000028318	Polr1e	100	98.982	Mus_musculus
MGP_SPRETEiJ_G0026930	Polr1e	100	92.875	MGP_PahariEiJ_G0024114	Polr1e	100	92.875	Mus_pahari
MGP_SPRETEiJ_G0026930	Polr1e	97	72.399	ENSMPUG00000006040	POLR1E	100	72.399	Mustela_putorius_furo
MGP_SPRETEiJ_G0026930	Polr1e	97	77.354	ENSMLUG00000012688	POLR1E	98	75.878	Myotis_lucifugus
MGP_SPRETEiJ_G0026930	Polr1e	99	83.603	ENSNGAG00000002520	Polr1e	99	83.603	Nannospalax_galili
MGP_SPRETEiJ_G0026930	Polr1e	98	44.030	ENSNBRG00000016822	polr1e	98	44.019	Neolamprologus_brichardi
MGP_SPRETEiJ_G0026930	Polr1e	99	77.114	ENSNLEG00000003616	POLR1E	99	80.180	Nomascus_leucogenys
MGP_SPRETEiJ_G0026930	Polr1e	75	72.500	ENSMEUG00000015372	-	80	72.500	Notamacropus_eugenii
MGP_SPRETEiJ_G0026930	Polr1e	68	88.000	ENSOPRG00000014206	POLR1E	92	88.000	Ochotona_princeps
MGP_SPRETEiJ_G0026930	Polr1e	97	83.461	ENSODEG00000014565	POLR1E	100	80.465	Octodon_degus
MGP_SPRETEiJ_G0026930	Polr1e	100	42.601	ENSONIG00000008921	polr1e	100	42.601	Oreochromis_niloticus
MGP_SPRETEiJ_G0026930	Polr1e	97	78.880	ENSOCUG00000024773	POLR1E	99	78.554	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0026930	Polr1e	98	42.356	ENSORLG00000005143	polr1e	99	42.169	Oryzias_latipes
MGP_SPRETEiJ_G0026930	Polr1e	95	41.902	ENSORLG00020007271	polr1e	99	50.575	Oryzias_latipes_hni
MGP_SPRETEiJ_G0026930	Polr1e	98	42.105	ENSORLG00015000137	polr1e	99	41.928	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0026930	Polr1e	98	41.103	ENSOMEG00000013264	polr1e	99	40.758	Oryzias_melastigma
MGP_SPRETEiJ_G0026930	Polr1e	97	78.626	ENSOGAG00000012981	POLR1E	98	77.251	Otolemur_garnettii
MGP_SPRETEiJ_G0026930	Polr1e	97	78.987	ENSOARG00000011465	POLR1E	99	75.926	Ovis_aries
MGP_SPRETEiJ_G0026930	Polr1e	99	76.923	ENSPPAG00000034566	POLR1E	99	81.081	Pan_paniscus
MGP_SPRETEiJ_G0026930	Polr1e	97	76.590	ENSPPRG00000005649	POLR1E	99	76.627	Panthera_pardus
MGP_SPRETEiJ_G0026930	Polr1e	97	76.590	ENSPTIG00000009774	POLR1E	99	76.627	Panthera_tigris_altaica
MGP_SPRETEiJ_G0026930	Polr1e	99	76.923	ENSPTRG00000020944	POLR1E	99	81.081	Pan_troglodytes
MGP_SPRETEiJ_G0026930	Polr1e	97	77.099	ENSPANG00000025563	POLR1E	99	81.081	Papio_anubis
MGP_SPRETEiJ_G0026930	Polr1e	97	45.980	ENSPKIG00000003562	polr1e	99	45.084	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0026930	Polr1e	99	59.352	ENSPSIG00000003274	POLR1E	93	59.352	Pelodiscus_sinensis
MGP_SPRETEiJ_G0026930	Polr1e	98	42.611	ENSPMGG00000024169	polr1e	97	42.611	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0026930	Polr1e	100	86.406	ENSPEMG00000019151	-	100	86.406	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0026930	Polr1e	100	71.264	ENSPEMG00000022300	-	99	79.845	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0026930	Polr1e	93	69.129	ENSPCIG00000014798	POLR1E	97	68.939	Phascolarctos_cinereus
MGP_SPRETEiJ_G0026930	Polr1e	97	42.043	ENSPFOG00000019627	polr1e	100	41.704	Poecilia_formosa
MGP_SPRETEiJ_G0026930	Polr1e	97	43.577	ENSPLAG00000022679	polr1e	99	43.133	Poecilia_latipinna
MGP_SPRETEiJ_G0026930	Polr1e	94	41.710	ENSPMEG00000022123	polr1e	96	41.710	Poecilia_mexicana
MGP_SPRETEiJ_G0026930	Polr1e	97	42.714	ENSPREG00000009470	polr1e	99	42.410	Poecilia_reticulata
MGP_SPRETEiJ_G0026930	Polr1e	97	76.336	ENSPPYG00000019061	POLR1E	99	75.904	Pongo_abelii
MGP_SPRETEiJ_G0026930	Polr1e	58	75.847	ENSPCAG00000004891	POLR1E	77	75.847	Procavia_capensis
MGP_SPRETEiJ_G0026930	Polr1e	99	75.990	ENSPCOG00000027448	POLR1E	99	77.349	Propithecus_coquereli
MGP_SPRETEiJ_G0026930	Polr1e	99	79.353	ENSPVAG00000007940	POLR1E	85	79.353	Pteropus_vampyrus
MGP_SPRETEiJ_G0026930	Polr1e	98	43.781	ENSPNYG00000001032	polr1e	98	43.780	Pundamilia_nyererei
MGP_SPRETEiJ_G0026930	Polr1e	97	42.424	ENSPNAG00000006987	polr1e	95	42.821	Pygocentrus_nattereri
MGP_SPRETEiJ_G0026930	Polr1e	100	89.401	ENSRNOG00000012664	Polr1e	100	89.401	Rattus_norvegicus
MGP_SPRETEiJ_G0026930	Polr1e	99	76.559	ENSRBIG00000034214	POLR1E	99	76.316	Rhinopithecus_bieti
MGP_SPRETEiJ_G0026930	Polr1e	97	76.590	ENSRROG00000031986	POLR1E	99	81.081	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0026930	Polr1e	97	77.099	ENSSBOG00000021415	POLR1E	99	75.904	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0026930	Polr1e	88	67.778	ENSSHAG00000016084	POLR1E	100	67.778	Sarcophilus_harrisii
MGP_SPRETEiJ_G0026930	Polr1e	97	46.599	ENSSFOG00015002293	polr1e	98	45.854	Scleropages_formosus
MGP_SPRETEiJ_G0026930	Polr1e	97	45.960	ENSSMAG00000011672	polr1e	91	46.324	Scophthalmus_maximus
MGP_SPRETEiJ_G0026930	Polr1e	98	43.860	ENSSDUG00000022279	polr1e	97	44.499	Seriola_dumerili
MGP_SPRETEiJ_G0026930	Polr1e	98	43.609	ENSSLDG00000024918	polr1e	97	44.254	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0026930	Polr1e	59	64.655	ENSSARG00000009810	-	58	64.655	Sorex_araneus
MGP_SPRETEiJ_G0026930	Polr1e	97	64.467	ENSSPUG00000009499	POLR1E	99	62.954	Sphenodon_punctatus
MGP_SPRETEiJ_G0026930	Polr1e	98	44.612	ENSSPAG00000021240	polr1e	98	55.556	Stegastes_partitus
MGP_SPRETEiJ_G0026930	Polr1e	98	79.798	ENSSSCG00000005347	POLR1E	99	79.087	Sus_scrofa
MGP_SPRETEiJ_G0026930	Polr1e	97	46.953	ENSTGUG00000007169	POLR1E	100	51.007	Taeniopygia_guttata
MGP_SPRETEiJ_G0026930	Polr1e	97	42.537	ENSTRUG00000020779	polr1e	99	42.037	Takifugu_rubripes
MGP_SPRETEiJ_G0026930	Polr1e	97	43.073	ENSTNIG00000017812	polr1e	99	42.651	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0026930	Polr1e	99	79.115	ENSTBEG00000013786	POLR1E	87	79.115	Tupaia_belangeri
MGP_SPRETEiJ_G0026930	Polr1e	99	79.064	ENSTTRG00000008294	POLR1E	86	79.064	Tursiops_truncatus
MGP_SPRETEiJ_G0026930	Polr1e	97	78.626	ENSUAMG00000012474	POLR1E	99	79.396	Ursus_americanus
MGP_SPRETEiJ_G0026930	Polr1e	97	78.626	ENSUMAG00000011496	POLR1E	99	78.554	Ursus_maritimus
MGP_SPRETEiJ_G0026930	Polr1e	87	73.314	ENSVPAG00000009048	POLR1E	84	72.113	Vicugna_pacos
MGP_SPRETEiJ_G0026930	Polr1e	97	79.135	ENSVVUG00000019954	POLR1E	99	78.554	Vulpes_vulpes
MGP_SPRETEiJ_G0026930	Polr1e	97	48.744	ENSXETG00000006533	polr1e	99	48.184	Xenopus_tropicalis
MGP_SPRETEiJ_G0026930	Polr1e	97	42.569	ENSXCOG00000013706	polr1e	99	52.830	Xiphophorus_couchianus
MGP_SPRETEiJ_G0026930	Polr1e	97	44.081	ENSXMAG00000012484	polr1e	99	43.614	Xiphophorus_maculatus