EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0027297 (Gene tree)
Gene ID: -
Gene Symbol: Rad54l
Alias: RAD54
Full Name: RAD54 like (S. cerevisiae)
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 28346 bases
Position: chr4:112313652-112341997
Accession: 894697
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0066239	ResIII	PF04851.15	2.3e-09	1	1
MGP_SPRETEiJ_P0066240	ResIII	PF04851.15	2.3e-09	1	1
MGP_SPRETEiJ_P0066239	DEAD	PF00270.29	9.1e-07	1	1
MGP_SPRETEiJ_P0066240	DEAD	PF00270.29	9.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0066243	-	1302	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0066242	-	214	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0066241	-	654	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0066240	-	3024	-	MGP_SPRETEiJ_P0066240	747 (aa)	-	-
MGP_SPRETEiJ_T0066238	-	4489	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0066239	-	2778	-	MGP_SPRETEiJ_P0066239	747 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0027297's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0027297's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0027297	Rad54l	66	30.785	MGP_SPRETEiJ_G0026347	Chd1l	50	30.584
MGP_SPRETEiJ_G0027297	Rad54l	66	33.267	MGP_SPRETEiJ_G0034192	Smarca1	61	32.031
MGP_SPRETEiJ_G0027297	Rad54l	85	44.725	MGP_SPRETEiJ_G0026758	Rad54b	74	44.725

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0027297	Rad54l	99	94.638	ENSG00000085999	RAD54L	100	96.000	Homo_sapiens
MGP_SPRETEiJ_G0027297	Rad54l	99	76.716	ENSAPOG00000011643	rad54l	99	76.716	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0027297	Rad54l	99	94.497	ENSAMEG00000013902	RAD54L	99	94.497	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0027297	Rad54l	99	77.450	ENSACIG00000001939	rad54l	99	77.450	Amphilophus_citrinellus
MGP_SPRETEiJ_G0027297	Rad54l	99	79.677	ENSAOCG00000017576	rad54l	99	79.677	Amphiprion_ocellaris
MGP_SPRETEiJ_G0027297	Rad54l	95	81.013	ENSAPEG00000020658	rad54l	98	81.013	Amphiprion_percula
MGP_SPRETEiJ_G0027297	Rad54l	94	81.392	ENSATEG00000006767	rad54l	99	81.392	Anabas_testudineus
MGP_SPRETEiJ_G0027297	Rad54l	94	86.325	ENSAPLG00000006389	RAD54L	99	86.325	Anas_platyrhynchos
MGP_SPRETEiJ_G0027297	Rad54l	99	83.802	ENSACAG00000002312	RAD54L	99	83.802	Anolis_carolinensis
MGP_SPRETEiJ_G0027297	Rad54l	99	94.102	ENSANAG00000035439	RAD54L	99	94.102	Aotus_nancymaae
MGP_SPRETEiJ_G0027297	Rad54l	99	76.676	ENSACLG00000018711	rad54l	99	76.676	Astatotilapia_calliptera
MGP_SPRETEiJ_G0027297	Rad54l	99	80.161	ENSAMXG00000012777	rad54l	99	80.161	Astyanax_mexicanus
MGP_SPRETEiJ_G0027297	Rad54l	100	94.652	ENSBTAG00000019901	RAD54L	99	94.652	Bos_taurus
MGP_SPRETEiJ_G0027297	Rad54l	93	58.106	WBGene00004298	rad-54	84	58.106	Caenorhabditis_elegans
MGP_SPRETEiJ_G0027297	Rad54l	99	91.444	ENSCJAG00000021080	RAD54L	94	93.617	Callithrix_jacchus
MGP_SPRETEiJ_G0027297	Rad54l	99	94.370	ENSCAFG00000004272	RAD54L	99	94.370	Canis_familiaris
MGP_SPRETEiJ_G0027297	Rad54l	99	94.362	ENSCAFG00020015066	RAD54L	99	94.362	Canis_lupus_dingo
MGP_SPRETEiJ_G0027297	Rad54l	99	94.378	ENSCHIG00000020118	RAD54L	99	94.378	Capra_hircus
MGP_SPRETEiJ_G0027297	Rad54l	99	93.574	ENSTSYG00000002032	RAD54L	99	93.574	Carlito_syrichta
MGP_SPRETEiJ_G0027297	Rad54l	100	94.779	ENSCPOG00000006768	RAD54L	99	94.779	Cavia_porcellus
MGP_SPRETEiJ_G0027297	Rad54l	99	94.772	ENSCCAG00000025783	RAD54L	99	94.772	Cebus_capucinus
MGP_SPRETEiJ_G0027297	Rad54l	99	94.504	ENSCATG00000030589	RAD54L	99	94.504	Cercocebus_atys
MGP_SPRETEiJ_G0027297	Rad54l	100	95.448	ENSCLAG00000004645	RAD54L	99	95.448	Chinchilla_lanigera
MGP_SPRETEiJ_G0027297	Rad54l	99	94.638	ENSCSAG00000001229	RAD54L	99	94.638	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0027297	Rad54l	99	85.810	ENSCPBG00000005675	RAD54L	99	85.810	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0027297	Rad54l	99	63.111	ENSCING00000024456	-	99	63.030	Ciona_intestinalis
MGP_SPRETEiJ_G0027297	Rad54l	99	62.939	ENSCSAVG00000010859	-	99	62.939	Ciona_savignyi
MGP_SPRETEiJ_G0027297	Rad54l	99	94.370	ENSCANG00000034891	RAD54L	99	94.370	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0027297	Rad54l	100	96.386	ENSCGRG00001014807	Rad54l	100	96.386	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0027297	Rad54l	100	96.386	ENSCGRG00000016038	Rad54l	100	96.386	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0027297	Rad54l	99	77.450	ENSCSEG00000001983	rad54l	99	77.450	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0027297	Rad54l	87	81.028	ENSCVAG00000019561	rad54l	99	81.028	Cyprinodon_variegatus
MGP_SPRETEiJ_G0027297	Rad54l	99	78.954	ENSDARG00000018623	rad54l	99	78.954	Danio_rerio
MGP_SPRETEiJ_G0027297	Rad54l	100	93.574	ENSDNOG00000003395	RAD54L	100	93.574	Dasypus_novemcinctus
MGP_SPRETEiJ_G0027297	Rad54l	99	84.941	ENSDORG00000002632	Rad54l	99	84.941	Dipodomys_ordii
MGP_SPRETEiJ_G0027297	Rad54l	99	55.851	FBgn0002989	okr	95	55.851	Drosophila_melanogaster
MGP_SPRETEiJ_G0027297	Rad54l	78	95.161	ENSETEG00000000550	RAD54L	78	95.161	Echinops_telfairi
MGP_SPRETEiJ_G0027297	Rad54l	99	94.228	ENSEASG00005004511	RAD54L	99	94.228	Equus_asinus_asinus
MGP_SPRETEiJ_G0027297	Rad54l	99	94.638	ENSECAG00000008760	RAD54L	99	95.122	Equus_caballus
MGP_SPRETEiJ_G0027297	Rad54l	100	87.952	ENSEEUG00000008113	RAD54L	100	87.952	Erinaceus_europaeus
MGP_SPRETEiJ_G0027297	Rad54l	99	79.973	ENSELUG00000002295	rad54l	99	79.973	Esox_lucius
MGP_SPRETEiJ_G0027297	Rad54l	100	93.708	ENSFCAG00000003444	RAD54L	100	93.708	Felis_catus
MGP_SPRETEiJ_G0027297	Rad54l	99	85.141	ENSFALG00000009480	RAD54L	99	85.141	Ficedula_albicollis
MGP_SPRETEiJ_G0027297	Rad54l	99	95.040	ENSFDAG00000007806	RAD54L	99	95.040	Fukomys_damarensis
MGP_SPRETEiJ_G0027297	Rad54l	61	76.703	ENSFHEG00000009824	rad54l	78	76.703	Fundulus_heteroclitus
MGP_SPRETEiJ_G0027297	Rad54l	99	77.987	ENSGMOG00000014568	rad54l	99	77.987	Gadus_morhua
MGP_SPRETEiJ_G0027297	Rad54l	99	84.718	ENSGALG00000010356	RAD54L	92	84.718	Gallus_gallus
MGP_SPRETEiJ_G0027297	Rad54l	91	78.171	ENSGAFG00000011110	rad54l	100	78.171	Gambusia_affinis
MGP_SPRETEiJ_G0027297	Rad54l	99	78.715	ENSGACG00000003111	rad54l	97	78.715	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0027297	Rad54l	99	85.657	ENSGAGG00000014089	RAD54L	96	85.657	Gopherus_agassizii
MGP_SPRETEiJ_G0027297	Rad54l	99	94.504	ENSGGOG00000010602	RAD54L	99	94.504	Gorilla_gorilla
MGP_SPRETEiJ_G0027297	Rad54l	99	76.810	ENSHBUG00000007793	rad54l	99	76.810	Haplochromis_burtoni
MGP_SPRETEiJ_G0027297	Rad54l	99	94.906	ENSHGLG00000000753	RAD54L	99	94.906	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0027297	Rad54l	99	94.772	ENSHGLG00100016987	RAD54L	99	94.772	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0027297	Rad54l	99	77.733	ENSIPUG00000015999	rad54l	99	80.830	Ictalurus_punctatus
MGP_SPRETEiJ_G0027297	Rad54l	99	95.308	ENSSTOG00000029125	RAD54L	99	95.308	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0027297	Rad54l	99	82.282	ENSJJAG00000000235	-	99	82.148	Jaculus_jaculus
MGP_SPRETEiJ_G0027297	Rad54l	99	77.957	ENSKMAG00000009944	rad54l	99	77.957	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0027297	Rad54l	99	80.376	ENSLBEG00000014617	rad54l	99	81.898	Labrus_bergylta
MGP_SPRETEiJ_G0027297	Rad54l	99	81.233	ENSLOCG00000004144	rad54l	100	82.938	Lepisosteus_oculatus
MGP_SPRETEiJ_G0027297	Rad54l	99	95.168	ENSLAFG00000007583	RAD54L	99	95.168	Loxodonta_africana
MGP_SPRETEiJ_G0027297	Rad54l	99	94.504	ENSMFAG00000031241	RAD54L	99	94.504	Macaca_fascicularis
MGP_SPRETEiJ_G0027297	Rad54l	99	94.504	ENSMMUG00000011568	RAD54L	99	94.504	Macaca_mulatta
MGP_SPRETEiJ_G0027297	Rad54l	99	94.504	ENSMNEG00000038562	RAD54L	99	94.504	Macaca_nemestrina
MGP_SPRETEiJ_G0027297	Rad54l	99	94.638	ENSMLEG00000038145	RAD54L	99	94.638	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0027297	Rad54l	99	79.116	ENSMAMG00000022180	rad54l	100	81.818	Mastacembelus_armatus
MGP_SPRETEiJ_G0027297	Rad54l	99	76.542	ENSMZEG00005018081	rad54l	99	76.542	Maylandia_zebra
MGP_SPRETEiJ_G0027297	Rad54l	99	84.832	ENSMGAG00000010634	RAD54L	99	84.832	Meleagris_gallopavo
MGP_SPRETEiJ_G0027297	Rad54l	100	96.252	ENSMAUG00000020076	Rad54l	100	96.252	Mesocricetus_auratus
MGP_SPRETEiJ_G0027297	Rad54l	99	95.979	ENSMICG00000003266	RAD54L	99	95.979	Microcebus_murinus
MGP_SPRETEiJ_G0027297	Rad54l	100	96.653	ENSMOCG00000001778	Rad54l	100	96.653	Microtus_ochrogaster
MGP_SPRETEiJ_G0027297	Rad54l	99	76.139	ENSMALG00000021148	rad54l	99	76.139	Monopterus_albus
MGP_SPRETEiJ_G0027297	Rad54l	100	93.880	MGP_CAROLIEiJ_G0026325	Rad54l	100	93.880	Mus_caroli
MGP_SPRETEiJ_G0027297	Rad54l	100	99.866	ENSMUSG00000028702	Rad54l	100	99.866	Mus_musculus
MGP_SPRETEiJ_G0027297	Rad54l	100	98.795	MGP_PahariEiJ_G0028657	Rad54l	100	98.795	Mus_pahari
MGP_SPRETEiJ_G0027297	Rad54l	99	93.842	ENSMPUG00000012883	RAD54L	99	93.842	Mustela_putorius_furo
MGP_SPRETEiJ_G0027297	Rad54l	99	95.168	ENSMLUG00000003763	RAD54L	99	95.168	Myotis_lucifugus
MGP_SPRETEiJ_G0027297	Rad54l	100	94.244	ENSNGAG00000024213	Rad54l	100	94.244	Nannospalax_galili
MGP_SPRETEiJ_G0027297	Rad54l	99	94.370	ENSNLEG00000016548	RAD54L	99	94.370	Nomascus_leucogenys
MGP_SPRETEiJ_G0027297	Rad54l	90	84.320	ENSMEUG00000006793	RAD54L	99	84.320	Notamacropus_eugenii
MGP_SPRETEiJ_G0027297	Rad54l	91	95.486	ENSOPRG00000016016	RAD54L	91	95.486	Ochotona_princeps
MGP_SPRETEiJ_G0027297	Rad54l	100	95.448	ENSODEG00000008519	RAD54L	99	95.448	Octodon_degus
MGP_SPRETEiJ_G0027297	Rad54l	99	76.676	ENSONIG00000007659	rad54l	99	76.676	Oreochromis_niloticus
MGP_SPRETEiJ_G0027297	Rad54l	100	94.244	ENSOCUG00000005229	RAD54L	100	94.244	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0027297	Rad54l	99	77.584	ENSORLG00000002958	rad54l	99	78.523	Oryzias_latipes
MGP_SPRETEiJ_G0027297	Rad54l	99	78.658	ENSORLG00020006554	rad54l	99	81.378	Oryzias_latipes_hni
MGP_SPRETEiJ_G0027297	Rad54l	99	78.389	ENSORLG00015002907	rad54l	99	78.658	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0027297	Rad54l	99	78.658	ENSOMEG00000007770	rad54l	99	78.792	Oryzias_melastigma
MGP_SPRETEiJ_G0027297	Rad54l	100	94.259	ENSOARG00000002264	RAD54L	99	94.259	Ovis_aries
MGP_SPRETEiJ_G0027297	Rad54l	99	94.370	ENSPPAG00000031222	RAD54L	99	94.370	Pan_paniscus
MGP_SPRETEiJ_G0027297	Rad54l	100	93.708	ENSPPRG00000010317	RAD54L	100	93.708	Panthera_pardus
MGP_SPRETEiJ_G0027297	Rad54l	100	93.708	ENSPTIG00000012200	RAD54L	100	93.708	Panthera_tigris_altaica
MGP_SPRETEiJ_G0027297	Rad54l	99	94.504	ENSPTRG00000000689	RAD54L	99	94.504	Pan_troglodytes
MGP_SPRETEiJ_G0027297	Rad54l	99	94.638	ENSPANG00000016295	RAD54L	99	94.638	Papio_anubis
MGP_SPRETEiJ_G0027297	Rad54l	99	76.882	ENSPKIG00000016172	rad54l	99	76.882	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0027297	Rad54l	99	85.637	ENSPSIG00000003258	RAD54L	99	85.637	Pelodiscus_sinensis
MGP_SPRETEiJ_G0027297	Rad54l	99	75.201	ENSPMGG00000016335	rad54l	99	75.201	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0027297	Rad54l	100	96.386	ENSPEMG00000011422	Rad54l	100	96.386	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0027297	Rad54l	99	70.628	ENSPMAG00000007719	rad54l	99	70.628	Petromyzon_marinus
MGP_SPRETEiJ_G0027297	Rad54l	99	87.131	ENSPCIG00000029032	RAD54L	99	87.131	Phascolarctos_cinereus
MGP_SPRETEiJ_G0027297	Rad54l	85	80.818	ENSPFOG00000013732	rad54l	100	80.818	Poecilia_formosa
MGP_SPRETEiJ_G0027297	Rad54l	81	79.383	ENSPLAG00000023416	rad54l	99	79.383	Poecilia_latipinna
MGP_SPRETEiJ_G0027297	Rad54l	91	78.319	ENSPMEG00000008299	rad54l	100	78.319	Poecilia_mexicana
MGP_SPRETEiJ_G0027297	Rad54l	99	76.676	ENSPREG00000019955	rad54l	99	76.676	Poecilia_reticulata
MGP_SPRETEiJ_G0027297	Rad54l	94	93.440	ENSPPYG00000001398	RAD54L	99	93.440	Pongo_abelii
MGP_SPRETEiJ_G0027297	Rad54l	80	93.689	ENSPCAG00000005323	RAD54L	80	93.689	Procavia_capensis
MGP_SPRETEiJ_G0027297	Rad54l	100	95.582	ENSPCOG00000015423	RAD54L	100	95.582	Propithecus_coquereli
MGP_SPRETEiJ_G0027297	Rad54l	99	73.077	ENSPNYG00000002942	rad54l	99	73.077	Pundamilia_nyererei
MGP_SPRETEiJ_G0027297	Rad54l	99	79.223	ENSPNAG00000012483	rad54l	99	79.223	Pygocentrus_nattereri
MGP_SPRETEiJ_G0027297	Rad54l	100	97.992	ENSRNOG00000013148	Rad54l	99	97.992	Rattus_norvegicus
MGP_SPRETEiJ_G0027297	Rad54l	99	94.370	ENSRBIG00000043495	RAD54L	99	94.370	Rhinopithecus_bieti
MGP_SPRETEiJ_G0027297	Rad54l	99	94.504	ENSRROG00000020844	RAD54L	99	94.504	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0027297	Rad54l	80	47.920	YGL163C	RAD54	71	48.382	Saccharomyces_cerevisiae
MGP_SPRETEiJ_G0027297	Rad54l	99	94.772	ENSSBOG00000024672	RAD54L	99	94.772	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0027297	Rad54l	99	87.600	ENSSHAG00000000110	RAD54L	99	87.600	Sarcophilus_harrisii
MGP_SPRETEiJ_G0027297	Rad54l	99	79.625	ENSSDUG00000019147	rad54l	99	79.625	Seriola_dumerili
MGP_SPRETEiJ_G0027297	Rad54l	99	79.893	ENSSLDG00000012330	rad54l	99	79.893	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0027297	Rad54l	83	87.961	ENSSARG00000006689	RAD54L	100	87.961	Sorex_araneus
MGP_SPRETEiJ_G0027297	Rad54l	99	78.898	ENSSPAG00000011016	rad54l	99	78.898	Stegastes_partitus
MGP_SPRETEiJ_G0027297	Rad54l	99	94.236	ENSSSCG00000003905	RAD54L	99	94.236	Sus_scrofa
MGP_SPRETEiJ_G0027297	Rad54l	99	84.605	ENSTGUG00000008233	RAD54L	99	84.739	Taeniopygia_guttata
MGP_SPRETEiJ_G0027297	Rad54l	99	75.067	ENSTRUG00000008410	rad54l	99	75.067	Takifugu_rubripes
MGP_SPRETEiJ_G0027297	Rad54l	99	75.302	ENSTNIG00000004716	rad54l	99	75.737	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0027297	Rad54l	100	85.944	ENSTTRG00000006315	RAD54L	100	85.944	Tursiops_truncatus
MGP_SPRETEiJ_G0027297	Rad54l	99	93.927	ENSUAMG00000011824	RAD54L	99	93.927	Ursus_americanus
MGP_SPRETEiJ_G0027297	Rad54l	99	92.848	ENSUMAG00000023603	RAD54L	99	92.848	Ursus_maritimus
MGP_SPRETEiJ_G0027297	Rad54l	99	94.370	ENSVVUG00000007201	RAD54L	99	94.370	Vulpes_vulpes
MGP_SPRETEiJ_G0027297	Rad54l	96	77.747	ENSXETG00000004369	rad54l	99	77.747	Xenopus_tropicalis
MGP_SPRETEiJ_G0027297	Rad54l	55	74.515	ENSXCOG00000016028	rad54l	81	78.591	Xiphophorus_couchianus