EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0027432 (Gene tree)
Gene ID: -
Gene Symbol: Yrdc
Alias: IRIP
Full Name: yrdC domain containing (E.coli)
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 4442 bases
Position: chr4:120905791-120910232
Accession: 2387201
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0066817	Sua5_yciO_yrdC	PF01300.18	1.3e-43	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0066818	-	512	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0066816	-	811	-	MGP_SPRETEiJ_P0066816	212 (aa)	-	-
MGP_SPRETEiJ_T0066817	-	1370	-	MGP_SPRETEiJ_P0066817	280 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0027432's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0027432's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0027432	Yrdc	99	86.331	ENSG00000196449	YRDC	99	86.331	Homo_sapiens
MGP_SPRETEiJ_G0027432	Yrdc	75	61.244	ENSAPOG00000024293	yrdc	79	61.244	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0027432	Yrdc	67	87.166	ENSAMEG00000001173	YRDC	99	87.166	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0027432	Yrdc	75	63.158	ENSACIG00000017330	yrdc	77	63.158	Amphilophus_citrinellus
MGP_SPRETEiJ_G0027432	Yrdc	75	61.722	ENSAOCG00000021647	yrdc	79	61.722	Amphiprion_ocellaris
MGP_SPRETEiJ_G0027432	Yrdc	75	61.722	ENSAPEG00000006164	yrdc	79	61.722	Amphiprion_percula
MGP_SPRETEiJ_G0027432	Yrdc	73	63.725	ENSATEG00000010086	yrdc	75	63.725	Anabas_testudineus
MGP_SPRETEiJ_G0027432	Yrdc	69	65.979	ENSACAG00000017203	YRDC	100	63.850	Anolis_carolinensis
MGP_SPRETEiJ_G0027432	Yrdc	97	79.197	ENSANAG00000031052	-	97	79.197	Aotus_nancymaae
MGP_SPRETEiJ_G0027432	Yrdc	79	87.330	ENSANAG00000028788	-	93	87.330	Aotus_nancymaae
MGP_SPRETEiJ_G0027432	Yrdc	81	59.389	ENSACLG00000027775	yrdc	84	59.389	Astatotilapia_calliptera
MGP_SPRETEiJ_G0027432	Yrdc	83	58.190	ENSAMXG00000037791	yrdc	85	59.524	Astyanax_mexicanus
MGP_SPRETEiJ_G0027432	Yrdc	99	84.229	ENSBTAG00000006510	YRDC	99	84.229	Bos_taurus
MGP_SPRETEiJ_G0027432	Yrdc	83	37.339	WBGene00012997	Y48C3A.18	100	37.600	Caenorhabditis_elegans
MGP_SPRETEiJ_G0027432	Yrdc	99	86.691	ENSCJAG00000002078	YRDC	76	86.691	Callithrix_jacchus
MGP_SPRETEiJ_G0027432	Yrdc	100	78.214	ENSCAFG00000003253	YRDC	99	78.214	Canis_familiaris
MGP_SPRETEiJ_G0027432	Yrdc	100	80.357	ENSCAFG00020007843	YRDC	99	80.357	Canis_lupus_dingo
MGP_SPRETEiJ_G0027432	Yrdc	99	84.229	ENSCHIG00000007882	YRDC	99	84.229	Capra_hircus
MGP_SPRETEiJ_G0027432	Yrdc	64	89.944	ENSTSYG00000005555	YRDC	62	90.805	Carlito_syrichta
MGP_SPRETEiJ_G0027432	Yrdc	100	83.571	ENSCPOG00000036144	YRDC	100	83.571	Cavia_porcellus
MGP_SPRETEiJ_G0027432	Yrdc	99	86.691	ENSCCAG00000028891	YRDC	99	86.691	Cebus_capucinus
MGP_SPRETEiJ_G0027432	Yrdc	99	85.252	ENSCATG00000036928	YRDC	99	85.252	Cercocebus_atys
MGP_SPRETEiJ_G0027432	Yrdc	100	86.071	ENSCLAG00000015012	YRDC	100	86.071	Chinchilla_lanigera
MGP_SPRETEiJ_G0027432	Yrdc	99	85.252	ENSCSAG00000001116	YRDC	99	85.252	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0027432	Yrdc	99	81.340	ENSCHOG00000005500	YRDC	100	81.340	Choloepus_hoffmanni
MGP_SPRETEiJ_G0027432	Yrdc	77	67.593	ENSCPBG00000018446	YRDC	92	67.593	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0027432	Yrdc	73	49.765	ENSCING00000007564	-	98	49.765	Ciona_intestinalis
MGP_SPRETEiJ_G0027432	Yrdc	73	47.867	ENSCSAVG00000009982	-	98	47.867	Ciona_savignyi
MGP_SPRETEiJ_G0027432	Yrdc	99	85.612	ENSCANG00000031111	YRDC	99	85.612	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0027432	Yrdc	99	86.643	ENSCGRG00001000829	-	77	86.691	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0027432	Yrdc	100	93.214	ENSCGRG00001014496	-	100	93.214	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0027432	Yrdc	75	61.722	ENSCSEG00000019075	yrdc	75	61.722	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0027432	Yrdc	82	56.277	ENSCVAG00000017355	yrdc	86	56.277	Cyprinodon_variegatus
MGP_SPRETEiJ_G0027432	Yrdc	81	57.826	ENSDARG00000041428	yrdc	95	57.826	Danio_rerio
MGP_SPRETEiJ_G0027432	Yrdc	99	84.588	ENSDNOG00000038789	-	100	84.766	Dasypus_novemcinctus
MGP_SPRETEiJ_G0027432	Yrdc	71	61.000	ENSDNOG00000036198	-	97	61.000	Dasypus_novemcinctus
MGP_SPRETEiJ_G0027432	Yrdc	70	90.863	ENSDORG00000008788	Yrdc	87	90.863	Dipodomys_ordii
MGP_SPRETEiJ_G0027432	Yrdc	71	48.515	FBgn0061361	CG33786	81	48.515	Drosophila_melanogaster
MGP_SPRETEiJ_G0027432	Yrdc	100	72.143	ENSETEG00000003442	YRDC	100	72.143	Echinops_telfairi
MGP_SPRETEiJ_G0027432	Yrdc	74	54.854	ENSEBUG00000014080	yrdc	85	54.854	Eptatretus_burgeri
MGP_SPRETEiJ_G0027432	Yrdc	99	86.022	ENSEASG00005012253	YRDC	99	86.022	Equus_asinus_asinus
MGP_SPRETEiJ_G0027432	Yrdc	99	86.380	ENSECAG00000022522	YRDC	99	86.380	Equus_caballus
MGP_SPRETEiJ_G0027432	Yrdc	79	60.619	ENSELUG00000018071	yrdc	73	60.619	Esox_lucius
MGP_SPRETEiJ_G0027432	Yrdc	100	86.786	ENSFCAG00000011018	YRDC	100	86.786	Felis_catus
MGP_SPRETEiJ_G0027432	Yrdc	69	31.280	ENSFALG00000011333	-	53	31.280	Ficedula_albicollis
MGP_SPRETEiJ_G0027432	Yrdc	68	74.869	ENSFALG00000000964	YRDC	89	73.846	Ficedula_albicollis
MGP_SPRETEiJ_G0027432	Yrdc	95	53.333	ENSFHEG00000001029	yrdc	96	54.217	Fundulus_heteroclitus
MGP_SPRETEiJ_G0027432	Yrdc	73	63.725	ENSGMOG00000015635	yrdc	97	63.725	Gadus_morhua
MGP_SPRETEiJ_G0027432	Yrdc	86	64.777	ENSGALG00000029001	YRDC	93	64.777	Gallus_gallus
MGP_SPRETEiJ_G0027432	Yrdc	70	32.278	ENSGALG00000025899	-	67	31.754	Gallus_gallus
MGP_SPRETEiJ_G0027432	Yrdc	82	55.844	ENSGAFG00000008396	yrdc	85	55.844	Gambusia_affinis
MGP_SPRETEiJ_G0027432	Yrdc	73	60.680	ENSGACG00000013878	yrdc	84	60.680	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0027432	Yrdc	79	68.018	ENSGAGG00000014968	YRDC	96	68.018	Gopherus_agassizii
MGP_SPRETEiJ_G0027432	Yrdc	99	86.331	ENSGGOG00000007619	YRDC	99	86.331	Gorilla_gorilla
MGP_SPRETEiJ_G0027432	Yrdc	81	59.825	ENSHBUG00000009298	yrdc	84	59.825	Haplochromis_burtoni
MGP_SPRETEiJ_G0027432	Yrdc	100	86.429	ENSHGLG00000014075	YRDC	100	86.429	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0027432	Yrdc	100	76.786	ENSHGLG00100002734	YRDC	100	76.786	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0027432	Yrdc	81	57.080	ENSHCOG00000006598	yrdc	88	57.080	Hippocampus_comes
MGP_SPRETEiJ_G0027432	Yrdc	81	58.850	ENSIPUG00000014985	yrdc	92	58.850	Ictalurus_punctatus
MGP_SPRETEiJ_G0027432	Yrdc	99	86.738	ENSSTOG00000001643	YRDC	99	86.738	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0027432	Yrdc	83	58.547	ENSKMAG00000013468	yrdc	86	58.547	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0027432	Yrdc	81	59.389	ENSLBEG00000027501	yrdc	84	59.389	Labrus_bergylta
MGP_SPRETEiJ_G0027432	Yrdc	74	31.004	ENSLACG00000017624	si:ch211-153b23.3	66	31.004	Latimeria_chalumnae
MGP_SPRETEiJ_G0027432	Yrdc	74	64.734	ENSLACG00000010689	YRDC	95	64.734	Latimeria_chalumnae
MGP_SPRETEiJ_G0027432	Yrdc	75	63.810	ENSLOCG00000003321	yrdc	86	63.810	Lepisosteus_oculatus
MGP_SPRETEiJ_G0027432	Yrdc	100	84.643	ENSLAFG00000017556	YRDC	100	84.643	Loxodonta_africana
MGP_SPRETEiJ_G0027432	Yrdc	75	89.524	ENSMFAG00000003487	YRDC	99	89.524	Macaca_fascicularis
MGP_SPRETEiJ_G0027432	Yrdc	99	85.252	ENSMMUG00000005372	YRDC	74	85.252	Macaca_mulatta
MGP_SPRETEiJ_G0027432	Yrdc	99	85.252	ENSMNEG00000029348	YRDC	99	85.252	Macaca_nemestrina
MGP_SPRETEiJ_G0027432	Yrdc	53	87.919	ENSMLEG00000041122	YRDC	99	87.919	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0027432	Yrdc	77	60.829	ENSMAMG00000007315	yrdc	79	60.829	Mastacembelus_armatus
MGP_SPRETEiJ_G0027432	Yrdc	81	59.389	ENSMZEG00005006948	yrdc	84	59.389	Maylandia_zebra
MGP_SPRETEiJ_G0027432	Yrdc	72	71.287	ENSMGAG00000002833	YRDC	99	71.287	Meleagris_gallopavo
MGP_SPRETEiJ_G0027432	Yrdc	69	31.754	ENSMGAG00000005489	-	53	31.754	Meleagris_gallopavo
MGP_SPRETEiJ_G0027432	Yrdc	99	86.022	ENSMICG00000031688	YRDC	100	86.022	Microcebus_murinus
MGP_SPRETEiJ_G0027432	Yrdc	100	90.566	ENSMOCG00000000164	-	81	91.866	Microtus_ochrogaster
MGP_SPRETEiJ_G0027432	Yrdc	83	58.120	ENSMMOG00000002119	yrdc	86	58.120	Mola_mola
MGP_SPRETEiJ_G0027432	Yrdc	98	70.463	ENSMODG00000017750	YRDC	98	70.463	Monodelphis_domestica
MGP_SPRETEiJ_G0027432	Yrdc	81	59.649	ENSMALG00000012471	yrdc	85	59.649	Monopterus_albus
MGP_SPRETEiJ_G0027432	Yrdc	99	97.630	MGP_CAROLIEiJ_G0026453	Yrdc	98	99.029	Mus_caroli
MGP_SPRETEiJ_G0027432	Yrdc	100	99.643	ENSMUSG00000028889	Yrdc	100	100.000	Mus_musculus
MGP_SPRETEiJ_G0027432	Yrdc	100	98.214	MGP_PahariEiJ_G0028784	Yrdc	100	99.048	Mus_pahari
MGP_SPRETEiJ_G0027432	Yrdc	78	87.156	ENSMPUG00000014542	YRDC	87	87.156	Mustela_putorius_furo
MGP_SPRETEiJ_G0027432	Yrdc	99	63.043	ENSMLUG00000028796	-	98	63.043	Myotis_lucifugus
MGP_SPRETEiJ_G0027432	Yrdc	70	80.513	ENSMLUG00000024310	-	96	80.513	Myotis_lucifugus
MGP_SPRETEiJ_G0027432	Yrdc	99	84.058	ENSMLUG00000000955	-	99	84.058	Myotis_lucifugus
MGP_SPRETEiJ_G0027432	Yrdc	100	84.286	ENSNGAG00000019099	Yrdc	100	84.286	Nannospalax_galili
MGP_SPRETEiJ_G0027432	Yrdc	83	58.974	ENSNBRG00000009475	yrdc	86	58.974	Neolamprologus_brichardi
MGP_SPRETEiJ_G0027432	Yrdc	99	85.971	ENSNLEG00000011665	YRDC	99	85.971	Nomascus_leucogenys
MGP_SPRETEiJ_G0027432	Yrdc	77	82.791	ENSMEUG00000005068	YRDC	100	82.791	Notamacropus_eugenii
MGP_SPRETEiJ_G0027432	Yrdc	100	85.000	ENSODEG00000007401	YRDC	100	92.381	Octodon_degus
MGP_SPRETEiJ_G0027432	Yrdc	83	58.974	ENSONIG00000016213	yrdc	97	58.974	Oreochromis_niloticus
MGP_SPRETEiJ_G0027432	Yrdc	100	87.143	ENSOCUG00000005384	YRDC	96	87.143	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0027432	Yrdc	73	59.804	ENSORLG00000014393	yrdc	75	59.804	Oryzias_latipes
MGP_SPRETEiJ_G0027432	Yrdc	81	55.652	ENSORLG00020019663	yrdc	86	55.652	Oryzias_latipes_hni
MGP_SPRETEiJ_G0027432	Yrdc	81	55.217	ENSORLG00015004625	yrdc	86	55.217	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0027432	Yrdc	87	54.098	ENSOMEG00000018550	yrdc	92	54.098	Oryzias_melastigma
MGP_SPRETEiJ_G0027432	Yrdc	99	84.783	ENSOGAG00000030474	YRDC	100	84.783	Otolemur_garnettii
MGP_SPRETEiJ_G0027432	Yrdc	93	83.525	ENSOARG00000019873	YRDC	95	82.463	Ovis_aries
MGP_SPRETEiJ_G0027432	Yrdc	53	89.116	ENSPPAG00000039722	-	99	89.116	Pan_paniscus
MGP_SPRETEiJ_G0027432	Yrdc	100	86.429	ENSPPRG00000007752	YRDC	100	86.429	Panthera_pardus
MGP_SPRETEiJ_G0027432	Yrdc	90	60.870	ENSPTIG00000019821	YRDC	97	61.411	Panthera_tigris_altaica
MGP_SPRETEiJ_G0027432	Yrdc	99	86.691	ENSPTRG00000000557	YRDC	99	86.691	Pan_troglodytes
MGP_SPRETEiJ_G0027432	Yrdc	99	85.252	ENSPANG00000006487	YRDC	75	85.252	Papio_anubis
MGP_SPRETEiJ_G0027432	Yrdc	78	60.369	ENSPKIG00000004574	yrdc	78	60.369	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0027432	Yrdc	92	60.920	ENSPSIG00000006483	YRDC	92	60.920	Pelodiscus_sinensis
MGP_SPRETEiJ_G0027432	Yrdc	73	62.255	ENSPMGG00000004184	yrdc	78	62.255	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0027432	Yrdc	64	93.333	ENSPEMG00000016985	Yrdc	90	80.631	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0027432	Yrdc	63	57.303	ENSPMAG00000002905	yrdc	96	57.303	Petromyzon_marinus
MGP_SPRETEiJ_G0027432	Yrdc	94	73.978	ENSPCIG00000025731	YRDC	98	72.954	Phascolarctos_cinereus
MGP_SPRETEiJ_G0027432	Yrdc	82	56.277	ENSPFOG00000023097	yrdc	85	56.277	Poecilia_formosa
MGP_SPRETEiJ_G0027432	Yrdc	82	55.844	ENSPLAG00000020882	yrdc	85	55.844	Poecilia_latipinna
MGP_SPRETEiJ_G0027432	Yrdc	82	56.277	ENSPMEG00000013237	yrdc	86	56.277	Poecilia_mexicana
MGP_SPRETEiJ_G0027432	Yrdc	82	56.277	ENSPREG00000005285	yrdc	85	56.277	Poecilia_reticulata
MGP_SPRETEiJ_G0027432	Yrdc	85	86.498	ENSPPYG00000001523	-	97	86.498	Pongo_abelii
MGP_SPRETEiJ_G0027432	Yrdc	99	83.032	ENSPCAG00000016850	YRDC	99	83.032	Procavia_capensis
MGP_SPRETEiJ_G0027432	Yrdc	99	85.663	ENSPCOG00000013214	YRDC	99	85.663	Propithecus_coquereli
MGP_SPRETEiJ_G0027432	Yrdc	99	85.870	ENSPVAG00000010147	YRDC	99	85.870	Pteropus_vampyrus
MGP_SPRETEiJ_G0027432	Yrdc	81	59.825	ENSPNYG00000013956	yrdc	84	59.825	Pundamilia_nyererei
MGP_SPRETEiJ_G0027432	Yrdc	69	62.371	ENSPNAG00000015625	yrdc	79	62.371	Pygocentrus_nattereri
MGP_SPRETEiJ_G0027432	Yrdc	100	96.786	ENSRNOG00000025424	Yrdc	100	96.786	Rattus_norvegicus
MGP_SPRETEiJ_G0027432	Yrdc	99	85.252	ENSRBIG00000032289	YRDC	99	85.252	Rhinopithecus_bieti
MGP_SPRETEiJ_G0027432	Yrdc	75	89.952	ENSRROG00000039370	YRDC	71	89.952	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0027432	Yrdc	72	90.547	ENSSBOG00000018937	YRDC	86	90.547	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0027432	Yrdc	52	82.877	ENSSHAG00000013957	-	100	81.757	Sarcophilus_harrisii
MGP_SPRETEiJ_G0027432	Yrdc	74	63.107	ENSSFOG00015006128	yrdc	88	63.107	Scleropages_formosus
MGP_SPRETEiJ_G0027432	Yrdc	75	62.736	ENSSMAG00000005195	yrdc	79	62.736	Scophthalmus_maximus
MGP_SPRETEiJ_G0027432	Yrdc	83	57.872	ENSSDUG00000009775	yrdc	87	57.872	Seriola_dumerili
MGP_SPRETEiJ_G0027432	Yrdc	67	30.872	ENSSDUG00000006631	-	71	30.872	Seriola_dumerili
MGP_SPRETEiJ_G0027432	Yrdc	82	33.155	ENSSDUG00000006736	-	90	31.792	Seriola_dumerili
MGP_SPRETEiJ_G0027432	Yrdc	83	57.872	ENSSLDG00000003196	yrdc	87	57.872	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0027432	Yrdc	67	30.612	ENSSLDG00000008694	-	71	30.612	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0027432	Yrdc	93	59.073	ENSSPUG00000003946	YRDC	97	59.073	Sphenodon_punctatus
MGP_SPRETEiJ_G0027432	Yrdc	83	55.556	ENSSPAG00000012559	yrdc	86	55.556	Stegastes_partitus
MGP_SPRETEiJ_G0027432	Yrdc	100	85.714	ENSSSCG00000040425	YRDC	100	85.714	Sus_scrofa
MGP_SPRETEiJ_G0027432	Yrdc	51	77.778	ENSTGUG00000001507	YRDC	98	77.778	Taeniopygia_guttata
MGP_SPRETEiJ_G0027432	Yrdc	71	58.500	ENSTRUG00000005923	yrdc	74	58.294	Takifugu_rubripes
MGP_SPRETEiJ_G0027432	Yrdc	56	88.608	ENSTBEG00000008863	YRDC	96	90.000	Tupaia_belangeri
MGP_SPRETEiJ_G0027432	Yrdc	53	86.486	ENSTTRG00000013538	-	99	86.486	Tursiops_truncatus
MGP_SPRETEiJ_G0027432	Yrdc	73	88.177	ENSUAMG00000006150	YRDC	100	88.177	Ursus_americanus
MGP_SPRETEiJ_G0027432	Yrdc	84	73.191	ENSVPAG00000006642	YRDC	100	73.191	Vicugna_pacos
MGP_SPRETEiJ_G0027432	Yrdc	54	84.211	ENSVVUG00000023132	-	50	84.211	Vulpes_vulpes
MGP_SPRETEiJ_G0027432	Yrdc	82	63.362	ENSXETG00000014420	yrdc	98	63.090	Xenopus_tropicalis
MGP_SPRETEiJ_G0027432	Yrdc	82	55.411	ENSXCOG00000000829	yrdc	95	55.411	Xiphophorus_couchianus
MGP_SPRETEiJ_G0027432	Yrdc	82	54.545	ENSXMAG00000014606	yrdc	80	54.545	Xiphophorus_maculatus