EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0027446 (Gene tree)
Gene ID: -
Gene Symbol: Lsm10
Alias: -
Full Name: U7 snRNP-specific Sm-like protein LSM10
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 1974 bases
Position: chr4:122261759-122263732
Accession: 2151045
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0066871	LSM	PF01423.22	5e-13	1	1
MGP_SPRETEiJ_P0066869	LSM	PF01423.22	9.2e-13	1	1
MGP_SPRETEiJ_P0066870	LSM	PF01423.22	9.2e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0066869	-	942	-	MGP_SPRETEiJ_P0066869	122 (aa)	-	UPI000002931A
MGP_SPRETEiJ_T0066870	-	807	-	MGP_SPRETEiJ_P0066870	122 (aa)	-	UPI000002931A
MGP_SPRETEiJ_T0066871	-	352	-	MGP_SPRETEiJ_P0066871	93 (aa)	-	UPI00015F3B45

Gene Model

Click here to download MGP_SPRETEiJ_G0027446's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0027446's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0027446	Lsm10	75	31.507	MGP_SPRETEiJ_G0022395	Lsm2	77	31.507

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0027446	Lsm10	100	90.323	ENSG00000181817	LSM10	98	90.833	Homo_sapiens
MGP_SPRETEiJ_G0027446	Lsm10	100	93.548	ENSAMEG00000019854	LSM10	98	90.909	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0027446	Lsm10	97	66.949	ENSACIG00000015420	oscp1a	78	66.949	Amphilophus_citrinellus
MGP_SPRETEiJ_G0027446	Lsm10	98	69.231	ENSAOCG00000015607	LSM10	86	66.667	Amphiprion_ocellaris
MGP_SPRETEiJ_G0027446	Lsm10	95	71.591	ENSAOCG00000014654	-	95	69.565	Amphiprion_ocellaris
MGP_SPRETEiJ_G0027446	Lsm10	95	71.591	ENSAOCG00000015618	LSM10	95	69.565	Amphiprion_ocellaris
MGP_SPRETEiJ_G0027446	Lsm10	95	71.591	ENSAPEG00000021845	-	95	69.565	Amphiprion_percula
MGP_SPRETEiJ_G0027446	Lsm10	98	69.231	ENSAPEG00000021851	LSM10	86	66.667	Amphiprion_percula
MGP_SPRETEiJ_G0027446	Lsm10	96	65.169	ENSATEG00000006310	oscp1a	83	63.393	Anabas_testudineus
MGP_SPRETEiJ_G0027446	Lsm10	99	70.652	ENSACAG00000001231	LSM10	95	69.231	Anolis_carolinensis
MGP_SPRETEiJ_G0027446	Lsm10	100	89.247	ENSANAG00000031489	-	98	90.000	Aotus_nancymaae
MGP_SPRETEiJ_G0027446	Lsm10	100	90.323	ENSANAG00000018759	-	98	91.667	Aotus_nancymaae
MGP_SPRETEiJ_G0027446	Lsm10	96	67.416	ENSACLG00000004728	oscp1a	94	67.241	Astatotilapia_calliptera
MGP_SPRETEiJ_G0027446	Lsm10	97	71.111	ENSAMXG00000025301	oscp1a	98	67.227	Astyanax_mexicanus
MGP_SPRETEiJ_G0027446	Lsm10	100	92.473	ENSBTAG00000024096	LSM10	98	90.833	Bos_taurus
MGP_SPRETEiJ_G0027446	Lsm10	100	89.247	ENSCJAG00000044880	LSM10	98	90.833	Callithrix_jacchus
MGP_SPRETEiJ_G0027446	Lsm10	100	95.699	ENSCAFG00000003382	LSM10	98	94.215	Canis_familiaris
MGP_SPRETEiJ_G0027446	Lsm10	100	95.699	ENSCAFG00020008920	LSM10	98	94.215	Canis_lupus_dingo
MGP_SPRETEiJ_G0027446	Lsm10	100	92.473	ENSCHIG00000009398	LSM10	98	90.833	Capra_hircus
MGP_SPRETEiJ_G0027446	Lsm10	100	91.398	ENSCAPG00000012567	LSM10	98	90.083	Cavia_aperea
MGP_SPRETEiJ_G0027446	Lsm10	100	91.398	ENSCPOG00000039302	LSM10	98	90.083	Cavia_porcellus
MGP_SPRETEiJ_G0027446	Lsm10	100	90.323	ENSCCAG00000018913	-	98	91.667	Cebus_capucinus
MGP_SPRETEiJ_G0027446	Lsm10	100	90.323	ENSCCAG00000008378	-	98	90.000	Cebus_capucinus
MGP_SPRETEiJ_G0027446	Lsm10	100	91.398	ENSCATG00000006589	LSM10	98	92.500	Cercocebus_atys
MGP_SPRETEiJ_G0027446	Lsm10	100	93.548	ENSCLAG00000008633	LSM10	98	91.736	Chinchilla_lanigera
MGP_SPRETEiJ_G0027446	Lsm10	100	91.398	ENSCSAG00000000134	LSM10	98	92.500	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0027446	Lsm10	100	91.398	ENSCHOG00000008615	LSM10	98	91.057	Choloepus_hoffmanni
MGP_SPRETEiJ_G0027446	Lsm10	94	31.034	ENSCSAVG00000001896	-	87	30.392	Ciona_savignyi
MGP_SPRETEiJ_G0027446	Lsm10	100	91.398	ENSCANG00000019928	LSM10	98	92.500	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0027446	Lsm10	94	85.470	ENSCGRG00001022673	-	94	85.470	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0027446	Lsm10	100	95.699	ENSCGRG00001004317	-	99	95.868	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0027446	Lsm10	100	95.699	ENSCGRG00000014935	-	99	95.868	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0027446	Lsm10	94	85.470	ENSCGRG00000015514	-	94	85.470	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0027446	Lsm10	96	65.169	ENSCSEG00000010374	oscp1a	77	64.348	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0027446	Lsm10	99	69.565	ENSCVAG00000001536	oscp1a	90	65.546	Cyprinodon_variegatus
MGP_SPRETEiJ_G0027446	Lsm10	91	70.588	ENSDARG00000109563	CABZ01074453.1	99	70.588	Danio_rerio
MGP_SPRETEiJ_G0027446	Lsm10	100	72.043	ENSDARG00000101222	oscp1a	100	69.421	Danio_rerio
MGP_SPRETEiJ_G0027446	Lsm10	100	93.548	ENSDNOG00000036662	LSM10	98	94.167	Dasypus_novemcinctus
MGP_SPRETEiJ_G0027446	Lsm10	100	94.624	ENSDORG00000007579	Lsm10	98	93.388	Dipodomys_ordii
MGP_SPRETEiJ_G0027446	Lsm10	95	30.769	FBgn0033554	Lsm10	82	30.769	Drosophila_melanogaster
MGP_SPRETEiJ_G0027446	Lsm10	100	96.774	ENSETEG00000005703	LSM10	98	90.909	Echinops_telfairi
MGP_SPRETEiJ_G0027446	Lsm10	98	56.044	ENSEBUG00000001312	oscp1a	100	48.361	Eptatretus_burgeri
MGP_SPRETEiJ_G0027446	Lsm10	100	94.624	ENSEASG00005012194	LSM10	98	94.215	Equus_asinus_asinus
MGP_SPRETEiJ_G0027446	Lsm10	100	95.699	ENSECAG00000005071	LSM10	98	95.041	Equus_caballus
MGP_SPRETEiJ_G0027446	Lsm10	100	93.548	ENSEEUG00000012032	LSM10	98	92.562	Erinaceus_europaeus
MGP_SPRETEiJ_G0027446	Lsm10	100	70.968	ENSELUG00000007452	oscp1a	99	66.942	Esox_lucius
MGP_SPRETEiJ_G0027446	Lsm10	100	73.118	ENSFALG00000000851	LSM10	95	72.650	Ficedula_albicollis
MGP_SPRETEiJ_G0027446	Lsm10	100	90.323	ENSFDAG00000021056	LSM10	98	88.430	Fukomys_damarensis
MGP_SPRETEiJ_G0027446	Lsm10	90	71.429	ENSFHEG00000001058	oscp1a	95	68.182	Fundulus_heteroclitus
MGP_SPRETEiJ_G0027446	Lsm10	97	68.889	ENSGMOG00000019832	oscp1a	89	66.981	Gadus_morhua
MGP_SPRETEiJ_G0027446	Lsm10	100	75.269	ENSGALG00000002127	LSM10	98	73.554	Gallus_gallus
MGP_SPRETEiJ_G0027446	Lsm10	98	59.574	ENSGAFG00000016445	oscp1a	96	60.000	Gambusia_affinis
MGP_SPRETEiJ_G0027446	Lsm10	96	68.539	ENSGACG00000002329	oscp1a	95	64.655	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0027446	Lsm10	100	78.495	ENSGAGG00000024848	LSM10	98	74.380	Gopherus_agassizii
MGP_SPRETEiJ_G0027446	Lsm10	100	91.398	ENSGGOG00000003556	LSM10	98	92.500	Gorilla_gorilla
MGP_SPRETEiJ_G0027446	Lsm10	96	67.416	ENSHBUG00000001722	oscp1a	94	67.241	Haplochromis_burtoni
MGP_SPRETEiJ_G0027446	Lsm10	100	90.323	ENSHGLG00000011625	LSM10	98	89.256	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0027446	Lsm10	100	90.323	ENSHGLG00100001769	LSM10	98	89.256	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0027446	Lsm10	97	71.111	ENSIPUG00000005808	oscp1a	91	69.524	Ictalurus_punctatus
MGP_SPRETEiJ_G0027446	Lsm10	100	95.699	ENSSTOG00000000606	LSM10	98	93.388	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0027446	Lsm10	96	67.416	ENSKMAG00000012143	oscp1a	96	64.655	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0027446	Lsm10	100	64.516	ENSLBEG00000017764	oscp1a	98	64.167	Labrus_bergylta
MGP_SPRETEiJ_G0027446	Lsm10	100	73.118	ENSLACG00000015904	LSM10	93	71.901	Latimeria_chalumnae
MGP_SPRETEiJ_G0027446	Lsm10	100	69.892	ENSLOCG00000018277	oscp1a	98	69.167	Lepisosteus_oculatus
MGP_SPRETEiJ_G0027446	Lsm10	100	96.774	ENSLAFG00000009600	LSM10	98	95.000	Loxodonta_africana
MGP_SPRETEiJ_G0027446	Lsm10	100	91.398	ENSMFAG00000009115	LSM10	98	92.500	Macaca_fascicularis
MGP_SPRETEiJ_G0027446	Lsm10	100	91.398	ENSMMUG00000017338	LSM10	98	92.500	Macaca_mulatta
MGP_SPRETEiJ_G0027446	Lsm10	100	91.398	ENSMNEG00000020023	LSM10	98	92.500	Macaca_nemestrina
MGP_SPRETEiJ_G0027446	Lsm10	100	91.398	ENSMLEG00000025150	LSM10	98	92.500	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0027446	Lsm10	100	67.742	ENSMAMG00000004427	oscp1a	98	64.167	Mastacembelus_armatus
MGP_SPRETEiJ_G0027446	Lsm10	96	67.416	ENSMZEG00005026307	oscp1a	94	67.241	Maylandia_zebra
MGP_SPRETEiJ_G0027446	Lsm10	100	74.194	ENSMGAG00000015707	LSM10	98	72.727	Meleagris_gallopavo
MGP_SPRETEiJ_G0027446	Lsm10	99	95.041	ENSMAUG00000016624	Lsm10	99	95.041	Mesocricetus_auratus
MGP_SPRETEiJ_G0027446	Lsm10	99	95.868	ENSMOCG00000021943	Lsm10	99	95.868	Microtus_ochrogaster
MGP_SPRETEiJ_G0027446	Lsm10	95	69.318	ENSMMOG00000013597	oscp1a	88	66.102	Mola_mola
MGP_SPRETEiJ_G0027446	Lsm10	100	84.946	ENSMODG00000023328	LSM10	98	82.645	Monodelphis_domestica
MGP_SPRETEiJ_G0027446	Lsm10	74	58.108	ENSMALG00000012661	oscp1a	58	58.108	Monopterus_albus
MGP_SPRETEiJ_G0027446	Lsm10	100	99.180	MGP_CAROLIEiJ_G0026467	Lsm10	100	99.180	Mus_caroli
MGP_SPRETEiJ_G0027446	Lsm10	100	100.000	ENSMUSG00000050188	Lsm10	100	100.000	Mus_musculus
MGP_SPRETEiJ_G0027446	Lsm10	100	100.000	MGP_PahariEiJ_G0028798	Lsm10	100	100.000	Mus_pahari
MGP_SPRETEiJ_G0027446	Lsm10	100	95.699	ENSMPUG00000018593	LSM10	98	94.215	Mustela_putorius_furo
MGP_SPRETEiJ_G0027446	Lsm10	100	89.247	ENSMLUG00000023895	LSM10	98	88.430	Myotis_lucifugus
MGP_SPRETEiJ_G0027446	Lsm10	100	96.774	ENSNGAG00000015011	Lsm10	98	95.868	Nannospalax_galili
MGP_SPRETEiJ_G0027446	Lsm10	96	68.539	ENSNBRG00000014306	oscp1a	94	68.103	Neolamprologus_brichardi
MGP_SPRETEiJ_G0027446	Lsm10	100	91.398	ENSNLEG00000033754	LSM10	98	92.500	Nomascus_leucogenys
MGP_SPRETEiJ_G0027446	Lsm10	100	84.946	ENSMEUG00000006313	LSM10	98	82.645	Notamacropus_eugenii
MGP_SPRETEiJ_G0027446	Lsm10	100	92.473	ENSOPRG00000001699	LSM10	98	90.909	Ochotona_princeps
MGP_SPRETEiJ_G0027446	Lsm10	100	93.548	ENSODEG00000019161	LSM10	98	91.736	Octodon_degus
MGP_SPRETEiJ_G0027446	Lsm10	96	68.539	ENSONIG00000020904	oscp1a	95	68.103	Oreochromis_niloticus
MGP_SPRETEiJ_G0027446	Lsm10	100	80.645	ENSOANG00000002066	LSM10	99	77.049	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0027446	Lsm10	100	90.323	ENSOCUG00000005333	LSM10	98	89.256	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0027446	Lsm10	96	68.539	ENSORLG00000009504	oscp1a	98	65.254	Oryzias_latipes
MGP_SPRETEiJ_G0027446	Lsm10	96	68.539	ENSORLG00020016201	oscp1a	98	65.254	Oryzias_latipes_hni
MGP_SPRETEiJ_G0027446	Lsm10	96	67.416	ENSORLG00015007794	oscp1a	97	63.559	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0027446	Lsm10	100	94.624	ENSOGAG00000002653	LSM10	98	91.736	Otolemur_garnettii
MGP_SPRETEiJ_G0027446	Lsm10	100	92.473	ENSOARG00000009596	LSM10	98	90.833	Ovis_aries
MGP_SPRETEiJ_G0027446	Lsm10	100	90.323	ENSPPAG00000023465	LSM10	98	90.833	Pan_paniscus
MGP_SPRETEiJ_G0027446	Lsm10	100	94.624	ENSPPRG00000014619	LSM10	98	94.215	Panthera_pardus
MGP_SPRETEiJ_G0027446	Lsm10	100	94.624	ENSPTIG00000004613	LSM10	98	94.215	Panthera_tigris_altaica
MGP_SPRETEiJ_G0027446	Lsm10	100	90.323	ENSPTRG00000000539	LSM10	98	90.833	Pan_troglodytes
MGP_SPRETEiJ_G0027446	Lsm10	100	91.398	ENSPANG00000023172	LSM10	98	92.500	Papio_anubis
MGP_SPRETEiJ_G0027446	Lsm10	100	67.742	ENSPKIG00000003728	oscp1a	98	64.754	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0027446	Lsm10	100	78.495	ENSPSIG00000000590	LSM10	98	73.554	Pelodiscus_sinensis
MGP_SPRETEiJ_G0027446	Lsm10	82	63.158	ENSPMGG00000015718	oscp1a	99	63.158	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0027446	Lsm10	100	83.871	ENSPCIG00000014865	LSM10	76	84.466	Phascolarctos_cinereus
MGP_SPRETEiJ_G0027446	Lsm10	95	69.318	ENSPFOG00000020490	oscp1a	95	67.857	Poecilia_formosa
MGP_SPRETEiJ_G0027446	Lsm10	95	69.318	ENSPLAG00000016537	oscp1a	85	67.857	Poecilia_latipinna
MGP_SPRETEiJ_G0027446	Lsm10	90	70.238	ENSPMEG00000000174	oscp1a	94	68.519	Poecilia_mexicana
MGP_SPRETEiJ_G0027446	Lsm10	95	68.182	ENSPREG00000009899	oscp1a	85	66.964	Poecilia_reticulata
MGP_SPRETEiJ_G0027446	Lsm10	100	90.323	ENSPPYG00000001539	LSM10	98	91.667	Pongo_abelii
MGP_SPRETEiJ_G0027446	Lsm10	100	94.624	ENSPCAG00000002520	LSM10	97	92.373	Procavia_capensis
MGP_SPRETEiJ_G0027446	Lsm10	100	90.323	ENSPVAG00000008644	LSM10	98	89.256	Pteropus_vampyrus
MGP_SPRETEiJ_G0027446	Lsm10	96	67.416	ENSPNYG00000003138	oscp1a	94	67.241	Pundamilia_nyererei
MGP_SPRETEiJ_G0027446	Lsm10	96	68.539	ENSPNAG00000028829	oscp1a	98	64.407	Pygocentrus_nattereri
MGP_SPRETEiJ_G0027446	Lsm10	100	99.180	ENSRNOG00000025716	Lsm10	100	99.180	Rattus_norvegicus
MGP_SPRETEiJ_G0027446	Lsm10	100	91.398	ENSRBIG00000001561	LSM10	98	92.500	Rhinopithecus_bieti
MGP_SPRETEiJ_G0027446	Lsm10	100	91.398	ENSRROG00000011414	LSM10	98	92.500	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0027446	Lsm10	100	90.323	ENSSBOG00000036413	-	98	91.667	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0027446	Lsm10	100	84.946	ENSSHAG00000018056	LSM10	98	82.645	Sarcophilus_harrisii
MGP_SPRETEiJ_G0027446	Lsm10	100	67.742	ENSSFOG00015019954	lsm10	100	64.754	Scleropages_formosus
MGP_SPRETEiJ_G0027446	Lsm10	95	68.182	ENSSMAG00000001297	oscp1a	98	66.087	Scophthalmus_maximus
MGP_SPRETEiJ_G0027446	Lsm10	96	67.416	ENSSDUG00000007090	oscp1a	94	64.655	Seriola_dumerili
MGP_SPRETEiJ_G0027446	Lsm10	96	68.539	ENSSLDG00000000800	oscp1a	96	65.517	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0027446	Lsm10	100	94.624	ENSSARG00000004211	LSM10	98	91.057	Sorex_araneus
MGP_SPRETEiJ_G0027446	Lsm10	97	68.889	ENSSPAG00000009229	oscp1a	96	66.379	Stegastes_partitus
MGP_SPRETEiJ_G0027446	Lsm10	100	93.548	ENSSSCG00000038916	LSM10	98	90.833	Sus_scrofa
MGP_SPRETEiJ_G0027446	Lsm10	100	72.043	ENSTGUG00000001600	-	99	71.074	Taeniopygia_guttata
MGP_SPRETEiJ_G0027446	Lsm10	100	72.043	ENSTGUG00000001602	-	99	71.074	Taeniopygia_guttata
MGP_SPRETEiJ_G0027446	Lsm10	95	71.591	ENSTRUG00000010531	oscp1a	94	67.241	Takifugu_rubripes
MGP_SPRETEiJ_G0027446	Lsm10	100	92.473	ENSTBEG00000016674	LSM10	98	94.167	Tupaia_belangeri
MGP_SPRETEiJ_G0027446	Lsm10	100	93.548	ENSUAMG00000020265	LSM10	98	91.736	Ursus_americanus
MGP_SPRETEiJ_G0027446	Lsm10	100	93.548	ENSUMAG00000001438	LSM10	56	91.736	Ursus_maritimus
MGP_SPRETEiJ_G0027446	Lsm10	100	95.699	ENSVVUG00000023209	LSM10	98	94.215	Vulpes_vulpes
MGP_SPRETEiJ_G0027446	Lsm10	100	75.269	ENSXETG00000027631	lsm10	99	69.672	Xenopus_tropicalis
MGP_SPRETEiJ_G0027446	Lsm10	95	65.909	ENSXCOG00000018776	oscp1a	74	64.103	Xiphophorus_couchianus
MGP_SPRETEiJ_G0027446	Lsm10	100	63.542	ENSXMAG00000019963	oscp1a	96	63.333	Xiphophorus_maculatus