EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0027850 (Gene tree)
Gene ID: -
Gene Symbol: Chd5
Alias: 4930532L22Rik|B230399N07Rik
Full Name: chromodomain helicase DNA binding protein 5
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 58354 bases
Position: chr4:148795206-148853559
Accession: 3036258
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0068674	ResIII	PF04851.15	2.4e-07	1	1
MGP_SPRETEiJ_P0068676	ResIII	PF04851.15	2.5e-07	1	1
MGP_SPRETEiJ_P0068675	ResIII	PF04851.15	2.5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0068678	-	6259	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0068674	-	9379	-	MGP_SPRETEiJ_P0068674	1912 (aa)	-	-
MGP_SPRETEiJ_T0068675	-	9490	-	MGP_SPRETEiJ_P0068675	1949 (aa)	-	-
MGP_SPRETEiJ_T0068676	-	9126	-	MGP_SPRETEiJ_P0068676	1943 (aa)	-	-
MGP_SPRETEiJ_T0068677	-	280	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0027850's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0027850's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0027850	Chd5	93	72.652	MGP_SPRETEiJ_G0029911	Chd4	96	72.515
MGP_SPRETEiJ_G0027850	Chd5	97	70.211	MGP_SPRETEiJ_G0017400	Chd3	95	71.053
MGP_SPRETEiJ_G0027850	Chd5	51	34.657	MGP_SPRETEiJ_G0025526	Chd6	66	36.621

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0027850	Chd5	100	94.371	ENSG00000116254	CHD5	100	94.371	Homo_sapiens
MGP_SPRETEiJ_G0027850	Chd5	99	93.773	ENSAMEG00000009880	CHD5	99	93.763	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0027850	Chd5	94	78.942	ENSACIG00000012582	chd5	98	79.054	Amphilophus_citrinellus
MGP_SPRETEiJ_G0027850	Chd5	95	79.861	ENSAOCG00000020356	chd5	93	79.118	Amphiprion_ocellaris
MGP_SPRETEiJ_G0027850	Chd5	94	81.539	ENSAPLG00000015475	CHD5	98	81.627	Anas_platyrhynchos
MGP_SPRETEiJ_G0027850	Chd5	99	82.974	ENSACAG00000002441	CHD5	96	83.854	Anolis_carolinensis
MGP_SPRETEiJ_G0027850	Chd5	87	94.973	ENSANAG00000001078	CHD5	91	94.973	Aotus_nancymaae
MGP_SPRETEiJ_G0027850	Chd5	95	75.649	ENSACLG00000003012	chd5	96	75.734	Astatotilapia_calliptera
MGP_SPRETEiJ_G0027850	Chd5	84	85.714	ENSAMXG00000008921	chd5	94	85.200	Astyanax_mexicanus
MGP_SPRETEiJ_G0027850	Chd5	93	95.710	ENSBTAG00000040477	CHD5	100	95.710	Bos_taurus
MGP_SPRETEiJ_G0027850	Chd5	100	94.268	ENSCJAG00000000101	CHD5	100	94.268	Callithrix_jacchus
MGP_SPRETEiJ_G0027850	Chd5	93	95.597	ENSCAFG00000019545	CHD5	100	95.597	Canis_familiaris
MGP_SPRETEiJ_G0027850	Chd5	99	94.830	ENSCAFG00020008689	CHD5	97	94.830	Canis_lupus_dingo
MGP_SPRETEiJ_G0027850	Chd5	99	93.849	ENSCHIG00000015027	CHD5	97	93.849	Capra_hircus
MGP_SPRETEiJ_G0027850	Chd5	98	89.685	ENSTSYG00000033991	CHD5	99	90.201	Carlito_syrichta
MGP_SPRETEiJ_G0027850	Chd5	99	94.762	ENSCAPG00000009294	CHD5	99	94.756	Cavia_aperea
MGP_SPRETEiJ_G0027850	Chd5	99	94.762	ENSCPOG00000025080	CHD5	99	94.756	Cavia_porcellus
MGP_SPRETEiJ_G0027850	Chd5	100	94.422	ENSCCAG00000024756	CHD5	100	94.422	Cebus_capucinus
MGP_SPRETEiJ_G0027850	Chd5	100	93.808	ENSCATG00000043011	CHD5	100	93.808	Cercocebus_atys
MGP_SPRETEiJ_G0027850	Chd5	99	95.132	ENSCLAG00000010589	CHD5	99	95.127	Chinchilla_lanigera
MGP_SPRETEiJ_G0027850	Chd5	100	94.729	ENSCSAG00000000733	CHD5	100	94.729	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0027850	Chd5	93	89.468	ENSCPBG00000019363	CHD5	100	89.358	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0027850	Chd5	99	94.712	ENSCANG00000032302	CHD5	99	94.701	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0027850	Chd5	55	98.396	ENSCGRG00001011042	Chd5	100	98.396	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0027850	Chd5	99	97.508	ENSCGRG00000011341	Chd5	100	97.508	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0027850	Chd5	94	67.725	ENSDARG00000025789	chd4b	96	68.338	Danio_rerio
MGP_SPRETEiJ_G0027850	Chd5	96	78.886	ENSDARG00000105083	chd5	97	80.261	Danio_rerio
MGP_SPRETEiJ_G0027850	Chd5	100	90.332	ENSDNOG00000046342	CHD5	100	90.020	Dasypus_novemcinctus
MGP_SPRETEiJ_G0027850	Chd5	99	94.820	ENSDORG00000005923	Chd5	99	94.815	Dipodomys_ordii
MGP_SPRETEiJ_G0027850	Chd5	99	93.234	ENSEASG00005021464	CHD5	97	95.984	Equus_asinus_asinus
MGP_SPRETEiJ_G0027850	Chd5	99	92.757	ENSECAG00000025043	CHD5	98	97.581	Equus_caballus
MGP_SPRETEiJ_G0027850	Chd5	77	99.535	ENSEEUG00000002772	CHD5	77	99.535	Erinaceus_europaeus
MGP_SPRETEiJ_G0027850	Chd5	95	78.854	ENSELUG00000010742	chd5	90	90.783	Esox_lucius
MGP_SPRETEiJ_G0027850	Chd5	100	94.217	ENSFCAG00000006319	CHD5	100	94.217	Felis_catus
MGP_SPRETEiJ_G0027850	Chd5	99	87.868	ENSFALG00000009740	CHD5	99	87.280	Ficedula_albicollis
MGP_SPRETEiJ_G0027850	Chd5	99	94.361	ENSFDAG00000012881	CHD5	96	94.266	Fukomys_damarensis
MGP_SPRETEiJ_G0027850	Chd5	100	86.888	ENSGALG00000000747	CHD5	100	86.429	Gallus_gallus
MGP_SPRETEiJ_G0027850	Chd5	57	82.797	ENSGACG00000004389	chd5	93	82.981	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0027850	Chd5	96	87.393	ENSGAGG00000001590	CHD5	99	95.122	Gopherus_agassizii
MGP_SPRETEiJ_G0027850	Chd5	99	94.395	ENSGGOG00000000708	CHD5	99	94.390	Gorilla_gorilla
MGP_SPRETEiJ_G0027850	Chd5	96	75.974	ENSHBUG00000013453	chd5	96	76.545	Haplochromis_burtoni
MGP_SPRETEiJ_G0027850	Chd5	100	94.679	ENSHGLG00000018184	CHD5	100	94.679	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0027850	Chd5	99	88.232	ENSHGLG00100013261	CHD5	98	87.292	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0027850	Chd5	94	79.350	ENSIPUG00000005446	chd5	98	79.900	Ictalurus_punctatus
MGP_SPRETEiJ_G0027850	Chd5	99	94.921	ENSSTOG00000002778	CHD5	99	95.498	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0027850	Chd5	100	95.668	ENSJJAG00000019072	Chd5	100	95.616	Jaculus_jaculus
MGP_SPRETEiJ_G0027850	Chd5	96	82.599	ENSLOCG00000004944	chd5	95	81.562	Lepisosteus_oculatus
MGP_SPRETEiJ_G0027850	Chd5	99	95.016	ENSLAFG00000006348	CHD5	99	95.008	Loxodonta_africana
MGP_SPRETEiJ_G0027850	Chd5	99	94.508	ENSMFAG00000033993	CHD5	100	95.322	Macaca_fascicularis
MGP_SPRETEiJ_G0027850	Chd5	99	94.606	ENSMMUG00000016838	CHD5	99	94.597	Macaca_mulatta
MGP_SPRETEiJ_G0027850	Chd5	100	94.678	ENSMNEG00000040044	CHD5	100	94.678	Macaca_nemestrina
MGP_SPRETEiJ_G0027850	Chd5	99	91.295	ENSMLEG00000039166	CHD5	99	91.287	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0027850	Chd5	95	75.916	ENSMZEG00005000841	chd5	96	75.234	Maylandia_zebra
MGP_SPRETEiJ_G0027850	Chd5	99	87.148	ENSMGAG00000001055	CHD5	99	86.994	Meleagris_gallopavo
MGP_SPRETEiJ_G0027850	Chd5	100	91.231	ENSMICG00000017862	CHD5	100	91.128	Microcebus_murinus
MGP_SPRETEiJ_G0027850	Chd5	100	97.646	ENSMOCG00000011049	Chd5	100	97.646	Microtus_ochrogaster
MGP_SPRETEiJ_G0027850	Chd5	86	79.814	ENSMODG00000006294	CHD5	78	93.649	Monodelphis_domestica
MGP_SPRETEiJ_G0027850	Chd5	95	78.995	ENSMALG00000002831	chd5	99	77.237	Monopterus_albus
MGP_SPRETEiJ_G0027850	Chd5	100	99.692	MGP_CAROLIEiJ_G0026857	Chd5	100	99.692	Mus_caroli
MGP_SPRETEiJ_G0027850	Chd5	100	99.693	ENSMUSG00000005045	Chd5	100	99.693	Mus_musculus
MGP_SPRETEiJ_G0027850	Chd5	100	99.268	MGP_PahariEiJ_G0029205	Chd5	100	99.268	Mus_pahari
MGP_SPRETEiJ_G0027850	Chd5	99	88.487	ENSMPUG00000007122	CHD5	99	88.967	Mustela_putorius_furo
MGP_SPRETEiJ_G0027850	Chd5	99	95.114	ENSNGAG00000019812	Chd5	96	95.154	Nannospalax_galili
MGP_SPRETEiJ_G0027850	Chd5	99	92.073	ENSNLEG00000010320	CHD5	99	91.896	Nomascus_leucogenys
MGP_SPRETEiJ_G0027850	Chd5	86	86.877	ENSOPRG00000004304	CHD5	87	86.877	Ochotona_princeps
MGP_SPRETEiJ_G0027850	Chd5	99	94.442	ENSODEG00000010262	CHD5	99	94.436	Octodon_degus
MGP_SPRETEiJ_G0027850	Chd5	93	78.482	ENSONIG00000000619	chd5	93	78.493	Oreochromis_niloticus
MGP_SPRETEiJ_G0027850	Chd5	96	72.756	ENSOANG00000001819	CHD5	98	72.545	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0027850	Chd5	99	92.320	ENSOGAG00000005703	CHD5	99	92.934	Otolemur_garnettii
MGP_SPRETEiJ_G0027850	Chd5	99	93.053	ENSOARG00000013425	CHD5	99	93.087	Ovis_aries
MGP_SPRETEiJ_G0027850	Chd5	99	94.346	ENSPPAG00000034048	CHD5	99	94.341	Pan_paniscus
MGP_SPRETEiJ_G0027850	Chd5	100	93.705	ENSPPRG00000009453	CHD5	100	93.705	Panthera_pardus
MGP_SPRETEiJ_G0027850	Chd5	99	86.646	ENSPTIG00000013926	CHD5	99	86.810	Panthera_tigris_altaica
MGP_SPRETEiJ_G0027850	Chd5	100	94.322	ENSPTRG00000000075	CHD5	100	94.322	Pan_troglodytes
MGP_SPRETEiJ_G0027850	Chd5	100	94.729	ENSPANG00000006765	CHD5	100	94.729	Papio_anubis
MGP_SPRETEiJ_G0027850	Chd5	95	77.957	ENSPKIG00000004282	chd5	98	78.235	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0027850	Chd5	93	82.465	ENSPSIG00000006414	CHD5	99	82.450	Pelodiscus_sinensis
MGP_SPRETEiJ_G0027850	Chd5	69	97.746	ENSPEMG00000014799	Chd5	100	98.068	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0027850	Chd5	99	91.111	ENSPCIG00000028310	CHD5	100	89.163	Phascolarctos_cinereus
MGP_SPRETEiJ_G0027850	Chd5	95	76.857	ENSPLAG00000005343	chd5	99	76.163	Poecilia_latipinna
MGP_SPRETEiJ_G0027850	Chd5	99	90.852	ENSPPYG00000001952	CHD5	99	91.467	Pongo_abelii
MGP_SPRETEiJ_G0027850	Chd5	100	94.115	ENSPCOG00000022930	CHD5	100	94.729	Propithecus_coquereli
MGP_SPRETEiJ_G0027850	Chd5	94	77.462	ENSPNYG00000003183	chd5	99	77.263	Pundamilia_nyererei
MGP_SPRETEiJ_G0027850	Chd5	100	98.461	ENSRNOG00000011268	Chd5	100	98.461	Rattus_norvegicus
MGP_SPRETEiJ_G0027850	Chd5	94	96.266	ENSRBIG00000032140	CHD5	95	96.266	Rhinopithecus_bieti
MGP_SPRETEiJ_G0027850	Chd5	99	94.707	ENSRROG00000041146	CHD5	99	94.701	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0027850	Chd5	100	88.304	ENSSBOG00000001955	CHD5	100	95.074	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0027850	Chd5	96	85.164	ENSSHAG00000018641	CHD5	99	85.193	Sarcophilus_harrisii
MGP_SPRETEiJ_G0027850	Chd5	97	78.695	ENSSFOG00015006296	chd5	90	92.093	Scleropages_formosus
MGP_SPRETEiJ_G0027850	Chd5	94	78.450	ENSSDUG00000017526	chd5	92	90.367	Seriola_dumerili
MGP_SPRETEiJ_G0027850	Chd5	97	81.240	ENSSPUG00000010622	CHD5	97	81.823	Sphenodon_punctatus
MGP_SPRETEiJ_G0027850	Chd5	100	94.413	ENSSSCG00000003366	CHD5	100	95.597	Sus_scrofa
MGP_SPRETEiJ_G0027850	Chd5	91	84.394	ENSTGUG00000002634	-	100	84.251	Taeniopygia_guttata
MGP_SPRETEiJ_G0027850	Chd5	53	80.509	ENSTNIG00000004346	chd5	99	80.709	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0027850	Chd5	100	93.198	ENSTTRG00000010468	CHD5	100	93.458	Tursiops_truncatus
MGP_SPRETEiJ_G0027850	Chd5	98	94.866	ENSUAMG00000024509	CHD5	97	95.329	Ursus_americanus
MGP_SPRETEiJ_G0027850	Chd5	98	89.674	ENSUMAG00000024173	CHD5	98	90.060	Ursus_maritimus
MGP_SPRETEiJ_G0027850	Chd5	99	92.894	ENSVVUG00000026480	CHD5	94	98.000	Vulpes_vulpes
MGP_SPRETEiJ_G0027850	Chd5	96	80.214	ENSXETG00000002904	chd5	99	79.659	Xenopus_tropicalis
MGP_SPRETEiJ_G0027850	Chd5	59	83.871	ENSXCOG00000014202	chd5	99	83.871	Xiphophorus_couchianus