EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0028113 (Gene tree)
Gene ID: -
Gene Symbol: Slbp
Alias: -
Full Name: stem-loop binding protein
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 17051 bases
Position: chr5:30942820-30959870
Accession: 108402
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0070178	SLBP_RNA_bind	PF15247.6	2.7e-29	1	1
MGP_SPRETEiJ_P0070174	SLBP_RNA_bind	PF15247.6	3.5e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0070181	-	564	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0070180	-	2709	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0070176	-	701	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0070177	-	1127	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0070174	-	1027	-	MGP_SPRETEiJ_P0070174	250 (aa)	-	UPI00005AB7CA
MGP_SPRETEiJ_T0070175	-	1584	-	MGP_SPRETEiJ_P0070175	275 (aa)	-	UPI0000020E1D
MGP_SPRETEiJ_T0070178	-	1180	-	MGP_SPRETEiJ_P0070178	219 (aa)	-	-
MGP_SPRETEiJ_T0070179	-	505	-	MGP_SPRETEiJ_P0070179	33 (aa)	-	UPI0003F486EA

Gene Model

Click here to download MGP_SPRETEiJ_G0028113's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0028113's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0028113	Slbp	100	87.273	ENSG00000163950	SLBP	100	86.545	Homo_sapiens
MGP_SPRETEiJ_G0028113	Slbp	84	59.296	ENSAPOG00000004953	slbp	90	50.973	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0028113	Slbp	79	94.470	ENSAMEG00000016915	SLBP	100	94.470	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0028113	Slbp	85	58.209	ENSACIG00000022308	slbp	94	51.020	Amphilophus_citrinellus
MGP_SPRETEiJ_G0028113	Slbp	84	57.000	ENSAOCG00000024545	slbp	87	49.049	Amphiprion_ocellaris
MGP_SPRETEiJ_G0028113	Slbp	84	57.000	ENSAPEG00000017629	slbp	87	49.049	Amphiprion_percula
MGP_SPRETEiJ_G0028113	Slbp	84	59.500	ENSATEG00000016358	slbp	74	57.820	Anabas_testudineus
MGP_SPRETEiJ_G0028113	Slbp	79	75.455	ENSAPLG00000015989	-	100	79.545	Anas_platyrhynchos
MGP_SPRETEiJ_G0028113	Slbp	100	83.333	ENSANAG00000034769	SLBP	100	82.624	Aotus_nancymaae
MGP_SPRETEiJ_G0028113	Slbp	84	57.868	ENSACLG00000007036	-	78	51.613	Astatotilapia_calliptera
MGP_SPRETEiJ_G0028113	Slbp	84	66.321	ENSAMXG00000014527	slbp	77	63.507	Astyanax_mexicanus
MGP_SPRETEiJ_G0028113	Slbp	100	86.182	ENSBTAG00000001328	SLBP	100	86.182	Bos_taurus
MGP_SPRETEiJ_G0028113	Slbp	100	82.270	ENSCJAG00000001790	SLBP	100	82.270	Callithrix_jacchus
MGP_SPRETEiJ_G0028113	Slbp	100	88.364	ENSCAFG00000015016	SLBP	100	88.364	Canis_familiaris
MGP_SPRETEiJ_G0028113	Slbp	100	88.364	ENSCAFG00020012334	SLBP	100	88.364	Canis_lupus_dingo
MGP_SPRETEiJ_G0028113	Slbp	100	85.455	ENSCHIG00000019364	SLBP	100	85.455	Capra_hircus
MGP_SPRETEiJ_G0028113	Slbp	100	88.000	ENSTSYG00000000376	SLBP	100	86.909	Carlito_syrichta
MGP_SPRETEiJ_G0028113	Slbp	66	91.160	ENSCAPG00000016340	SLBP	100	91.160	Cavia_aperea
MGP_SPRETEiJ_G0028113	Slbp	100	86.738	ENSCPOG00000000031	SLBP	100	86.738	Cavia_porcellus
MGP_SPRETEiJ_G0028113	Slbp	62	84.762	ENSCCAG00000026134	SLBP	85	82.857	Cebus_capucinus
MGP_SPRETEiJ_G0028113	Slbp	100	87.273	ENSCATG00000029173	SLBP	100	86.545	Cercocebus_atys
MGP_SPRETEiJ_G0028113	Slbp	100	86.545	ENSCLAG00000008157	SLBP	100	86.545	Chinchilla_lanigera
MGP_SPRETEiJ_G0028113	Slbp	100	72.857	ENSCSAG00000015628	SLBP	100	72.857	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0028113	Slbp	100	70.213	ENSCPBG00000000746	SLBP	100	72.340	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0028113	Slbp	79	90.278	ENSCANG00000041008	SLBP	100	89.352	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0028113	Slbp	100	92.364	ENSCGRG00001012991	-	100	92.364	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0028113	Slbp	100	95.636	ENSCGRG00001009760	-	100	95.636	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0028113	Slbp	100	95.636	ENSCGRG00000004506	Slbp	100	95.636	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0028113	Slbp	84	60.622	ENSCSEG00000020337	-	78	56.364	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0028113	Slbp	81	58.511	ENSCVAG00000019592	-	76	55.610	Cyprinodon_variegatus
MGP_SPRETEiJ_G0028113	Slbp	89	62.376	ENSDARG00000100558	slbp	68	62.857	Danio_rerio
MGP_SPRETEiJ_G0028113	Slbp	100	78.445	ENSDNOG00000047539	SLBP	100	78.445	Dasypus_novemcinctus
MGP_SPRETEiJ_G0028113	Slbp	79	92.593	ENSDORG00000003028	Slbp	100	92.593	Dipodomys_ordii
MGP_SPRETEiJ_G0028113	Slbp	96	80.751	ENSETEG00000004641	SLBP	99	80.753	Echinops_telfairi
MGP_SPRETEiJ_G0028113	Slbp	70	94.271	ENSEASG00005022714	SLBP	100	94.271	Equus_asinus_asinus
MGP_SPRETEiJ_G0028113	Slbp	99	88.532	ENSECAG00000011689	SLBP	71	88.532	Equus_caballus
MGP_SPRETEiJ_G0028113	Slbp	86	58.209	ENSELUG00000012854	slbp	91	49.412	Esox_lucius
MGP_SPRETEiJ_G0028113	Slbp	100	89.818	ENSFCAG00000000169	SLBP	100	89.818	Felis_catus
MGP_SPRETEiJ_G0028113	Slbp	100	69.395	ENSFALG00000010003	-	100	69.039	Ficedula_albicollis
MGP_SPRETEiJ_G0028113	Slbp	92	90.514	ENSFDAG00000007592	SLBP	99	90.514	Fukomys_damarensis
MGP_SPRETEiJ_G0028113	Slbp	82	58.511	ENSFHEG00000007497	slbp	77	51.442	Fundulus_heteroclitus
MGP_SPRETEiJ_G0028113	Slbp	66	71.333	ENSGMOG00000015352	slbp	96	71.333	Gadus_morhua
MGP_SPRETEiJ_G0028113	Slbp	100	69.039	ENSGALG00000015712	SLBP	100	71.174	Gallus_gallus
MGP_SPRETEiJ_G0028113	Slbp	83	60.847	ENSGAFG00000019577	slbp	80	55.924	Gambusia_affinis
MGP_SPRETEiJ_G0028113	Slbp	84	57.653	ENSGACG00000019596	slbp	82	56.158	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0028113	Slbp	96	68.981	ENSGAGG00000012096	SLBP	91	72.687	Gopherus_agassizii
MGP_SPRETEiJ_G0028113	Slbp	100	87.273	ENSGGOG00000003167	SLBP	100	86.545	Gorilla_gorilla
MGP_SPRETEiJ_G0028113	Slbp	84	57.000	ENSHBUG00000003338	-	78	51.613	Haplochromis_burtoni
MGP_SPRETEiJ_G0028113	Slbp	90	79.032	ENSHGLG00000008313	-	100	74.909	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0028113	Slbp	100	77.091	ENSHGLG00000005955	-	100	77.091	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0028113	Slbp	85	80.769	ENSHGLG00000010461	-	96	80.972	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0028113	Slbp	100	88.727	ENSHGLG00100014018	-	100	88.727	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0028113	Slbp	90	79.839	ENSHGLG00100010510	-	100	75.636	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0028113	Slbp	85	80.769	ENSHGLG00100014906	-	96	80.972	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0028113	Slbp	86	58.163	ENSHCOG00000013425	slbp	90	50.403	Hippocampus_comes
MGP_SPRETEiJ_G0028113	Slbp	84	67.368	ENSIPUG00000016780	slbp	74	67.172	Ictalurus_punctatus
MGP_SPRETEiJ_G0028113	Slbp	100	92.000	ENSSTOG00000003262	SLBP	100	92.000	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0028113	Slbp	100	90.909	ENSJJAG00000002394	-	100	90.909	Jaculus_jaculus
MGP_SPRETEiJ_G0028113	Slbp	100	92.000	ENSJJAG00000020549	-	100	92.000	Jaculus_jaculus
MGP_SPRETEiJ_G0028113	Slbp	83	58.031	ENSKMAG00000008187	slbp	77	53.670	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0028113	Slbp	83	60.104	ENSLBEG00000024709	slbp	76	53.333	Labrus_bergylta
MGP_SPRETEiJ_G0028113	Slbp	94	58.447	ENSLACG00000014623	SLBP	97	56.089	Latimeria_chalumnae
MGP_SPRETEiJ_G0028113	Slbp	86	60.199	ENSLOCG00000011027	slbp	93	52.518	Lepisosteus_oculatus
MGP_SPRETEiJ_G0028113	Slbp	95	84.541	ENSLAFG00000012933	SLBP	99	85.837	Loxodonta_africana
MGP_SPRETEiJ_G0028113	Slbp	91	88.048	ENSMFAG00000030130	SLBP	95	74.319	Macaca_fascicularis
MGP_SPRETEiJ_G0028113	Slbp	93	85.496	ENSMMUG00000032303	SLBP	96	89.862	Macaca_mulatta
MGP_SPRETEiJ_G0028113	Slbp	100	68.085	ENSMNEG00000008082	SLBP	100	67.376	Macaca_nemestrina
MGP_SPRETEiJ_G0028113	Slbp	93	80.000	ENSMLEG00000024639	SLBP	98	79.216	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0028113	Slbp	84	54.726	ENSMAMG00000001046	-	90	47.656	Mastacembelus_armatus
MGP_SPRETEiJ_G0028113	Slbp	84	57.000	ENSMZEG00005017261	-	78	51.613	Maylandia_zebra
MGP_SPRETEiJ_G0028113	Slbp	79	76.498	ENSMGAG00000013085	SLBP	100	78.341	Meleagris_gallopavo
MGP_SPRETEiJ_G0028113	Slbp	100	95.636	ENSMAUG00000009490	Slbp	100	95.636	Mesocricetus_auratus
MGP_SPRETEiJ_G0028113	Slbp	100	86.909	ENSMICG00000014244	SLBP	100	85.818	Microcebus_murinus
MGP_SPRETEiJ_G0028113	Slbp	100	95.273	ENSMOCG00000015826	Slbp	100	96.262	Microtus_ochrogaster
MGP_SPRETEiJ_G0028113	Slbp	89	56.281	ENSMMOG00000010181	slbp	93	50.424	Mola_mola
MGP_SPRETEiJ_G0028113	Slbp	93	81.226	ENSMODG00000004304	SLBP	100	81.226	Monodelphis_domestica
MGP_SPRETEiJ_G0028113	Slbp	81	57.732	ENSMALG00000013883	-	56	54.167	Monopterus_albus
MGP_SPRETEiJ_G0028113	Slbp	100	99.636	MGP_CAROLIEiJ_G0027117	Slbp	100	99.636	Mus_caroli
MGP_SPRETEiJ_G0028113	Slbp	100	100.000	ENSMUSG00000004642	Slbp	100	100.000	Mus_musculus
MGP_SPRETEiJ_G0028113	Slbp	100	100.000	MGP_PahariEiJ_G0016901	Slbp	100	100.000	Mus_pahari
MGP_SPRETEiJ_G0028113	Slbp	67	92.391	ENSMPUG00000011139	SLBP	94	92.391	Mustela_putorius_furo
MGP_SPRETEiJ_G0028113	Slbp	79	88.073	ENSMLUG00000004425	SLBP	93	88.073	Myotis_lucifugus
MGP_SPRETEiJ_G0028113	Slbp	100	90.182	ENSNGAG00000020799	Slbp	100	90.182	Nannospalax_galili
MGP_SPRETEiJ_G0028113	Slbp	89	55.502	ENSNBRG00000006044	-	87	52.174	Neolamprologus_brichardi
MGP_SPRETEiJ_G0028113	Slbp	100	85.106	ENSNLEG00000000048	SLBP	100	84.397	Nomascus_leucogenys
MGP_SPRETEiJ_G0028113	Slbp	71	87.640	ENSMEUG00000002501	SLBP	100	87.640	Notamacropus_eugenii
MGP_SPRETEiJ_G0028113	Slbp	100	86.545	ENSODEG00000012641	SLBP	100	86.545	Octodon_degus
MGP_SPRETEiJ_G0028113	Slbp	84	57.000	ENSONIG00000017469	-	78	51.613	Oreochromis_niloticus
MGP_SPRETEiJ_G0028113	Slbp	79	83.410	ENSOANG00000014243	SLBP	95	85.253	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0028113	Slbp	83	59.788	ENSORLG00000024887	-	88	48.739	Oryzias_latipes
MGP_SPRETEiJ_G0028113	Slbp	83	59.259	ENSORLG00020007798	slbp	89	48.319	Oryzias_latipes_hni
MGP_SPRETEiJ_G0028113	Slbp	83	59.259	ENSORLG00015016656	slbp	88	48.319	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0028113	Slbp	89	56.158	ENSOMEG00000010818	slbp	90	48.980	Oryzias_melastigma
MGP_SPRETEiJ_G0028113	Slbp	100	86.909	ENSOGAG00000009750	SLBP	100	86.182	Otolemur_garnettii
MGP_SPRETEiJ_G0028113	Slbp	79	91.244	ENSOARG00000016090	SLBP	100	91.244	Ovis_aries
MGP_SPRETEiJ_G0028113	Slbp	100	86.909	ENSPPAG00000033300	SLBP	100	86.182	Pan_paniscus
MGP_SPRETEiJ_G0028113	Slbp	91	90.400	ENSPPRG00000016897	SLBP	100	90.400	Panthera_pardus
MGP_SPRETEiJ_G0028113	Slbp	70	94.271	ENSPTIG00000015057	SLBP	100	94.271	Panthera_tigris_altaica
MGP_SPRETEiJ_G0028113	Slbp	100	86.545	ENSPTRG00000015832	SLBP	100	85.818	Pan_troglodytes
MGP_SPRETEiJ_G0028113	Slbp	100	83.451	ENSPANG00000004932	SLBP	100	82.746	Papio_anubis
MGP_SPRETEiJ_G0028113	Slbp	86	61.026	ENSPKIG00000006183	slbp	93	52.206	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0028113	Slbp	85	56.410	ENSPMGG00000017684	-	95	57.292	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0028113	Slbp	100	96.000	ENSPEMG00000018369	Slbp	100	96.000	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0028113	Slbp	100	75.593	ENSPCIG00000013575	SLBP	86	75.593	Phascolarctos_cinereus
MGP_SPRETEiJ_G0028113	Slbp	83	60.317	ENSPFOG00000000462	slbp	76	55.924	Poecilia_formosa
MGP_SPRETEiJ_G0028113	Slbp	83	60.317	ENSPLAG00000008300	slbp	81	54.206	Poecilia_latipinna
MGP_SPRETEiJ_G0028113	Slbp	83	60.317	ENSPMEG00000020807	slbp	76	55.924	Poecilia_mexicana
MGP_SPRETEiJ_G0028113	Slbp	83	60.317	ENSPREG00000004561	slbp	76	55.924	Poecilia_reticulata
MGP_SPRETEiJ_G0028113	Slbp	100	87.636	ENSPPYG00000014529	SLBP	100	86.909	Pongo_abelii
MGP_SPRETEiJ_G0028113	Slbp	100	88.364	ENSPCOG00000017399	SLBP	100	87.273	Propithecus_coquereli
MGP_SPRETEiJ_G0028113	Slbp	100	81.455	ENSPVAG00000002807	SLBP	100	81.455	Pteropus_vampyrus
MGP_SPRETEiJ_G0028113	Slbp	84	57.000	ENSPNYG00000005451	-	78	51.613	Pundamilia_nyererei
MGP_SPRETEiJ_G0028113	Slbp	87	64.467	ENSPNAG00000018503	slbp	89	57.917	Pygocentrus_nattereri
MGP_SPRETEiJ_G0028113	Slbp	100	98.909	ENSRNOG00000037162	Slbp	100	98.909	Rattus_norvegicus
MGP_SPRETEiJ_G0028113	Slbp	100	87.273	ENSRBIG00000039159	SLBP	100	86.545	Rhinopithecus_bieti
MGP_SPRETEiJ_G0028113	Slbp	95	86.973	ENSRROG00000030081	SLBP	96	86.207	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0028113	Slbp	70	89.583	ENSSBOG00000033897	SLBP	100	88.542	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0028113	Slbp	100	75.251	ENSSHAG00000013939	SLBP	100	75.251	Sarcophilus_harrisii
MGP_SPRETEiJ_G0028113	Slbp	89	61.650	ENSSFOG00015019429	slbp	96	52.060	Scleropages_formosus
MGP_SPRETEiJ_G0028113	Slbp	86	53.555	ENSSMAG00000016028	-	82	50.213	Scophthalmus_maximus
MGP_SPRETEiJ_G0028113	Slbp	84	59.896	ENSSDUG00000000855	-	77	55.869	Seriola_dumerili
MGP_SPRETEiJ_G0028113	Slbp	91	40.385	ENSSLDG00000007554	-	70	38.428	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0028113	Slbp	63	53.691	ENSSLDG00000022893	-	86	54.795	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0028113	Slbp	96	68.939	ENSSPUG00000016007	SLBP	98	69.615	Sphenodon_punctatus
MGP_SPRETEiJ_G0028113	Slbp	84	59.091	ENSSPAG00000004021	slbp	82	57.477	Stegastes_partitus
MGP_SPRETEiJ_G0028113	Slbp	100	85.455	ENSSSCG00000008676	SLBP	100	85.455	Sus_scrofa
MGP_SPRETEiJ_G0028113	Slbp	93	70.115	ENSTGUG00000010626	-	100	72.031	Taeniopygia_guttata
MGP_SPRETEiJ_G0028113	Slbp	83	60.733	ENSTRUG00000000688	slbp	91	49.402	Takifugu_rubripes
MGP_SPRETEiJ_G0028113	Slbp	83	56.452	ENSTNIG00000000484	-	80	50.246	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0028113	Slbp	92	68.898	ENSTBEG00000004085	SLBP	100	68.898	Tupaia_belangeri
MGP_SPRETEiJ_G0028113	Slbp	79	93.519	ENSTTRG00000010901	-	100	93.519	Tursiops_truncatus
MGP_SPRETEiJ_G0028113	Slbp	71	88.202	ENSTTRG00000004010	-	100	88.202	Tursiops_truncatus
MGP_SPRETEiJ_G0028113	Slbp	100	88.809	ENSUAMG00000012990	SLBP	100	88.809	Ursus_americanus
MGP_SPRETEiJ_G0028113	Slbp	70	93.229	ENSUMAG00000006119	SLBP	100	93.229	Ursus_maritimus
MGP_SPRETEiJ_G0028113	Slbp	100	87.636	ENSVVUG00000015578	-	100	87.636	Vulpes_vulpes
MGP_SPRETEiJ_G0028113	Slbp	89	61.000	ENSXETG00000003876	slbp	93	59.289	Xenopus_tropicalis
MGP_SPRETEiJ_G0028113	Slbp	83	60.209	ENSXCOG00000008275	slbp	81	55.869	Xiphophorus_couchianus
MGP_SPRETEiJ_G0028113	Slbp	83	60.317	ENSXMAG00000001331	-	75	55.924	Xiphophorus_maculatus