EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0028339 (Gene tree)
Gene ID: -
Gene Symbol: Ythdc1
Alias: A730098D12Rik
Full Name: YTH domain containing 1
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 35787 bases
Position: chr5:85786868-85822654
Accession: 2443713
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0071526	YTH	PF04146.15	1.8e-39	1	1
MGP_SPRETEiJ_P0071527	YTH	PF04146.15	1.9e-39	1	1
MGP_SPRETEiJ_P0071530	YTH	PF04146.15	1.9e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0071528	-	4349	-	MGP_SPRETEiJ_P0071528	545 (aa)	-	-
MGP_SPRETEiJ_T0071529	-	2979	-	MGP_SPRETEiJ_P0071529	740 (aa)	-	-
MGP_SPRETEiJ_T0071526	-	3225	-	MGP_SPRETEiJ_P0071526	710 (aa)	-	-
MGP_SPRETEiJ_T0071527	-	3272	-	MGP_SPRETEiJ_P0071527	728 (aa)	-	-
MGP_SPRETEiJ_T0071531	-	3116	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0071530	-	2963	-	MGP_SPRETEiJ_P0071530	736 (aa)	-	-
MGP_SPRETEiJ_T0071533	-	4015	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0071532	-	6320	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0071535	-	1249	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0071534	-	593	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0028339's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0028339's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0028339	Ythdc1	100	97.151	ENSG00000083896	YTHDC1	100	97.151	Homo_sapiens
MGP_SPRETEiJ_G0028339	Ythdc1	57	59.518	ENSAPOG00000013997	ythdc1	93	51.965	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0028339	Ythdc1	93	93.195	ENSAMEG00000005688	YTHDC1	93	93.935	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0028339	Ythdc1	64	70.213	ENSACIG00000019728	ythdc1	82	59.112	Amphilophus_citrinellus
MGP_SPRETEiJ_G0028339	Ythdc1	57	61.239	ENSAOCG00000000239	ythdc1	94	55.163	Amphiprion_ocellaris
MGP_SPRETEiJ_G0028339	Ythdc1	50	64.151	ENSAPEG00000000618	ythdc1	55	67.308	Amphiprion_percula
MGP_SPRETEiJ_G0028339	Ythdc1	91	84.511	ENSAPLG00000009921	YTHDC1	92	85.564	Anas_platyrhynchos
MGP_SPRETEiJ_G0028339	Ythdc1	93	83.704	ENSACAG00000009697	YTHDC1	93	83.704	Anolis_carolinensis
MGP_SPRETEiJ_G0028339	Ythdc1	100	96.982	ENSANAG00000001522	YTHDC1	100	96.982	Aotus_nancymaae
MGP_SPRETEiJ_G0028339	Ythdc1	93	52.703	ENSACLG00000019371	ythdc1	94	54.494	Astatotilapia_calliptera
MGP_SPRETEiJ_G0028339	Ythdc1	93	63.256	ENSAMXG00000006978	ythdc1	92	64.884	Astyanax_mexicanus
MGP_SPRETEiJ_G0028339	Ythdc1	93	93.333	ENSBTAG00000015572	YTHDC1	93	93.481	Bos_taurus
MGP_SPRETEiJ_G0028339	Ythdc1	100	97.394	ENSCJAG00000009934	YTHDC1	100	97.394	Callithrix_jacchus
MGP_SPRETEiJ_G0028339	Ythdc1	93	93.047	ENSCAFG00000002821	YTHDC1	93	93.787	Canis_familiaris
MGP_SPRETEiJ_G0028339	Ythdc1	93	93.047	ENSCAFG00020027112	YTHDC1	93	93.787	Canis_lupus_dingo
MGP_SPRETEiJ_G0028339	Ythdc1	97	88.624	ENSCHIG00000004810	YTHDC1	95	92.979	Capra_hircus
MGP_SPRETEiJ_G0028339	Ythdc1	100	97.257	ENSTSYG00000011668	YTHDC1	100	97.257	Carlito_syrichta
MGP_SPRETEiJ_G0028339	Ythdc1	95	74.081	ENSCAPG00000008722	YTHDC1	90	68.827	Cavia_aperea
MGP_SPRETEiJ_G0028339	Ythdc1	100	90.123	ENSCPOG00000010929	YTHDC1	100	90.123	Cavia_porcellus
MGP_SPRETEiJ_G0028339	Ythdc1	100	97.257	ENSCCAG00000035754	YTHDC1	100	97.257	Cebus_capucinus
MGP_SPRETEiJ_G0028339	Ythdc1	100	97.286	ENSCATG00000036320	YTHDC1	100	97.286	Cercocebus_atys
MGP_SPRETEiJ_G0028339	Ythdc1	99	96.836	ENSCLAG00000005482	YTHDC1	99	96.836	Chinchilla_lanigera
MGP_SPRETEiJ_G0028339	Ythdc1	100	97.257	ENSCSAG00000005252	YTHDC1	100	97.257	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0028339	Ythdc1	92	86.012	ENSCPBG00000021965	YTHDC1	94	86.903	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0028339	Ythdc1	100	97.394	ENSCANG00000004769	YTHDC1	100	97.394	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0028339	Ythdc1	100	98.236	ENSCGRG00001000816	Ythdc1	100	98.236	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0028339	Ythdc1	99	98.194	ENSCGRG00000009807	Ythdc1	100	97.925	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0028339	Ythdc1	93	51.613	ENSCSEG00000020404	ythdc1	94	53.521	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0028339	Ythdc1	57	59.202	ENSCVAG00000022349	ythdc1	94	54.261	Cyprinodon_variegatus
MGP_SPRETEiJ_G0028339	Ythdc1	93	62.682	ENSDARG00000051953	ythdc1	92	63.097	Danio_rerio
MGP_SPRETEiJ_G0028339	Ythdc1	93	93.047	ENSDNOG00000004949	YTHDC1	93	94.379	Dasypus_novemcinctus
MGP_SPRETEiJ_G0028339	Ythdc1	99	97.111	ENSDORG00000013045	Ythdc1	100	97.079	Dipodomys_ordii
MGP_SPRETEiJ_G0028339	Ythdc1	78	100.000	ENSETEG00000001878	YTHDC1	78	100.000	Echinops_telfairi
MGP_SPRETEiJ_G0028339	Ythdc1	100	96.580	ENSEASG00005018383	YTHDC1	100	96.580	Equus_asinus_asinus
MGP_SPRETEiJ_G0028339	Ythdc1	93	93.195	ENSECAG00000018303	YTHDC1	99	92.924	Equus_caballus
MGP_SPRETEiJ_G0028339	Ythdc1	93	92.593	ENSEEUG00000015466	YTHDC1	93	92.889	Erinaceus_europaeus
MGP_SPRETEiJ_G0028339	Ythdc1	96	58.692	ENSELUG00000014029	ythdc1	95	62.689	Esox_lucius
MGP_SPRETEiJ_G0028339	Ythdc1	97	90.943	ENSFCAG00000026791	YTHDC1	93	94.222	Felis_catus
MGP_SPRETEiJ_G0028339	Ythdc1	63	96.939	ENSFALG00000006581	YTHDC1	87	95.025	Ficedula_albicollis
MGP_SPRETEiJ_G0028339	Ythdc1	99	96.106	ENSFDAG00000018560	YTHDC1	100	96.106	Fukomys_damarensis
MGP_SPRETEiJ_G0028339	Ythdc1	63	67.857	ENSFHEG00000001286	ythdc1	60	56.024	Fundulus_heteroclitus
MGP_SPRETEiJ_G0028339	Ythdc1	59	66.946	ENSGMOG00000018815	ythdc1	77	64.706	Gadus_morhua
MGP_SPRETEiJ_G0028339	Ythdc1	92	85.246	ENSGALG00000035906	YTHDC1	85	86.165	Gallus_gallus
MGP_SPRETEiJ_G0028339	Ythdc1	57	62.150	ENSGACG00000015486	ythdc1	58	62.260	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0028339	Ythdc1	93	85.652	ENSGAGG00000007108	YTHDC1	93	85.798	Gopherus_agassizii
MGP_SPRETEiJ_G0028339	Ythdc1	100	97.286	ENSGGOG00000021958	YTHDC1	100	97.286	Gorilla_gorilla
MGP_SPRETEiJ_G0028339	Ythdc1	93	52.896	ENSHBUG00000019288	ythdc1	93	54.494	Haplochromis_burtoni
MGP_SPRETEiJ_G0028339	Ythdc1	100	96.065	ENSHGLG00000006319	-	100	96.065	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0028339	Ythdc1	94	69.825	ENSHGLG00000003239	-	86	72.523	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0028339	Ythdc1	99	95.192	ENSHGLG00100001556	-	100	95.192	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0028339	Ythdc1	94	68.360	ENSHGLG00100008060	-	86	71.001	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0028339	Ythdc1	54	70.213	ENSHCOG00000001520	ythdc1	84	70.213	Hippocampus_comes
MGP_SPRETEiJ_G0028339	Ythdc1	93	67.006	ENSIPUG00000018136	ythdc1	92	66.812	Ictalurus_punctatus
MGP_SPRETEiJ_G0028339	Ythdc1	100	97.286	ENSSTOG00000013652	YTHDC1	100	97.286	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0028339	Ythdc1	91	91.828	ENSJJAG00000010268	Ythdc1	93	92.571	Jaculus_jaculus
MGP_SPRETEiJ_G0028339	Ythdc1	57	60.502	ENSKMAG00000006483	ythdc1	87	64.889	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0028339	Ythdc1	64	63.462	ENSLBEG00000020831	ythdc1	74	75.000	Labrus_bergylta
MGP_SPRETEiJ_G0028339	Ythdc1	87	72.457	ENSLACG00000004893	YTHDC1	92	73.011	Latimeria_chalumnae
MGP_SPRETEiJ_G0028339	Ythdc1	93	72.083	ENSLOCG00000003045	ythdc1	92	67.799	Lepisosteus_oculatus
MGP_SPRETEiJ_G0028339	Ythdc1	100	95.522	ENSLAFG00000021592	YTHDC1	100	95.522	Loxodonta_africana
MGP_SPRETEiJ_G0028339	Ythdc1	100	97.422	ENSMFAG00000031927	YTHDC1	100	97.422	Macaca_fascicularis
MGP_SPRETEiJ_G0028339	Ythdc1	100	97.394	ENSMMUG00000002265	YTHDC1	100	97.394	Macaca_mulatta
MGP_SPRETEiJ_G0028339	Ythdc1	100	97.394	ENSMNEG00000033751	YTHDC1	100	97.394	Macaca_nemestrina
MGP_SPRETEiJ_G0028339	Ythdc1	100	97.257	ENSMLEG00000042147	YTHDC1	100	97.257	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0028339	Ythdc1	55	61.631	ENSMAMG00000013122	ythdc1	60	65.057	Mastacembelus_armatus
MGP_SPRETEiJ_G0028339	Ythdc1	93	52.703	ENSMZEG00005023173	ythdc1	93	54.494	Maylandia_zebra
MGP_SPRETEiJ_G0028339	Ythdc1	93	84.296	ENSMGAG00000010391	YTHDC1	92	86.370	Meleagris_gallopavo
MGP_SPRETEiJ_G0028339	Ythdc1	100	97.965	ENSMAUG00000001286	Ythdc1	100	97.965	Mesocricetus_auratus
MGP_SPRETEiJ_G0028339	Ythdc1	100	97.151	ENSMICG00000034640	YTHDC1	100	97.151	Microcebus_murinus
MGP_SPRETEiJ_G0028339	Ythdc1	100	97.965	ENSMOCG00000020201	Ythdc1	100	97.965	Microtus_ochrogaster
MGP_SPRETEiJ_G0028339	Ythdc1	84	73.507	ENSMODG00000014337	-	95	69.830	Monodelphis_domestica
MGP_SPRETEiJ_G0028339	Ythdc1	96	51.206	ENSMODG00000010076	-	96	51.852	Monodelphis_domestica
MGP_SPRETEiJ_G0028339	Ythdc1	93	87.982	ENSMODG00000020754	-	92	88.593	Monodelphis_domestica
MGP_SPRETEiJ_G0028339	Ythdc1	65	56.695	ENSMODG00000009173	-	88	61.353	Monodelphis_domestica
MGP_SPRETEiJ_G0028339	Ythdc1	50	67.116	ENSMALG00000013412	ythdc1	94	53.822	Monopterus_albus
MGP_SPRETEiJ_G0028339	Ythdc1	100	99.864	MGP_CAROLIEiJ_G0027347	Ythdc1	100	99.864	Mus_caroli
MGP_SPRETEiJ_G0028339	Ythdc1	100	99.817	ENSMUSG00000035851	Ythdc1	100	99.817	Mus_musculus
MGP_SPRETEiJ_G0028339	Ythdc1	100	99.592	MGP_PahariEiJ_G0017126	Ythdc1	100	99.592	Mus_pahari
MGP_SPRETEiJ_G0028339	Ythdc1	93	72.901	ENSMPUG00000001743	YTHDC1	53	98.172	Mustela_putorius_furo
MGP_SPRETEiJ_G0028339	Ythdc1	91	93.684	ENSMLUG00000016300	YTHDC1	92	92.932	Myotis_lucifugus
MGP_SPRETEiJ_G0028339	Ythdc1	77	90.995	ENSNGAG00000024000	Ythdc1	93	95.035	Nannospalax_galili
MGP_SPRETEiJ_G0028339	Ythdc1	60	61.631	ENSNBRG00000007663	ythdc1	73	65.011	Neolamprologus_brichardi
MGP_SPRETEiJ_G0028339	Ythdc1	99	96.429	ENSNLEG00000009202	YTHDC1	99	96.429	Nomascus_leucogenys
MGP_SPRETEiJ_G0028339	Ythdc1	82	81.940	ENSMEUG00000007128	YTHDC1	81	81.940	Notamacropus_eugenii
MGP_SPRETEiJ_G0028339	Ythdc1	75	98.017	ENSOPRG00000008986	YTHDC1	74	98.017	Ochotona_princeps
MGP_SPRETEiJ_G0028339	Ythdc1	100	96.159	ENSODEG00000001715	YTHDC1	100	96.159	Octodon_degus
MGP_SPRETEiJ_G0028339	Ythdc1	93	53.089	ENSONIG00000012651	ythdc1	94	54.775	Oreochromis_niloticus
MGP_SPRETEiJ_G0028339	Ythdc1	88	77.064	ENSOANG00000014398	YTHDC1	55	96.962	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0028339	Ythdc1	93	81.093	ENSOCUG00000015886	YTHDC1	57	95.226	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0028339	Ythdc1	56	60.870	ENSORLG00000030544	ythdc1	62	65.654	Oryzias_latipes
MGP_SPRETEiJ_G0028339	Ythdc1	56	60.145	ENSORLG00020019316	ythdc1	62	65.654	Oryzias_latipes_hni
MGP_SPRETEiJ_G0028339	Ythdc1	56	61.275	ENSOMEG00000000551	ythdc1	94	54.154	Oryzias_melastigma
MGP_SPRETEiJ_G0028339	Ythdc1	100	96.433	ENSOGAG00000003362	YTHDC1	100	96.433	Otolemur_garnettii
MGP_SPRETEiJ_G0028339	Ythdc1	93	93.333	ENSOARG00000008633	YTHDC1	93	93.481	Ovis_aries
MGP_SPRETEiJ_G0028339	Ythdc1	100	97.151	ENSPPAG00000041315	YTHDC1	100	97.151	Pan_paniscus
MGP_SPRETEiJ_G0028339	Ythdc1	97	90.755	ENSPPRG00000011979	YTHDC1	93	94.143	Panthera_pardus
MGP_SPRETEiJ_G0028339	Ythdc1	93	92.323	ENSPTIG00000015527	YTHDC1	93	93.759	Panthera_tigris_altaica
MGP_SPRETEiJ_G0028339	Ythdc1	100	97.151	ENSPTRG00000016105	YTHDC1	100	97.151	Pan_troglodytes
MGP_SPRETEiJ_G0028339	Ythdc1	100	97.286	ENSPANG00000021590	YTHDC1	100	97.286	Papio_anubis
MGP_SPRETEiJ_G0028339	Ythdc1	93	68.268	ENSPKIG00000018497	ythdc1	93	68.070	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0028339	Ythdc1	91	85.736	ENSPSIG00000002782	YTHDC1	92	85.886	Pelodiscus_sinensis
MGP_SPRETEiJ_G0028339	Ythdc1	55	56.364	ENSPMGG00000000970	-	74	63.087	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0028339	Ythdc1	99	98.470	ENSPEMG00000013850	Ythdc1	100	98.470	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0028339	Ythdc1	93	87.834	ENSPCIG00000006870	YTHDC1	92	88.444	Phascolarctos_cinereus
MGP_SPRETEiJ_G0028339	Ythdc1	57	59.318	ENSPLAG00000011079	ythdc1	87	64.789	Poecilia_latipinna
MGP_SPRETEiJ_G0028339	Ythdc1	71	58.894	ENSPREG00000016973	ythdc1	61	59.314	Poecilia_reticulata
MGP_SPRETEiJ_G0028339	Ythdc1	87	97.156	ENSPPYG00000014726	YTHDC1	100	97.156	Pongo_abelii
MGP_SPRETEiJ_G0028339	Ythdc1	77	98.810	ENSPCAG00000009607	YTHDC1	77	88.636	Procavia_capensis
MGP_SPRETEiJ_G0028339	Ythdc1	100	92.402	ENSPCOG00000019105	YTHDC1	100	92.402	Propithecus_coquereli
MGP_SPRETEiJ_G0028339	Ythdc1	93	91.433	ENSPVAG00000015551	YTHDC1	93	91.876	Pteropus_vampyrus
MGP_SPRETEiJ_G0028339	Ythdc1	93	52.703	ENSPNYG00000011687	ythdc1	94	54.494	Pundamilia_nyererei
MGP_SPRETEiJ_G0028339	Ythdc1	93	68.696	ENSPNAG00000028365	ythdc1	93	68.931	Pygocentrus_nattereri
MGP_SPRETEiJ_G0028339	Ythdc1	100	98.374	ENSRNOG00000001996	Ythdc1	100	98.374	Rattus_norvegicus
MGP_SPRETEiJ_G0028339	Ythdc1	99	95.055	ENSRBIG00000028279	YTHDC1	99	95.055	Rhinopithecus_bieti
MGP_SPRETEiJ_G0028339	Ythdc1	100	97.394	ENSRROG00000035028	YTHDC1	100	97.394	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0028339	Ythdc1	100	97.422	ENSSBOG00000022353	YTHDC1	100	97.422	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0028339	Ythdc1	93	86.795	ENSSHAG00000002538	YTHDC1	91	88.449	Sarcophilus_harrisii
MGP_SPRETEiJ_G0028339	Ythdc1	93	68.017	ENSSFOG00015003298	ythdc1	93	67.391	Scleropages_formosus
MGP_SPRETEiJ_G0028339	Ythdc1	56	60.090	ENSSMAG00000009086	ythdc1	94	54.085	Scophthalmus_maximus
MGP_SPRETEiJ_G0028339	Ythdc1	55	60.775	ENSSDUG00000022008	ythdc1	94	57.143	Seriola_dumerili
MGP_SPRETEiJ_G0028339	Ythdc1	55	60.775	ENSSLDG00000007926	ythdc1	94	56.802	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0028339	Ythdc1	72	93.499	ENSSARG00000010960	YTHDC1	91	94.455	Sorex_araneus
MGP_SPRETEiJ_G0028339	Ythdc1	93	82.153	ENSSPUG00000009357	YTHDC1	94	83.384	Sphenodon_punctatus
MGP_SPRETEiJ_G0028339	Ythdc1	57	62.156	ENSSPAG00000011449	ythdc1	94	55.091	Stegastes_partitus
MGP_SPRETEiJ_G0028339	Ythdc1	97	89.681	ENSSSCG00000035505	YTHDC1	93	94.169	Sus_scrofa
MGP_SPRETEiJ_G0028339	Ythdc1	93	85.333	ENSTGUG00000004452	-	92	85.778	Taeniopygia_guttata
MGP_SPRETEiJ_G0028339	Ythdc1	90	47.316	ENSTRUG00000010142	ythdc1	72	70.000	Takifugu_rubripes
MGP_SPRETEiJ_G0028339	Ythdc1	91	61.513	ENSTNIG00000013243	ythdc1	89	65.581	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0028339	Ythdc1	93	85.778	ENSTBEG00000011546	YTHDC1	92	87.407	Tupaia_belangeri
MGP_SPRETEiJ_G0028339	Ythdc1	93	92.456	ENSTTRG00000005083	YTHDC1	93	93.195	Tursiops_truncatus
MGP_SPRETEiJ_G0028339	Ythdc1	86	93.750	ENSUAMG00000010388	YTHDC1	92	93.750	Ursus_americanus
MGP_SPRETEiJ_G0028339	Ythdc1	99	82.639	ENSUMAG00000013668	YTHDC1	98	82.639	Ursus_maritimus
MGP_SPRETEiJ_G0028339	Ythdc1	97	90.943	ENSVPAG00000009040	YTHDC1	92	93.455	Vicugna_pacos
MGP_SPRETEiJ_G0028339	Ythdc1	91	93.185	ENSVVUG00000005387	YTHDC1	92	93.600	Vulpes_vulpes
MGP_SPRETEiJ_G0028339	Ythdc1	92	73.997	ENSXETG00000017960	ythdc1	91	73.739	Xenopus_tropicalis
MGP_SPRETEiJ_G0028339	Ythdc1	69	52.899	ENSXCOG00000000530	ythdc1	94	53.497	Xiphophorus_couchianus