EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0028495 (Gene tree)
Gene ID: -
Gene Symbol: Hfm1
Alias: A330009G12Rik|LOC381663|Mer3|Sec63d1
Full Name: HFM1%2C ATP-dependent DNA helicase homolog
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 93111 bases
Position: chr5:105102477-105195587
Accession: 3036246
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0072162	ResIII	PF04851.15	2e-11	1	1
MGP_SPRETEiJ_P0072163	ResIII	PF04851.15	2e-11	1	1
MGP_SPRETEiJ_P0072168	ResIII	PF04851.15	3.3e-08	1	1
MGP_SPRETEiJ_P0072162	DEAD	PF00270.29	7.6e-25	1	1
MGP_SPRETEiJ_P0072163	DEAD	PF00270.29	7.6e-25	1	1
MGP_SPRETEiJ_P0072168	DEAD	PF00270.29	2.1e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0072168	-	1381	-	MGP_SPRETEiJ_P0072168	410 (aa)	-	-
MGP_SPRETEiJ_T0072163	-	5018	-	MGP_SPRETEiJ_P0072163	1434 (aa)	-	-
MGP_SPRETEiJ_T0072162	-	4872	-	MGP_SPRETEiJ_P0072162	1434 (aa)	-	-
MGP_SPRETEiJ_T0072161	-	2613	-	MGP_SPRETEiJ_P0072161	49 (aa)	-	-
MGP_SPRETEiJ_T0072167	-	1324	-	MGP_SPRETEiJ_P0072167	23 (aa)	-	-
MGP_SPRETEiJ_T0072166	-	1581	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0072165	-	1928	-	MGP_SPRETEiJ_P0072165	625 (aa)	-	-
MGP_SPRETEiJ_T0072164	-	4278	-	MGP_SPRETEiJ_P0072164	1425 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0028495's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0028495's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0028495	Hfm1	55	38.415	MGP_SPRETEiJ_G0025170	Snrnp200	76	35.061
MGP_SPRETEiJ_G0028495	Hfm1	53	35.725	MGP_SPRETEiJ_G0016111	Ascc3	63	35.725

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0028495	Hfm1	100	76.426	ENSG00000162669	HFM1	100	76.426	Homo_sapiens
MGP_SPRETEiJ_G0028495	Hfm1	58	65.150	ENSAPOG00000005304	hfm1	94	65.150	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0028495	Hfm1	100	75.886	ENSAMEG00000000432	HFM1	100	75.886	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0028495	Hfm1	71	58.681	ENSACIG00000021553	hfm1	91	58.681	Amphilophus_citrinellus
MGP_SPRETEiJ_G0028495	Hfm1	58	65.306	ENSAOCG00000022839	hfm1	96	67.929	Amphiprion_ocellaris
MGP_SPRETEiJ_G0028495	Hfm1	55	68.228	ENSAPEG00000014316	hfm1	96	68.228	Amphiprion_percula
MGP_SPRETEiJ_G0028495	Hfm1	67	63.223	ENSATEG00000019181	hfm1	93	55.335	Anabas_testudineus
MGP_SPRETEiJ_G0028495	Hfm1	100	57.798	ENSAPLG00000013639	HFM1	100	57.798	Anas_platyrhynchos
MGP_SPRETEiJ_G0028495	Hfm1	100	74.792	ENSANAG00000029513	HFM1	100	74.792	Aotus_nancymaae
MGP_SPRETEiJ_G0028495	Hfm1	70	58.777	ENSACLG00000009033	hfm1	97	63.766	Astatotilapia_calliptera
MGP_SPRETEiJ_G0028495	Hfm1	85	54.661	ENSAMXG00000006108	hfm1	93	50.730	Astyanax_mexicanus
MGP_SPRETEiJ_G0028495	Hfm1	100	74.583	ENSBTAG00000020856	HFM1	100	74.583	Bos_taurus
MGP_SPRETEiJ_G0028495	Hfm1	100	75.313	ENSCJAG00000001843	HFM1	100	75.313	Callithrix_jacchus
MGP_SPRETEiJ_G0028495	Hfm1	100	75.330	ENSCAFG00000020187	HFM1	100	75.330	Canis_familiaris
MGP_SPRETEiJ_G0028495	Hfm1	100	69.324	ENSCAFG00020013595	-	100	70.149	Canis_lupus_dingo
MGP_SPRETEiJ_G0028495	Hfm1	99	62.103	ENSCHIG00000018623	-	95	64.130	Capra_hircus
MGP_SPRETEiJ_G0028495	Hfm1	100	75.833	ENSTSYG00000014250	HFM1	100	75.833	Carlito_syrichta
MGP_SPRETEiJ_G0028495	Hfm1	99	73.519	ENSCPOG00000007421	HFM1	99	73.519	Cavia_porcellus
MGP_SPRETEiJ_G0028495	Hfm1	100	75.313	ENSCCAG00000033206	HFM1	100	75.313	Cebus_capucinus
MGP_SPRETEiJ_G0028495	Hfm1	100	76.356	ENSCATG00000030987	HFM1	100	76.356	Cercocebus_atys
MGP_SPRETEiJ_G0028495	Hfm1	100	73.716	ENSCLAG00000005173	HFM1	99	73.716	Chinchilla_lanigera
MGP_SPRETEiJ_G0028495	Hfm1	68	89.474	ENSCHOG00000011824	-	76	89.474	Choloepus_hoffmanni
MGP_SPRETEiJ_G0028495	Hfm1	100	72.881	ENSCANG00000034052	-	99	73.134	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0028495	Hfm1	100	80.679	ENSCGRG00001016995	Hfm1	100	80.679	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0028495	Hfm1	100	85.237	ENSCGRG00000017181	Hfm1	100	85.237	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0028495	Hfm1	71	58.541	ENSCSEG00000017659	hfm1	94	58.071	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0028495	Hfm1	50	67.697	ENSCVAG00000005075	hfm1	86	67.697	Cyprinodon_variegatus
MGP_SPRETEiJ_G0028495	Hfm1	100	36.235	ENSDARG00000104288	hfm1	98	53.737	Danio_rerio
MGP_SPRETEiJ_G0028495	Hfm1	100	71.024	ENSDNOG00000004776	HFM1	100	71.024	Dasypus_novemcinctus
MGP_SPRETEiJ_G0028495	Hfm1	100	73.315	ENSDORG00000014661	Hfm1	100	73.315	Dipodomys_ordii
MGP_SPRETEiJ_G0028495	Hfm1	100	69.807	ENSEASG00005015424	HFM1	98	80.019	Equus_asinus_asinus
MGP_SPRETEiJ_G0028495	Hfm1	100	74.613	ENSECAG00000024039	HFM1	100	74.613	Equus_caballus
MGP_SPRETEiJ_G0028495	Hfm1	63	65.308	ENSELUG00000018944	hfm1	97	65.308	Esox_lucius
MGP_SPRETEiJ_G0028495	Hfm1	100	76.528	ENSFCAG00000029116	HFM1	100	76.528	Felis_catus
MGP_SPRETEiJ_G0028495	Hfm1	100	57.541	ENSFALG00000001781	HFM1	100	57.787	Ficedula_albicollis
MGP_SPRETEiJ_G0028495	Hfm1	100	72.966	ENSFDAG00000020816	HFM1	100	72.966	Fukomys_damarensis
MGP_SPRETEiJ_G0028495	Hfm1	66	59.708	ENSGMOG00000017436	hfm1	99	59.708	Gadus_morhua
MGP_SPRETEiJ_G0028495	Hfm1	71	60.271	ENSGAFG00000018093	hfm1	93	65.186	Gambusia_affinis
MGP_SPRETEiJ_G0028495	Hfm1	66	60.762	ENSGACG00000015686	hfm1	100	60.762	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0028495	Hfm1	100	76.356	ENSGGOG00000038524	HFM1	100	76.356	Gorilla_gorilla
MGP_SPRETEiJ_G0028495	Hfm1	70	59.763	ENSHBUG00000007309	hfm1	95	59.630	Haplochromis_burtoni
MGP_SPRETEiJ_G0028495	Hfm1	100	70.803	ENSHGLG00000007780	-	100	72.163	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0028495	Hfm1	100	69.231	ENSHGLG00100019217	-	100	70.763	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0028495	Hfm1	57	62.945	ENSHCOG00000019632	hfm1	97	62.945	Hippocampus_comes
MGP_SPRETEiJ_G0028495	Hfm1	66	64.233	ENSIPUG00000017020	hfm1	92	65.243	Ictalurus_punctatus
MGP_SPRETEiJ_G0028495	Hfm1	100	71.046	ENSSTOG00000008477	-	100	71.520	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0028495	Hfm1	100	75.070	ENSJJAG00000017198	Hfm1	100	77.045	Jaculus_jaculus
MGP_SPRETEiJ_G0028495	Hfm1	62	61.154	ENSKMAG00000002282	hfm1	91	61.154	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0028495	Hfm1	71	58.065	ENSLBEG00000006759	hfm1	96	63.962	Labrus_bergylta
MGP_SPRETEiJ_G0028495	Hfm1	69	65.800	ENSLACG00000010698	HFM1	100	63.594	Latimeria_chalumnae
MGP_SPRETEiJ_G0028495	Hfm1	73	62.654	ENSLOCG00000004931	hfm1	97	62.749	Lepisosteus_oculatus
MGP_SPRETEiJ_G0028495	Hfm1	52	83.984	ENSLAFG00000015903	-	99	83.984	Loxodonta_africana
MGP_SPRETEiJ_G0028495	Hfm1	100	74.012	ENSMFAG00000003649	HFM1	100	74.012	Macaca_fascicularis
MGP_SPRETEiJ_G0028495	Hfm1	100	76.287	ENSMMUG00000006819	HFM1	100	76.287	Macaca_mulatta
MGP_SPRETEiJ_G0028495	Hfm1	100	72.397	ENSMNEG00000039833	-	99	72.708	Macaca_nemestrina
MGP_SPRETEiJ_G0028495	Hfm1	100	73.366	ENSMLEG00000027571	-	99	73.561	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0028495	Hfm1	55	68.381	ENSMAMG00000004623	hfm1	97	65.417	Mastacembelus_armatus
MGP_SPRETEiJ_G0028495	Hfm1	70	58.777	ENSMZEG00005004679	hfm1	97	63.766	Maylandia_zebra
MGP_SPRETEiJ_G0028495	Hfm1	100	48.000	ENSMGAG00000008437	HFM1	97	76.373	Meleagris_gallopavo
MGP_SPRETEiJ_G0028495	Hfm1	100	84.482	ENSMAUG00000018858	Hfm1	100	84.482	Mesocricetus_auratus
MGP_SPRETEiJ_G0028495	Hfm1	100	76.650	ENSMICG00000037935	HFM1	100	76.650	Microcebus_murinus
MGP_SPRETEiJ_G0028495	Hfm1	100	82.160	ENSMOCG00000014812	Hfm1	100	82.160	Microtus_ochrogaster
MGP_SPRETEiJ_G0028495	Hfm1	62	62.626	ENSMMOG00000006148	hfm1	96	63.531	Mola_mola
MGP_SPRETEiJ_G0028495	Hfm1	70	59.446	ENSMALG00000002401	hfm1	96	64.061	Monopterus_albus
MGP_SPRETEiJ_G0028495	Hfm1	95	95.844	MGP_CAROLIEiJ_G0027496	Hfm1	100	95.844	Mus_caroli
MGP_SPRETEiJ_G0028495	Hfm1	100	98.466	ENSMUSG00000043410	Hfm1	100	98.466	Mus_musculus
MGP_SPRETEiJ_G0028495	Hfm1	100	94.212	MGP_PahariEiJ_G0017268	Hfm1	100	94.212	Mus_pahari
MGP_SPRETEiJ_G0028495	Hfm1	100	72.727	ENSMPUG00000004594	HFM1	100	72.727	Mustela_putorius_furo
MGP_SPRETEiJ_G0028495	Hfm1	100	73.786	ENSMLUG00000010200	HFM1	100	73.786	Myotis_lucifugus
MGP_SPRETEiJ_G0028495	Hfm1	70	56.024	ENSNBRG00000002910	hfm1	97	63.956	Neolamprologus_brichardi
MGP_SPRETEiJ_G0028495	Hfm1	100	73.181	ENSNLEG00000010285	HFM1	100	73.181	Nomascus_leucogenys
MGP_SPRETEiJ_G0028495	Hfm1	100	50.121	ENSMEUG00000015788	HFM1	84	64.553	Notamacropus_eugenii
MGP_SPRETEiJ_G0028495	Hfm1	84	72.464	ENSOPRG00000013916	HFM1	84	72.464	Ochotona_princeps
MGP_SPRETEiJ_G0028495	Hfm1	100	69.830	ENSODEG00000006243	-	100	70.878	Octodon_degus
MGP_SPRETEiJ_G0028495	Hfm1	71	60.811	ENSONIG00000010590	hfm1	99	60.687	Oreochromis_niloticus
MGP_SPRETEiJ_G0028495	Hfm1	94	64.175	ENSOCUG00000010974	-	95	64.175	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0028495	Hfm1	57	64.409	ENSORLG00000026844	hfm1	99	64.409	Oryzias_latipes
MGP_SPRETEiJ_G0028495	Hfm1	68	55.544	ENSORLG00020002951	hfm1	96	48.455	Oryzias_latipes_hni
MGP_SPRETEiJ_G0028495	Hfm1	72	58.020	ENSOMEG00000016474	hfm1	99	46.071	Oryzias_melastigma
MGP_SPRETEiJ_G0028495	Hfm1	100	70.944	ENSOGAG00000032369	HFM1	100	78.356	Otolemur_garnettii
MGP_SPRETEiJ_G0028495	Hfm1	100	74.879	ENSOARG00000015812	HFM1	100	74.879	Ovis_aries
MGP_SPRETEiJ_G0028495	Hfm1	100	73.608	ENSPPAG00000024582	HFM1	100	78.824	Pan_paniscus
MGP_SPRETEiJ_G0028495	Hfm1	100	76.667	ENSPPRG00000003270	HFM1	100	76.667	Panthera_pardus
MGP_SPRETEiJ_G0028495	Hfm1	100	76.528	ENSPTIG00000018881	HFM1	100	76.528	Panthera_tigris_altaica
MGP_SPRETEiJ_G0028495	Hfm1	100	76.495	ENSPTRG00000000948	HFM1	100	76.495	Pan_troglodytes
MGP_SPRETEiJ_G0028495	Hfm1	100	76.217	ENSPANG00000009838	HFM1	100	76.217	Papio_anubis
MGP_SPRETEiJ_G0028495	Hfm1	62	65.917	ENSPKIG00000003810	hfm1	95	66.586	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0028495	Hfm1	58	64.770	ENSPMGG00000011059	hfm1	100	64.770	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0028495	Hfm1	100	86.620	ENSPEMG00000022852	Hfm1	100	86.620	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0028495	Hfm1	100	63.758	ENSPCIG00000014233	HFM1	100	63.758	Phascolarctos_cinereus
MGP_SPRETEiJ_G0028495	Hfm1	70	60.361	ENSPFOG00000017194	hfm1	99	61.223	Poecilia_formosa
MGP_SPRETEiJ_G0028495	Hfm1	71	61.569	ENSPLAG00000000571	hfm1	92	61.569	Poecilia_latipinna
MGP_SPRETEiJ_G0028495	Hfm1	72	61.095	ENSPMEG00000019475	hfm1	94	61.095	Poecilia_mexicana
MGP_SPRETEiJ_G0028495	Hfm1	71	61.220	ENSPREG00000007803	hfm1	94	64.115	Poecilia_reticulata
MGP_SPRETEiJ_G0028495	Hfm1	100	76.147	ENSPPYG00000001163	HFM1	100	76.147	Pongo_abelii
MGP_SPRETEiJ_G0028495	Hfm1	67	81.538	ENSPCAG00000004289	-	67	81.538	Procavia_capensis
MGP_SPRETEiJ_G0028495	Hfm1	99	58.191	ENSPCOG00000026252	-	100	59.275	Propithecus_coquereli
MGP_SPRETEiJ_G0028495	Hfm1	100	68.264	ENSPVAG00000009713	HFM1	100	68.264	Pteropus_vampyrus
MGP_SPRETEiJ_G0028495	Hfm1	70	58.679	ENSPNYG00000001795	hfm1	97	63.766	Pundamilia_nyererei
MGP_SPRETEiJ_G0028495	Hfm1	60	65.661	ENSPNAG00000010865	hfm1	85	65.661	Pygocentrus_nattereri
MGP_SPRETEiJ_G0028495	Hfm1	100	88.215	ENSRNOG00000023299	Hfm1	100	88.215	Rattus_norvegicus
MGP_SPRETEiJ_G0028495	Hfm1	100	72.397	ENSRBIG00000033899	-	99	72.495	Rhinopithecus_bieti
MGP_SPRETEiJ_G0028495	Hfm1	100	76.147	ENSRROG00000045569	HFM1	100	76.147	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0028495	Hfm1	100	73.853	ENSSBOG00000027456	HFM1	100	73.853	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0028495	Hfm1	99	54.087	ENSSHAG00000014616	-	98	67.630	Sarcophilus_harrisii
MGP_SPRETEiJ_G0028495	Hfm1	100	42.518	ENSSFOG00015020129	hfm1	100	47.238	Scleropages_formosus
MGP_SPRETEiJ_G0028495	Hfm1	62	64.469	ENSSMAG00000006907	hfm1	87	64.469	Scophthalmus_maximus
MGP_SPRETEiJ_G0028495	Hfm1	58	66.102	ENSSDUG00000011424	hfm1	93	66.102	Seriola_dumerili
MGP_SPRETEiJ_G0028495	Hfm1	58	66.224	ENSSLDG00000016386	hfm1	92	66.224	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0028495	Hfm1	94	58.462	ENSSARG00000009598	-	99	58.462	Sorex_araneus
MGP_SPRETEiJ_G0028495	Hfm1	74	89.362	ENSSPUG00000003380	-	89	84.772	Sphenodon_punctatus
MGP_SPRETEiJ_G0028495	Hfm1	69	57.560	ENSSPAG00000001023	hfm1	94	65.426	Stegastes_partitus
MGP_SPRETEiJ_G0028495	Hfm1	100	72.256	ENSSSCG00000006912	HFM1	99	74.203	Sus_scrofa
MGP_SPRETEiJ_G0028495	Hfm1	66	73.772	ENSTGUG00000006172	HFM1	100	73.772	Taeniopygia_guttata
MGP_SPRETEiJ_G0028495	Hfm1	94	66.753	ENSTBEG00000017533	-	99	66.753	Tupaia_belangeri
MGP_SPRETEiJ_G0028495	Hfm1	100	73.018	ENSTTRG00000013933	HFM1	100	73.018	Tursiops_truncatus
MGP_SPRETEiJ_G0028495	Hfm1	100	59.277	ENSUAMG00000008754	-	99	63.609	Ursus_americanus
MGP_SPRETEiJ_G0028495	Hfm1	100	68.841	ENSUMAG00000001345	-	100	69.787	Ursus_maritimus
MGP_SPRETEiJ_G0028495	Hfm1	93	76.235	ENSVPAG00000011331	HFM1	93	76.235	Vicugna_pacos
MGP_SPRETEiJ_G0028495	Hfm1	100	68.357	ENSVVUG00000020760	HFM1	99	77.703	Vulpes_vulpes
MGP_SPRETEiJ_G0028495	Hfm1	58	65.659	ENSXMAG00000004178	hfm1	92	65.659	Xiphophorus_maculatus