EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0028507 (Gene tree)
Gene ID: -
Gene Symbol: Gfi1
Alias: Gfi-1|Pal-1|Pal1
Full Name: growth factor independent 1 transcription repressor
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 10092 bases
Position: chr5:106035586-106045677
Accession: 103170
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0072217	zf-C2H2	PF00096.26	5e-28	1	6
MGP_SPRETEiJ_P0072217	zf-C2H2	PF00096.26	5e-28	2	6
MGP_SPRETEiJ_P0072217	zf-C2H2	PF00096.26	5e-28	3	6
MGP_SPRETEiJ_P0072217	zf-C2H2	PF00096.26	5e-28	4	6
MGP_SPRETEiJ_P0072217	zf-C2H2	PF00096.26	5e-28	5	6
MGP_SPRETEiJ_P0072217	zf-C2H2	PF00096.26	5e-28	6	6
MGP_SPRETEiJ_P0072216	zf-C2H2	PF00096.26	1.5e-27	1	6
MGP_SPRETEiJ_P0072216	zf-C2H2	PF00096.26	1.5e-27	2	6
MGP_SPRETEiJ_P0072216	zf-C2H2	PF00096.26	1.5e-27	3	6
MGP_SPRETEiJ_P0072216	zf-C2H2	PF00096.26	1.5e-27	4	6
MGP_SPRETEiJ_P0072216	zf-C2H2	PF00096.26	1.5e-27	5	6
MGP_SPRETEiJ_P0072216	zf-C2H2	PF00096.26	1.5e-27	6	6
MGP_SPRETEiJ_P0072217	zf-met	PF12874.7	2.5e-07	1	1
MGP_SPRETEiJ_P0072216	zf-met	PF12874.7	4.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0072218	-	689	-	MGP_SPRETEiJ_P0072218	186 (aa)	-	-
MGP_SPRETEiJ_T0072217	-	1272	-	MGP_SPRETEiJ_P0072217	423 (aa)	-	-
MGP_SPRETEiJ_T0072216	-	2639	-	MGP_SPRETEiJ_P0072216	489 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0028507's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0028507's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0028507	Gfi1	93	43.210	MGP_SPRETEiJ_G0030713	Zfp715	63	43.210
MGP_SPRETEiJ_G0028507	Gfi1	57	48.447	MGP_SPRETEiJ_G0019560	Zfp748	92	48.447

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0028507	Gfi1	100	87.234	ENSG00000162676	GFI1	100	87.234	Homo_sapiens
MGP_SPRETEiJ_G0028507	Gfi1	100	62.383	ENSAPOG00000015189	gfi1ab	100	62.383	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0028507	Gfi1	100	63.059	ENSACIG00000016354	gfi1ab	100	62.005	Amphilophus_citrinellus
MGP_SPRETEiJ_G0028507	Gfi1	100	54.098	ENSAOCG00000008339	gfi1ab	100	54.333	Amphiprion_ocellaris
MGP_SPRETEiJ_G0028507	Gfi1	100	63.084	ENSAPEG00000023870	gfi1ab	100	63.318	Amphiprion_percula
MGP_SPRETEiJ_G0028507	Gfi1	100	59.434	ENSATEG00000009167	gfi1ab	91	56.148	Anabas_testudineus
MGP_SPRETEiJ_G0028507	Gfi1	88	72.386	ENSAPLG00000015700	GFI1	100	72.386	Anas_platyrhynchos
MGP_SPRETEiJ_G0028507	Gfi1	100	69.746	ENSACAG00000004498	GFI1	100	69.515	Anolis_carolinensis
MGP_SPRETEiJ_G0028507	Gfi1	100	85.106	ENSANAG00000019656	GFI1	100	85.106	Aotus_nancymaae
MGP_SPRETEiJ_G0028507	Gfi1	100	63.551	ENSACLG00000026458	gfi1ab	93	62.383	Astatotilapia_calliptera
MGP_SPRETEiJ_G0028507	Gfi1	100	57.569	ENSAMXG00000039600	gfi1ab	100	57.110	Astyanax_mexicanus
MGP_SPRETEiJ_G0028507	Gfi1	100	86.525	ENSBTAG00000016723	GFI1	100	86.525	Bos_taurus
MGP_SPRETEiJ_G0028507	Gfi1	100	84.634	ENSCJAG00000017609	GFI1	100	84.634	Callithrix_jacchus
MGP_SPRETEiJ_G0028507	Gfi1	100	86.998	ENSCAFG00000020155	GFI1	100	86.998	Canis_familiaris
MGP_SPRETEiJ_G0028507	Gfi1	100	86.998	ENSCAFG00020013371	GFI1	98	80.992	Canis_lupus_dingo
MGP_SPRETEiJ_G0028507	Gfi1	100	86.052	ENSCHIG00000016135	GFI1	100	86.052	Capra_hircus
MGP_SPRETEiJ_G0028507	Gfi1	100	88.652	ENSCPOG00000011727	GFI1	100	87.943	Cavia_porcellus
MGP_SPRETEiJ_G0028507	Gfi1	100	85.343	ENSCCAG00000036072	GFI1	100	85.343	Cebus_capucinus
MGP_SPRETEiJ_G0028507	Gfi1	100	86.761	ENSCATG00000037873	GFI1	100	86.761	Cercocebus_atys
MGP_SPRETEiJ_G0028507	Gfi1	100	84.161	ENSCLAG00000005915	GFI1	100	82.759	Chinchilla_lanigera
MGP_SPRETEiJ_G0028507	Gfi1	86	84.932	ENSCSAG00000001469	GFI1	100	84.932	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0028507	Gfi1	100	86.998	ENSCANG00000034077	GFI1	100	86.998	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0028507	Gfi1	100	92.199	ENSCGRG00001015432	Gfi1	100	92.199	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0028507	Gfi1	100	57.471	ENSCSEG00000017729	GFI1	100	55.909	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0028507	Gfi1	100	59.767	ENSCVAG00000011828	gfi1ab	100	59.112	Cyprinodon_variegatus
MGP_SPRETEiJ_G0028507	Gfi1	100	58.199	ENSCVAG00000004930	GFI1	100	59.441	Cyprinodon_variegatus
MGP_SPRETEiJ_G0028507	Gfi1	100	62.617	ENSDARG00000044457	gfi1ab	100	62.617	Danio_rerio
MGP_SPRETEiJ_G0028507	Gfi1	100	84.198	ENSDNOG00000000782	GFI1	97	85.882	Dasypus_novemcinctus
MGP_SPRETEiJ_G0028507	Gfi1	100	83.529	ENSEBUG00000008075	gfi1ab	57	83.529	Eptatretus_burgeri
MGP_SPRETEiJ_G0028507	Gfi1	100	86.052	ENSEASG00005015509	GFI1	100	80.488	Equus_asinus_asinus
MGP_SPRETEiJ_G0028507	Gfi1	92	78.974	ENSECAG00000006647	GFI1	92	79.487	Equus_caballus
MGP_SPRETEiJ_G0028507	Gfi1	100	79.669	ENSEEUG00000000198	GFI1	100	79.905	Erinaceus_europaeus
MGP_SPRETEiJ_G0028507	Gfi1	100	57.506	ENSELUG00000019033	GFI1	100	57.845	Esox_lucius
MGP_SPRETEiJ_G0028507	Gfi1	100	64.269	ENSELUG00000003015	gfi1ab	99	64.269	Esox_lucius
MGP_SPRETEiJ_G0028507	Gfi1	100	87.470	ENSFCAG00000005914	GFI1	100	87.470	Felis_catus
MGP_SPRETEiJ_G0028507	Gfi1	100	60.941	ENSFHEG00000010997	gfi1ab	100	59.674	Fundulus_heteroclitus
MGP_SPRETEiJ_G0028507	Gfi1	100	57.176	ENSFHEG00000000341	GFI1	100	59.491	Fundulus_heteroclitus
MGP_SPRETEiJ_G0028507	Gfi1	100	61.124	ENSGMOG00000007737	gfi1ab	100	61.124	Gadus_morhua
MGP_SPRETEiJ_G0028507	Gfi1	100	71.462	ENSGALG00000043650	GFI1	100	71.462	Gallus_gallus
MGP_SPRETEiJ_G0028507	Gfi1	100	60.648	ENSGAFG00000016637	gfi1ab	100	59.954	Gambusia_affinis
MGP_SPRETEiJ_G0028507	Gfi1	100	60.325	ENSGAFG00000018063	GFI1	100	60.557	Gambusia_affinis
MGP_SPRETEiJ_G0028507	Gfi1	100	61.882	ENSGACG00000004257	gfi1ab	97	61.882	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0028507	Gfi1	100	87.234	ENSGGOG00000005320	GFI1	100	87.234	Gorilla_gorilla
MGP_SPRETEiJ_G0028507	Gfi1	100	63.146	ENSHBUG00000011969	gfi1ab	100	61.502	Haplochromis_burtoni
MGP_SPRETEiJ_G0028507	Gfi1	100	88.416	ENSHGLG00000008020	GFI1	100	88.416	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0028507	Gfi1	100	88.416	ENSHGLG00100000610	GFI1	100	88.416	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0028507	Gfi1	100	52.784	ENSHCOG00000008590	gfi1ab	100	51.002	Hippocampus_comes
MGP_SPRETEiJ_G0028507	Gfi1	100	56.132	ENSHCOG00000019555	GFI1	100	55.896	Hippocampus_comes
MGP_SPRETEiJ_G0028507	Gfi1	100	58.216	ENSIPUG00000013414	GFI1	100	58.065	Ictalurus_punctatus
MGP_SPRETEiJ_G0028507	Gfi1	100	61.215	ENSIPUG00000010071	gfi1ab	87	60.599	Ictalurus_punctatus
MGP_SPRETEiJ_G0028507	Gfi1	100	86.998	ENSSTOG00000014583	GFI1	100	86.998	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0028507	Gfi1	100	59.953	ENSKMAG00000003810	gfi1ab	100	59.719	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0028507	Gfi1	100	62.998	ENSLBEG00000027776	gfi1ab	100	62.676	Labrus_bergylta
MGP_SPRETEiJ_G0028507	Gfi1	99	74.737	ENSLACG00000017590	-	99	74.737	Latimeria_chalumnae
MGP_SPRETEiJ_G0028507	Gfi1	100	67.991	ENSLACG00000013362	GFI1	99	67.431	Latimeria_chalumnae
MGP_SPRETEiJ_G0028507	Gfi1	100	65.581	ENSLOCG00000004711	gfi1ab	100	64.977	Lepisosteus_oculatus
MGP_SPRETEiJ_G0028507	Gfi1	100	79.905	ENSLAFG00000018346	GFI1	100	80.142	Loxodonta_africana
MGP_SPRETEiJ_G0028507	Gfi1	100	86.761	ENSMFAG00000045801	GFI1	100	86.761	Macaca_fascicularis
MGP_SPRETEiJ_G0028507	Gfi1	100	86.761	ENSMNEG00000036338	GFI1	100	86.761	Macaca_nemestrina
MGP_SPRETEiJ_G0028507	Gfi1	100	86.761	ENSMLEG00000036181	GFI1	100	86.761	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0028507	Gfi1	100	63.146	ENSMAMG00000008125	gfi1ab	100	62.676	Mastacembelus_armatus
MGP_SPRETEiJ_G0028507	Gfi1	100	63.785	ENSMZEG00005009895	gfi1ab	100	62.617	Maylandia_zebra
MGP_SPRETEiJ_G0028507	Gfi1	87	73.784	ENSMGAG00000008187	GFI1	99	73.784	Meleagris_gallopavo
MGP_SPRETEiJ_G0028507	Gfi1	100	87.470	ENSMICG00000047208	GFI1	100	87.470	Microcebus_murinus
MGP_SPRETEiJ_G0028507	Gfi1	100	57.176	ENSMMOG00000005556	gfi1ab	88	91.398	Mola_mola
MGP_SPRETEiJ_G0028507	Gfi1	100	75.744	ENSMODG00000011802	GFI1	100	75.973	Monodelphis_domestica
MGP_SPRETEiJ_G0028507	Gfi1	100	62.028	ENSMALG00000014672	gfi1ab	100	61.557	Monopterus_albus
MGP_SPRETEiJ_G0028507	Gfi1	100	98.818	MGP_CAROLIEiJ_G0027508	Gfi1	100	100.000	Mus_caroli
MGP_SPRETEiJ_G0028507	Gfi1	100	99.054	ENSMUSG00000029275	Gfi1	100	99.054	Mus_musculus
MGP_SPRETEiJ_G0028507	Gfi1	100	97.872	MGP_PahariEiJ_G0017280	Gfi1	100	100.000	Mus_pahari
MGP_SPRETEiJ_G0028507	Gfi1	100	78.487	ENSMPUG00000004178	GFI1	98	79.391	Mustela_putorius_furo
MGP_SPRETEiJ_G0028507	Gfi1	100	83.765	ENSMLUG00000015191	GFI1	98	83.217	Myotis_lucifugus
MGP_SPRETEiJ_G0028507	Gfi1	100	62.069	ENSNBRG00000015774	gfi1ab	100	60.920	Neolamprologus_brichardi
MGP_SPRETEiJ_G0028507	Gfi1	93	85.204	ENSNLEG00000010470	GFI1	97	85.204	Nomascus_leucogenys
MGP_SPRETEiJ_G0028507	Gfi1	100	86.052	ENSOPRG00000001473	GFI1	100	86.052	Ochotona_princeps
MGP_SPRETEiJ_G0028507	Gfi1	100	63.318	ENSONIG00000019246	gfi1ab	100	62.150	Oreochromis_niloticus
MGP_SPRETEiJ_G0028507	Gfi1	87	82.561	ENSOCUG00000023553	GFI1	93	82.834	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0028507	Gfi1	100	59.529	ENSORLG00000013806	gfi1ab	100	60.187	Oryzias_latipes
MGP_SPRETEiJ_G0028507	Gfi1	100	57.710	ENSORLG00000005060	GFI1	100	57.710	Oryzias_latipes
MGP_SPRETEiJ_G0028507	Gfi1	100	53.521	ENSORLG00020002817	GFI1	90	60.856	Oryzias_latipes_hni
MGP_SPRETEiJ_G0028507	Gfi1	100	60.656	ENSORLG00020001602	gfi1ab	100	60.656	Oryzias_latipes_hni
MGP_SPRETEiJ_G0028507	Gfi1	100	58.178	ENSORLG00015006070	GFI1	100	58.178	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0028507	Gfi1	100	58.140	ENSOMEG00000016722	GFI1	100	58.042	Oryzias_melastigma
MGP_SPRETEiJ_G0028507	Gfi1	100	73.005	ENSOGAG00000027913	GFI1	100	75.177	Otolemur_garnettii
MGP_SPRETEiJ_G0028507	Gfi1	98	97.143	ENSOARG00000016329	GFI1	95	69.466	Ovis_aries
MGP_SPRETEiJ_G0028507	Gfi1	100	74.883	ENSPPAG00000042186	GFI1	100	74.232	Pan_paniscus
MGP_SPRETEiJ_G0028507	Gfi1	100	87.470	ENSPPRG00000007521	GFI1	100	87.470	Panthera_pardus
MGP_SPRETEiJ_G0028507	Gfi1	100	87.234	ENSPTRG00000043053	GFI1	100	87.234	Pan_troglodytes
MGP_SPRETEiJ_G0028507	Gfi1	100	86.761	ENSPANG00000016433	GFI1	100	86.761	Papio_anubis
MGP_SPRETEiJ_G0028507	Gfi1	100	65.438	ENSPKIG00000004263	GFI1	100	64.977	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0028507	Gfi1	88	73.727	ENSPSIG00000008734	GFI1	97	72.922	Pelodiscus_sinensis
MGP_SPRETEiJ_G0028507	Gfi1	100	59.624	ENSPMGG00000012546	gfi1ab	100	59.624	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0028507	Gfi1	100	76.512	ENSPCIG00000013728	GFI1	100	76.744	Phascolarctos_cinereus
MGP_SPRETEiJ_G0028507	Gfi1	100	60.471	ENSPFOG00000023214	gfi1ab	100	59.259	Poecilia_formosa
MGP_SPRETEiJ_G0028507	Gfi1	85	76.471	ENSPLAG00000010879	gfi1ab	98	76.471	Poecilia_latipinna
MGP_SPRETEiJ_G0028507	Gfi1	100	59.767	ENSPLAG00000005376	GFI1	97	58.584	Poecilia_latipinna
MGP_SPRETEiJ_G0028507	Gfi1	100	59.441	ENSPMEG00000019299	GFI1	100	60.930	Poecilia_mexicana
MGP_SPRETEiJ_G0028507	Gfi1	100	60.941	ENSPMEG00000013694	gfi1ab	100	59.491	Poecilia_mexicana
MGP_SPRETEiJ_G0028507	Gfi1	100	53.034	ENSPREG00000007997	GFI1	100	54.157	Poecilia_reticulata
MGP_SPRETEiJ_G0028507	Gfi1	100	60.471	ENSPREG00000014097	gfi1ab	100	60.000	Poecilia_reticulata
MGP_SPRETEiJ_G0028507	Gfi1	100	71.596	ENSPCAG00000011020	GFI1	100	72.535	Procavia_capensis
MGP_SPRETEiJ_G0028507	Gfi1	100	86.998	ENSPCOG00000020540	GFI1	100	86.998	Propithecus_coquereli
MGP_SPRETEiJ_G0028507	Gfi1	100	83.215	ENSPVAG00000006928	GFI1	100	83.215	Pteropus_vampyrus
MGP_SPRETEiJ_G0028507	Gfi1	100	63.551	ENSPNYG00000021183	gfi1ab	100	62.383	Pundamilia_nyererei
MGP_SPRETEiJ_G0028507	Gfi1	100	58.352	ENSPNAG00000027258	gfi1ab	100	59.624	Pygocentrus_nattereri
MGP_SPRETEiJ_G0028507	Gfi1	100	55.634	ENSPNAG00000028014	GFI1	100	55.294	Pygocentrus_nattereri
MGP_SPRETEiJ_G0028507	Gfi1	100	96.927	ENSRNOG00000002042	Gfi1	100	96.927	Rattus_norvegicus
MGP_SPRETEiJ_G0028507	Gfi1	100	86.761	ENSRBIG00000036467	GFI1	100	86.761	Rhinopithecus_bieti
MGP_SPRETEiJ_G0028507	Gfi1	100	86.761	ENSRROG00000031687	GFI1	100	86.761	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0028507	Gfi1	100	85.106	ENSSBOG00000031300	GFI1	100	85.106	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0028507	Gfi1	100	65.967	ENSSFOG00015020295	gfi1	100	65.734	Scleropages_formosus
MGP_SPRETEiJ_G0028507	Gfi1	100	61.449	ENSSMAG00000002782	gfi1ab	100	61.449	Scophthalmus_maximus
MGP_SPRETEiJ_G0028507	Gfi1	100	61.412	ENSSDUG00000022410	gfi1ab	100	61.412	Seriola_dumerili
MGP_SPRETEiJ_G0028507	Gfi1	100	61.647	ENSSLDG00000020163	gfi1ab	100	60.235	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0028507	Gfi1	81	81.250	ENSSPAG00000009140	gfi1ab	99	81.250	Stegastes_partitus
MGP_SPRETEiJ_G0028507	Gfi1	100	85.579	ENSSSCG00000006902	GFI1	100	86.052	Sus_scrofa
MGP_SPRETEiJ_G0028507	Gfi1	88	73.046	ENSTGUG00000006060	GFI1	100	73.046	Taeniopygia_guttata
MGP_SPRETEiJ_G0028507	Gfi1	100	59.441	ENSTRUG00000000415	gfi1ab	100	58.974	Takifugu_rubripes
MGP_SPRETEiJ_G0028507	Gfi1	100	60.142	ENSTNIG00000000651	gfi1ab	98	58.275	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0028507	Gfi1	100	85.106	ENSTTRG00000000082	GFI1	100	85.106	Tursiops_truncatus
MGP_SPRETEiJ_G0028507	Gfi1	100	83.452	ENSUAMG00000021124	GFI1	97	81.236	Ursus_americanus
MGP_SPRETEiJ_G0028507	Gfi1	100	66.824	ENSXETG00000023006	gfi1	98	66.824	Xenopus_tropicalis
MGP_SPRETEiJ_G0028507	Gfi1	52	80.734	ENSXCOG00000013213	-	63	80.734	Xiphophorus_couchianus
MGP_SPRETEiJ_G0028507	Gfi1	100	53.209	ENSXMAG00000009274	GFI1	70	53.743	Xiphophorus_maculatus
MGP_SPRETEiJ_G0028507	Gfi1	100	60.465	ENSXMAG00000010523	gfi1ab	100	59.767	Xiphophorus_maculatus