EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
MGP_SPRETEiJ_G0028747 (Gene tree)
Gene ID
-
Gene Symbol
Sbno1
Alias
9330180L10Rik|sno
Full Name
strawberry notch 1
Gene Type
protein_coding
Species
Mus_spretus
Status
putative
Strand
Minus strand
Length
56998 bases
Position
chr5:124057740-124114737
Accession
2384298
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
MGP_SPRETEiJ_P0073563ResIIIPF04851.152.1e-0711
MGP_SPRETEiJ_P0073559ResIIIPF04851.152.3e-0711
MGP_SPRETEiJ_P0073561ResIIIPF04851.152.6e-0711
MGP_SPRETEiJ_P0073552ResIIIPF04851.153.8e-0711
MGP_SPRETEiJ_P0073553ResIIIPF04851.153.8e-0711
MGP_SPRETEiJ_P0073554ResIIIPF04851.153.8e-0711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
MGP_SPRETEiJ_T0073555-1053--- (aa)--
MGP_SPRETEiJ_T0073554-4167-MGP_SPRETEiJ_P00735541389 (aa)--
MGP_SPRETEiJ_T0073557-643--- (aa)--
MGP_SPRETEiJ_T0073556-969--- (aa)--
MGP_SPRETEiJ_T0073568-353-MGP_SPRETEiJ_P007356892 (aa)-UPI000620A984
MGP_SPRETEiJ_T0073569-2036--- (aa)--
MGP_SPRETEiJ_T0073553-10157-MGP_SPRETEiJ_P00735531390 (aa)--
MGP_SPRETEiJ_T0073552-10067-MGP_SPRETEiJ_P00735521390 (aa)--
MGP_SPRETEiJ_T0073564-5249-MGP_SPRETEiJ_P0073564263 (aa)--
MGP_SPRETEiJ_T0073560-595--- (aa)--
MGP_SPRETEiJ_T0073566-772-MGP_SPRETEiJ_P0073566211 (aa)-UPI000620AC26
MGP_SPRETEiJ_T0073567-599-MGP_SPRETEiJ_P0073567133 (aa)-UPI000620AC8F
MGP_SPRETEiJ_T0073559-2410-MGP_SPRETEiJ_P0073559754 (aa)--
MGP_SPRETEiJ_T0073558-1509--- (aa)--
MGP_SPRETEiJ_T0073562-1201--- (aa)--
MGP_SPRETEiJ_T0073561-2508-MGP_SPRETEiJ_P0073561784 (aa)--
MGP_SPRETEiJ_T0073565-1224-MGP_SPRETEiJ_P0073565241 (aa)--
MGP_SPRETEiJ_T0073563-2100-MGP_SPRETEiJ_P0073563663 (aa)-UPI00005B21B6
Gene Model
Click here to download MGP_SPRETEiJ_G0028747's gene model file
Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0028747's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
MGP_SPRETEiJ_G0028747Sbno19568.860MGP_SPRETEiJ_G0016381Sbno27568.254
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
MGP_SPRETEiJ_G0028747Sbno19997.342ENSG00000139697SBNO19997.342Homo_sapiens
MGP_SPRETEiJ_G0028747Sbno19590.789ENSAPOG00000003196sbno19881.142Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0028747Sbno110096.456ENSAMEG00000015151SBNO19997.276Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0028747Sbno19590.789ENSACIG00000008088sbno19974.262Amphilophus_citrinellus
MGP_SPRETEiJ_G0028747Sbno19590.789ENSAOCG00000014859sbno19975.265Amphiprion_ocellaris
MGP_SPRETEiJ_G0028747Sbno19590.789ENSAPEG00000006069sbno19975.265Amphiprion_percula
MGP_SPRETEiJ_G0028747Sbno19589.912ENSATEG00000006667sbno19976.197Anabas_testudineus
MGP_SPRETEiJ_G0028747Sbno19597.368ENSAPLG00000015674SBNO19991.739Anas_platyrhynchos
MGP_SPRETEiJ_G0028747Sbno19596.053ENSACAG00000015441SBNO18886.700Anolis_carolinensis
MGP_SPRETEiJ_G0028747Sbno110097.134ENSANAG00000029958-9998.913Aotus_nancymaae
MGP_SPRETEiJ_G0028747Sbno19590.351ENSACLG00000024913sbno19974.731Astatotilapia_calliptera
MGP_SPRETEiJ_G0028747Sbno19592.105ENSAMXG00000019473sbno19980.413Astyanax_mexicanus
MGP_SPRETEiJ_G0028747Sbno110098.494ENSBTAG00000020505SBNO19997.486Bos_taurus
MGP_SPRETEiJ_G0028747Sbno110097.134ENSCJAG00000016599SBNO19997.126Callithrix_jacchus
MGP_SPRETEiJ_G0028747Sbno110096.696ENSCAFG00000007503SBNO19997.285Canis_familiaris
MGP_SPRETEiJ_G0028747Sbno19998.638ENSCAFG00020015363SBNO19996.739Canis_lupus_dingo
MGP_SPRETEiJ_G0028747Sbno19998.336ENSCHIG00000008382SBNO19998.551Capra_hircus
MGP_SPRETEiJ_G0028747Sbno110098.190ENSTSYG00000012749SBNO19997.557Carlito_syrichta
MGP_SPRETEiJ_G0028747Sbno19598.684ENSCAPG00000000384SBNO19999.094Cavia_aperea
MGP_SPRETEiJ_G0028747Sbno19997.277ENSCPOG00000008109SBNO19999.094Cavia_porcellus
MGP_SPRETEiJ_G0028747Sbno110097.285ENSCCAG00000035316SBNO19992.462Cebus_capucinus
MGP_SPRETEiJ_G0028747Sbno19599.561ENSCATG00000008239SBNO19899.457Cercocebus_atys
MGP_SPRETEiJ_G0028747Sbno19997.428ENSCLAG00000008995SBNO19999.457Chinchilla_lanigera
MGP_SPRETEiJ_G0028747Sbno19599.561ENSCSAG00000002064SBNO19998.271Chlorocebus_sabaeus
MGP_SPRETEiJ_G0028747Sbno19599.561ENSCHOG00000008814SBNO19693.744Choloepus_hoffmanni
MGP_SPRETEiJ_G0028747Sbno110092.459ENSCPBG00000025968SBNO19991.733Chrysemys_picta_bellii
MGP_SPRETEiJ_G0028747Sbno19993.976ENSCANG00000042688-9991.750Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0028747Sbno110098.728ENSCGRG00001017470Sbno19998.732Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0028747Sbno110098.728ENSCGRG00000004756Sbno19998.732Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0028747Sbno19590.351ENSCSEG00000011919sbno19975.617Cynoglossus_semilaevis
MGP_SPRETEiJ_G0028747Sbno19591.228ENSCVAG00000007038sbno19975.736Cyprinodon_variegatus
MGP_SPRETEiJ_G0028747Sbno19593.421ENSDARG00000099080sbno19980.315Danio_rerio
MGP_SPRETEiJ_G0028747Sbno19599.561ENSDNOG00000017147SBNO19897.225Dasypus_novemcinctus
MGP_SPRETEiJ_G0028747Sbno19984.003ENSDORG00000015261Sbno19984.003Dipodomys_ordii
MGP_SPRETEiJ_G0028747Sbno19599.561ENSETEG00000005620SBNO19390.566Echinops_telfairi
MGP_SPRETEiJ_G0028747Sbno19585.965ENSEBUG00000013823sbno19361.588Eptatretus_burgeri
MGP_SPRETEiJ_G0028747Sbno110098.795ENSEASG00005012595-9298.516Equus_asinus_asinus
MGP_SPRETEiJ_G0028747Sbno110097.459ENSECAG00000006127SBNO19997.924Equus_caballus
MGP_SPRETEiJ_G0028747Sbno18398.352ENSEEUG00000003793SBNO18398.352Erinaceus_europaeus
MGP_SPRETEiJ_G0028747Sbno19590.789ENSELUG00000002886sbno19977.958Esox_lucius
MGP_SPRETEiJ_G0028747Sbno110097.703ENSFCAG00000015331SBNO110097.703Felis_catus
MGP_SPRETEiJ_G0028747Sbno19596.930ENSFALG00000009273SBNO19991.667Ficedula_albicollis
MGP_SPRETEiJ_G0028747Sbno19997.277ENSFDAG00000014232SBNO19995.109Fukomys_damarensis
MGP_SPRETEiJ_G0028747Sbno19590.789ENSFHEG00000007360sbno19975.545Fundulus_heteroclitus
MGP_SPRETEiJ_G0028747Sbno19590.789ENSGMOG00000018229sbno19978.550Gadus_morhua
MGP_SPRETEiJ_G0028747Sbno19597.368ENSGALG00000003392SBNO19991.870Gallus_gallus
MGP_SPRETEiJ_G0028747Sbno19591.228ENSGAFG00000003960sbno19975.420Gambusia_affinis
MGP_SPRETEiJ_G0028747Sbno19590.351ENSGACG00000015633sbno19978.871Gasterosteus_aculeatus
MGP_SPRETEiJ_G0028747Sbno19795.009ENSGAGG00000001065SBNO19991.091Gopherus_agassizii
MGP_SPRETEiJ_G0028747Sbno110097.134ENSGGOG00000015000SBNO19999.457Gorilla_gorilla
MGP_SPRETEiJ_G0028747Sbno19589.912ENSHBUG00000011910sbno19969.121Haplochromis_burtoni
MGP_SPRETEiJ_G0028747Sbno19996.624ENSHGLG00000014165-9999.094Heterocephalus_glaber_female
MGP_SPRETEiJ_G0028747Sbno19589.474ENSHCOG00000003246sbno19584.783Hippocampus_comes
MGP_SPRETEiJ_G0028747Sbno19590.789ENSIPUG00000015830Sbno19878.887Ictalurus_punctatus
MGP_SPRETEiJ_G0028747Sbno110098.190ENSSTOG00000023221SBNO19999.275Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0028747Sbno19998.341ENSJJAG00000001741Sbno19997.414Jaculus_jaculus
MGP_SPRETEiJ_G0028747Sbno19591.228ENSKMAG00000009696sbno19975.299Kryptolebias_marmoratus
MGP_SPRETEiJ_G0028747Sbno19591.228ENSLBEG00000007623sbno19976.512Labrus_bergylta
MGP_SPRETEiJ_G0028747Sbno19495.595ENSLACG00000017227SBNO19983.468Latimeria_chalumnae
MGP_SPRETEiJ_G0028747Sbno19592.544ENSLOCG00000005725sbno19781.851Lepisosteus_oculatus
MGP_SPRETEiJ_G0028747Sbno19996.695ENSLAFG00000002135SBNO19996.695Loxodonta_africana
MGP_SPRETEiJ_G0028747Sbno110097.134ENSMFAG00000031429SBNO19997.270Macaca_fascicularis
MGP_SPRETEiJ_G0028747Sbno110097.134ENSMMUG00000011496SBNO19997.270Macaca_mulatta
MGP_SPRETEiJ_G0028747Sbno19995.618ENSMLEG00000033260SBNO19999.457Mandrillus_leucophaeus
MGP_SPRETEiJ_G0028747Sbno19590.789ENSMAMG00000005473sbno19975.811Mastacembelus_armatus
MGP_SPRETEiJ_G0028747Sbno19597.368ENSMGAG00000003274SBNO19991.804Meleagris_gallopavo
MGP_SPRETEiJ_G0028747Sbno110099.548ENSMAUG00000004834-10099.548Mesocricetus_auratus
MGP_SPRETEiJ_G0028747Sbno110098.190ENSMICG00000006573-9996.480Microcebus_murinus
MGP_SPRETEiJ_G0028747Sbno19999.394ENSMOCG00000009390Sbno19994.253Microtus_ochrogaster
MGP_SPRETEiJ_G0028747Sbno19490.749ENSMMOG00000008691sbno19971.590Mola_mola
MGP_SPRETEiJ_G0028747Sbno110093.683ENSMODG00000012470SBNO19993.826Monodelphis_domestica
MGP_SPRETEiJ_G0028747Sbno19590.789ENSMALG00000001056sbno19975.792Monopterus_albus
MGP_SPRETEiJ_G0028747Sbno110099.568MGP_CAROLIEiJ_G0027749Sbno110099.568Mus_caroli
MGP_SPRETEiJ_G0028747Sbno1100100.000ENSMUSG00000038095Sbno1100100.000Mus_musculus
MGP_SPRETEiJ_G0028747Sbno110099.548MGP_PahariEiJ_G0024329Sbno110099.548Mus_pahari
MGP_SPRETEiJ_G0028747Sbno110097.205ENSMPUG00000001658SBNO19997.773Mustela_putorius_furo
MGP_SPRETEiJ_G0028747Sbno19997.126ENSMLUG00000017159SBNO19997.126Myotis_lucifugus
MGP_SPRETEiJ_G0028747Sbno19999.092ENSNGAG00000012620Sbno19899.211Nannospalax_galili
MGP_SPRETEiJ_G0028747Sbno19590.351ENSNBRG00000019189sbno19974.390Neolamprologus_brichardi
MGP_SPRETEiJ_G0028747Sbno110097.436ENSNLEG00000001502SBNO19993.386Nomascus_leucogenys
MGP_SPRETEiJ_G0028747Sbno19497.797ENSMEUG00000008768-9385.443Notamacropus_eugenii
MGP_SPRETEiJ_G0028747Sbno19598.246ENSOPRG00000011054SBNO19993.396Ochotona_princeps
MGP_SPRETEiJ_G0028747Sbno19997.428ENSODEG00000009997SBNO19999.094Octodon_degus
MGP_SPRETEiJ_G0028747Sbno19590.351ENSONIG00000015348sbno19975.794Oreochromis_niloticus
MGP_SPRETEiJ_G0028747Sbno195100.000ENSOCUG00000002441SBNO19595.766Oryctolagus_cuniculus
MGP_SPRETEiJ_G0028747Sbno19591.228ENSORLG00000001593sbno19975.273Oryzias_latipes
MGP_SPRETEiJ_G0028747Sbno19591.228ENSORLG00020015216sbno19975.352Oryzias_latipes_hni
MGP_SPRETEiJ_G0028747Sbno19591.228ENSORLG00015002726sbno19975.282Oryzias_latipes_hsok
MGP_SPRETEiJ_G0028747Sbno19591.228ENSOMEG00000019313sbno19975.159Oryzias_melastigma
MGP_SPRETEiJ_G0028747Sbno19599.561ENSOGAG00000010781-10094.428Otolemur_garnettii
MGP_SPRETEiJ_G0028747Sbno19997.128ENSOARG00000004404SBNO19997.128Ovis_aries
MGP_SPRETEiJ_G0028747Sbno110097.285ENSPPAG00000024635SBNO19999.275Pan_paniscus
MGP_SPRETEiJ_G0028747Sbno110097.703ENSPPRG00000022092SBNO110097.703Panthera_pardus
MGP_SPRETEiJ_G0028747Sbno19997.412ENSPTIG00000017803SBNO19997.412Panthera_tigris_altaica
MGP_SPRETEiJ_G0028747Sbno110097.285ENSPTRG00000005597SBNO19999.457Pan_troglodytes
MGP_SPRETEiJ_G0028747Sbno110097.134ENSPANG00000011640SBNO19999.457Papio_anubis
MGP_SPRETEiJ_G0028747Sbno19591.667ENSPKIG00000001441sbno19980.243Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0028747Sbno110092.308ENSPSIG00000009572-9991.189Pelodiscus_sinensis
MGP_SPRETEiJ_G0028747Sbno19591.667ENSPSIG00000009256-10087.471Pelodiscus_sinensis
MGP_SPRETEiJ_G0028747Sbno19384.375ENSPMGG00000017196sbno19382.222Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0028747Sbno19999.091ENSPEMG00000016087Sbno19998.732Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0028747Sbno18986.512ENSPMAG00000007246-10061.203Petromyzon_marinus
MGP_SPRETEiJ_G0028747Sbno110094.436ENSPCIG00000010985SBNO110093.472Phascolarctos_cinereus
MGP_SPRETEiJ_G0028747Sbno19591.667ENSPFOG00000005069sbno19975.736Poecilia_formosa
MGP_SPRETEiJ_G0028747Sbno19591.667ENSPLAG00000015015sbno19975.596Poecilia_latipinna
MGP_SPRETEiJ_G0028747Sbno19591.667ENSPMEG00000021212sbno19975.736Poecilia_mexicana
MGP_SPRETEiJ_G0028747Sbno19591.228ENSPREG00000017746sbno19975.386Poecilia_reticulata
MGP_SPRETEiJ_G0028747Sbno19996.981ENSPPYG00000005084SBNO19996.981Pongo_abelii
MGP_SPRETEiJ_G0028747Sbno19599.561ENSPCAG00000008634SBNO18892.149Procavia_capensis
MGP_SPRETEiJ_G0028747Sbno110098.039ENSPCOG00000024277SBNO19999.271Propithecus_coquereli
MGP_SPRETEiJ_G0028747Sbno19599.123ENSPVAG00000015304SBNO18799.006Pteropus_vampyrus
MGP_SPRETEiJ_G0028747Sbno19590.351ENSPNYG00000004291sbno19975.972Pundamilia_nyererei
MGP_SPRETEiJ_G0028747Sbno19592.105ENSPNAG00000015622sbno19979.288Pygocentrus_nattereri
MGP_SPRETEiJ_G0028747Sbno110098.851ENSRNOG00000001064Sbno110098.851Rattus_norvegicus
MGP_SPRETEiJ_G0028747Sbno110097.285ENSRROG00000034230SBNO19999.457Rhinopithecus_roxellana
MGP_SPRETEiJ_G0028747Sbno19599.561ENSSBOG00000015422SBNO19991.884Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0028747Sbno19592.544ENSSFOG00015019025sbno19979.986Scleropages_formosus
MGP_SPRETEiJ_G0028747Sbno19591.228ENSSMAG00000013640sbno19976.147Scophthalmus_maximus
MGP_SPRETEiJ_G0028747Sbno19591.228ENSSDUG00000023480sbno19976.251Seriola_dumerili
MGP_SPRETEiJ_G0028747Sbno19591.228ENSSLDG00000007928sbno19976.180Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0028747Sbno19599.561ENSSARG00000002594SBNO18997.731Sorex_araneus
MGP_SPRETEiJ_G0028747Sbno110091.704ENSSPUG00000012640SBNO19988.569Sphenodon_punctatus
MGP_SPRETEiJ_G0028747Sbno19590.351ENSSPAG00000016244sbno19975.387Stegastes_partitus
MGP_SPRETEiJ_G0028747Sbno110098.494ENSSSCG00000009776SBNO19997.773Sus_scrofa
MGP_SPRETEiJ_G0028747Sbno19596.930ENSTGUG00000005380SBNO19991.523Taeniopygia_guttata
MGP_SPRETEiJ_G0028747Sbno19590.789ENSTRUG00000018490sbno110075.299Takifugu_rubripes
MGP_SPRETEiJ_G0028747Sbno19590.789ENSTNIG00000013506sbno19971.252Tetraodon_nigroviridis
MGP_SPRETEiJ_G0028747Sbno110097.078ENSUAMG00000019671SBNO19997.629Ursus_americanus
MGP_SPRETEiJ_G0028747Sbno110097.078ENSUMAG00000004002SBNO19997.629Ursus_maritimus
MGP_SPRETEiJ_G0028747Sbno110092.122ENSVPAG00000007024SBNO19593.333Vicugna_pacos
MGP_SPRETEiJ_G0028747Sbno110096.696ENSVVUG00000027807SBNO19997.414Vulpes_vulpes
MGP_SPRETEiJ_G0028747Sbno19595.175ENSXETG00000031930SBNO110082.286Xenopus_tropicalis
MGP_SPRETEiJ_G0028747Sbno19591.667ENSXCOG00000011607sbno19674.168Xiphophorus_couchianus
MGP_SPRETEiJ_G0028747Sbno19591.667ENSXMAG00000002140sbno19975.647Xiphophorus_maculatus

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