EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0028751 (Gene tree)
Gene ID: -
Gene Symbol: Snrnp35
Alias: 6330548G22Rik
Full Name: small nuclear ribonucleoprotein 35 (U11/U12)
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 7935 bases
Position: chr5:124165874-124173808
Accession: 1923417
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0073583	RRM_1	PF00076.22	1.1e-16	1	1
MGP_SPRETEiJ_P0073582	RRM_1	PF00076.22	1.3e-16	1	1
MGP_SPRETEiJ_P0073584	RRM_1	PF00076.22	1.3e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0073582	-	1115	-	MGP_SPRETEiJ_P0073582	244 (aa)	-	UPI000000B2D0
MGP_SPRETEiJ_T0073583	-	449	-	MGP_SPRETEiJ_P0073583	121 (aa)	-	UPI00015AA31A
MGP_SPRETEiJ_T0073584	-	1181	-	MGP_SPRETEiJ_P0073584	244 (aa)	-	UPI000000B2D0

Gene Model

Click here to download MGP_SPRETEiJ_G0028751's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0028751's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0028751	Snrnp35	60	34.211	MGP_SPRETEiJ_G0026330	Rbm8a	70	30.000
MGP_SPRETEiJ_G0028751	Snrnp35	55	34.848	MGP_SPRETEiJ_G0034063	Rbm3	73	33.333
MGP_SPRETEiJ_G0028751	Snrnp35	64	48.718	MGP_SPRETEiJ_G0030812	Snrnp70	70	46.667
MGP_SPRETEiJ_G0028751	Snrnp35	59	33.803	MGP_SPRETEiJ_G0027258	Elavl4	57	37.037
MGP_SPRETEiJ_G0028751	Snrnp35	60	37.500	MGP_SPRETEiJ_G0027124	Elavl2	67	35.714
MGP_SPRETEiJ_G0028751	Snrnp35	55	36.364	MGP_SPRETEiJ_G0034253	Rbmx	71	35.616

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSG00000184209	SNRNP35	100	89.024	Homo_sapiens
MGP_SPRETEiJ_G0028751	Snrnp35	100	96.694	ENSAMEG00000019650	SNRNP35	99	89.431	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0028751	Snrnp35	100	80.165	ENSACIG00000003238	snrnp35	80	82.353	Amphilophus_citrinellus
MGP_SPRETEiJ_G0028751	Snrnp35	100	76.860	ENSAOCG00000007701	snrnp35	79	80.000	Amphiprion_ocellaris
MGP_SPRETEiJ_G0028751	Snrnp35	100	76.860	ENSAPEG00000023725	snrnp35	82	78.286	Amphiprion_percula
MGP_SPRETEiJ_G0028751	Snrnp35	100	77.686	ENSATEG00000021269	snrnp35	88	79.412	Anabas_testudineus
MGP_SPRETEiJ_G0028751	Snrnp35	100	90.083	ENSAPLG00000015654	SNRNP35	90	80.717	Anas_platyrhynchos
MGP_SPRETEiJ_G0028751	Snrnp35	100	86.777	ENSACAG00000015421	SNRNP35	82	78.802	Anolis_carolinensis
MGP_SPRETEiJ_G0028751	Snrnp35	100	94.215	ENSANAG00000025109	SNRNP35	97	87.854	Aotus_nancymaae
MGP_SPRETEiJ_G0028751	Snrnp35	100	79.339	ENSACLG00000020994	SNRNP35	81	81.765	Astatotilapia_calliptera
MGP_SPRETEiJ_G0028751	Snrnp35	100	79.339	ENSACLG00000020890	snrnp35	81	81.765	Astatotilapia_calliptera
MGP_SPRETEiJ_G0028751	Snrnp35	100	76.033	ENSAMXG00000026163	snrnp35	80	80.357	Astyanax_mexicanus
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSBTAG00000008060	SNRNP35	100	89.837	Bos_taurus
MGP_SPRETEiJ_G0028751	Snrnp35	100	93.388	ENSCJAG00000007131	SNRNP35	98	89.024	Callithrix_jacchus
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSCAFG00000007484	SNRNP35	100	88.211	Canis_familiaris
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSCAFG00020015272	-	100	88.211	Canis_lupus_dingo
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSCHIG00000006364	SNRNP35	100	89.837	Capra_hircus
MGP_SPRETEiJ_G0028751	Snrnp35	100	96.694	ENSTSYG00000034104	SNRNP35	99	90.244	Carlito_syrichta
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.041	ENSCPOG00000002548	SNRNP35	100	87.398	Cavia_porcellus
MGP_SPRETEiJ_G0028751	Snrnp35	100	94.215	ENSCCAG00000001685	SNRNP35	98	87.854	Cebus_capucinus
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSCATG00000021946	SNRNP35	99	89.024	Cercocebus_atys
MGP_SPRETEiJ_G0028751	Snrnp35	100	94.215	ENSCLAG00000010232	SNRNP35	100	87.805	Chinchilla_lanigera
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSCSAG00000018950	SNRNP35	100	88.618	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0028751	Snrnp35	100	96.694	ENSCHOG00000006263	SNRNP35	99	91.057	Choloepus_hoffmanni
MGP_SPRETEiJ_G0028751	Snrnp35	100	86.777	ENSCPBG00000025965	SNRNP35	91	74.797	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0028751	Snrnp35	95	53.913	ENSCSAVG00000000748	-	94	57.396	Ciona_savignyi
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.041	ENSCANG00000025364	SNRNP35	98	88.211	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0028751	Snrnp35	100	99.174	ENSCGRG00001012630	Snrnp35	100	95.935	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0028751	Snrnp35	100	99.174	ENSCGRG00000002063	Snrnp35	100	95.935	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0028751	Snrnp35	98	75.630	ENSDARG00000099913	snrnp35	81	76.786	Danio_rerio
MGP_SPRETEiJ_G0028751	Snrnp35	100	96.694	ENSDNOG00000038603	SNRNP35	100	91.870	Dasypus_novemcinctus
MGP_SPRETEiJ_G0028751	Snrnp35	100	96.694	ENSDORG00000001859	Snrnp35	100	90.650	Dipodomys_ordii
MGP_SPRETEiJ_G0028751	Snrnp35	98	51.695	ENSEBUG00000003535	snrnp35	62	60.241	Eptatretus_burgeri
MGP_SPRETEiJ_G0028751	Snrnp35	100	96.694	ENSEASG00005012617	SNRNP35	99	90.574	Equus_asinus_asinus
MGP_SPRETEiJ_G0028751	Snrnp35	100	96.694	ENSECAG00000006080	SNRNP35	99	90.574	Equus_caballus
MGP_SPRETEiJ_G0028751	Snrnp35	100	94.215	ENSEEUG00000011544	SNRNP35	80	91.878	Erinaceus_europaeus
MGP_SPRETEiJ_G0028751	Snrnp35	100	79.339	ENSELUG00000000071	snrnp35	72	79.885	Esox_lucius
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSFCAG00000001159	SNRNP35	98	89.431	Felis_catus
MGP_SPRETEiJ_G0028751	Snrnp35	100	90.083	ENSFALG00000014650	SNRNP35	100	76.639	Ficedula_albicollis
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.041	ENSFDAG00000018743	SNRNP35	100	78.862	Fukomys_damarensis
MGP_SPRETEiJ_G0028751	Snrnp35	100	75.207	ENSGMOG00000002299	snrnp35	73	77.059	Gadus_morhua
MGP_SPRETEiJ_G0028751	Snrnp35	100	90.083	ENSGALG00000003318	SNRNP35	91	76.033	Gallus_gallus
MGP_SPRETEiJ_G0028751	Snrnp35	100	75.207	ENSGACG00000020631	snrnp35	73	77.647	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSGGOG00000015936	SNRNP35	98	89.024	Gorilla_gorilla
MGP_SPRETEiJ_G0028751	Snrnp35	100	79.339	ENSHBUG00000015853	snrnp35	80	81.765	Haplochromis_burtoni
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.041	ENSHGLG00000017961	SNRNP35	100	88.211	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.041	ENSHGLG00100019252	SNRNP35	100	88.211	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0028751	Snrnp35	100	71.901	ENSIPUG00000016053	snrnp35	66	74.857	Ictalurus_punctatus
MGP_SPRETEiJ_G0028751	Snrnp35	100	92.562	ENSSTOG00000025145	SNRNP35	100	84.553	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0028751	Snrnp35	100	98.347	ENSJJAG00000013421	Snrnp35	97	91.463	Jaculus_jaculus
MGP_SPRETEiJ_G0028751	Snrnp35	100	85.950	ENSLACG00000017176	SNRNP35	87	72.131	Latimeria_chalumnae
MGP_SPRETEiJ_G0028751	Snrnp35	100	78.512	ENSLOCG00000018154	snrnp35	64	80.460	Lepisosteus_oculatus
MGP_SPRETEiJ_G0028751	Snrnp35	100	94.215	ENSLAFG00000022302	SNRNP35	100	89.431	Loxodonta_africana
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSMFAG00000008986	SNRNP35	99	88.618	Macaca_fascicularis
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSMMUG00000008411	SNRNP35	99	88.618	Macaca_mulatta
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSMNEG00000018139	SNRNP35	99	88.618	Macaca_nemestrina
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSMLEG00000040998	SNRNP35	98	89.024	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0028751	Snrnp35	100	80.165	ENSMAMG00000018927	snrnp35	89	70.833	Mastacembelus_armatus
MGP_SPRETEiJ_G0028751	Snrnp35	96	70.690	ENSMZEG00005018947	-	78	75.758	Maylandia_zebra
MGP_SPRETEiJ_G0028751	Snrnp35	100	79.339	ENSMZEG00005018928	snrnp35	81	81.765	Maylandia_zebra
MGP_SPRETEiJ_G0028751	Snrnp35	100	90.083	ENSMGAG00000003241	SNRNP35	100	76.639	Meleagris_gallopavo
MGP_SPRETEiJ_G0028751	Snrnp35	100	99.174	ENSMAUG00000001690	Snrnp35	100	97.154	Mesocricetus_auratus
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.041	ENSMICG00000026512	SNRNP35	98	89.837	Microcebus_murinus
MGP_SPRETEiJ_G0028751	Snrnp35	100	97.521	ENSMOCG00000000548	Snrnp35	100	95.935	Microtus_ochrogaster
MGP_SPRETEiJ_G0028751	Snrnp35	100	77.686	ENSMMOG00000018779	snrnp35	72	80.000	Mola_mola
MGP_SPRETEiJ_G0028751	Snrnp35	100	87.603	ENSMODG00000012481	SNRNP35	97	87.931	Monodelphis_domestica
MGP_SPRETEiJ_G0028751	Snrnp35	100	99.180	MGP_CAROLIEiJ_G0027752	Snrnp35	100	99.180	Mus_caroli
MGP_SPRETEiJ_G0028751	Snrnp35	100	100.000	ENSMUSG00000029402	Snrnp35	100	100.000	Mus_musculus
MGP_SPRETEiJ_G0028751	Snrnp35	100	100.000	MGP_PahariEiJ_G0024332	Snrnp35	100	100.000	Mus_pahari
MGP_SPRETEiJ_G0028751	Snrnp35	100	96.694	ENSMPUG00000019392	SNRNP35	100	89.431	Mustela_putorius_furo
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.041	ENSMLUG00000025311	SNRNP35	100	87.398	Myotis_lucifugus
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.041	ENSNGAG00000010711	Snrnp35	100	91.935	Nannospalax_galili
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSNLEG00000029859	SNRNP35	98	89.024	Nomascus_leucogenys
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.041	ENSOPRG00000011119	SNRNP35	99	86.585	Ochotona_princeps
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSODEG00000019870	SNRNP35	100	89.431	Octodon_degus
MGP_SPRETEiJ_G0028751	Snrnp35	100	79.339	ENSONIG00000021361	snrnp35	72	81.765	Oreochromis_niloticus
MGP_SPRETEiJ_G0028751	Snrnp35	100	88.430	ENSOANG00000002697	SNRNP35	95	81.739	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSOCUG00000021248	SNRNP35	100	87.398	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0028751	Snrnp35	100	79.339	ENSORLG00000005673	snrnp35	79	82.738	Oryzias_latipes
MGP_SPRETEiJ_G0028751	Snrnp35	100	80.165	ENSORLG00015014439	snrnp35	82	83.333	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.041	ENSOGAG00000011301	SNRNP35	100	90.650	Otolemur_garnettii
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSOARG00000004583	SNRNP35	100	89.837	Ovis_aries
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSPPAG00000000480	SNRNP35	98	88.618	Pan_paniscus
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSPPRG00000013139	SNRNP35	98	89.024	Panthera_pardus
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSPTIG00000015832	SNRNP35	98	89.024	Panthera_tigris_altaica
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSPTRG00000023573	SNRNP35	98	88.618	Pan_troglodytes
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSPANG00000019739	SNRNP35	98	89.024	Papio_anubis
MGP_SPRETEiJ_G0028751	Snrnp35	100	76.860	ENSPKIG00000005221	snrnp35	81	79.882	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0028751	Snrnp35	100	87.603	ENSPSIG00000000450	SNRNP35	91	74.797	Pelodiscus_sinensis
MGP_SPRETEiJ_G0028751	Snrnp35	100	85.950	ENSPCIG00000010978	SNRNP35	93	78.455	Phascolarctos_cinereus
MGP_SPRETEiJ_G0028751	Snrnp35	100	81.818	ENSPFOG00000019881	snrnp35	76	84.524	Poecilia_formosa
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSPPYG00000005088	SNRNP35	98	89.024	Pongo_abelii
MGP_SPRETEiJ_G0028751	Snrnp35	100	94.215	ENSPCAG00000011478	SNRNP35	99	87.805	Procavia_capensis
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSPCOG00000009946	SNRNP35	99	90.650	Propithecus_coquereli
MGP_SPRETEiJ_G0028751	Snrnp35	100	96.694	ENSPVAG00000015317	SNRNP35	99	89.837	Pteropus_vampyrus
MGP_SPRETEiJ_G0028751	Snrnp35	100	79.339	ENSPNAG00000020589	snrnp35	69	79.661	Pygocentrus_nattereri
MGP_SPRETEiJ_G0028751	Snrnp35	100	99.174	ENSRNOG00000001060	Snrnp35	100	97.951	Rattus_norvegicus
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSRBIG00000043111	SNRNP35	98	88.618	Rhinopithecus_bieti
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSRROG00000032878	SNRNP35	98	88.618	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0028751	Snrnp35	100	94.215	ENSSBOG00000012231	SNRNP35	98	87.854	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0028751	Snrnp35	100	85.124	ENSSHAG00000015558	-	100	76.829	Sarcophilus_harrisii
MGP_SPRETEiJ_G0028751	Snrnp35	100	84.298	ENSSHAG00000001216	-	100	74.797	Sarcophilus_harrisii
MGP_SPRETEiJ_G0028751	Snrnp35	100	77.686	ENSSFOG00015003785	snrnp35	90	81.065	Scleropages_formosus
MGP_SPRETEiJ_G0028751	Snrnp35	100	77.686	ENSSLDG00000017209	snrnp35	80	80.000	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.041	ENSSARG00000012656	SNRNP35	99	86.992	Sorex_araneus
MGP_SPRETEiJ_G0028751	Snrnp35	100	83.471	ENSSPUG00000012768	SNRNP35	93	72.358	Sphenodon_punctatus
MGP_SPRETEiJ_G0028751	Snrnp35	100	77.686	ENSSPAG00000008207	snrnp35	79	80.588	Stegastes_partitus
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.041	ENSSSCG00000022212	SNRNP35	99	91.038	Sus_scrofa
MGP_SPRETEiJ_G0028751	Snrnp35	100	87.603	ENSTGUG00000015471	-	91	75.820	Taeniopygia_guttata
MGP_SPRETEiJ_G0028751	Snrnp35	100	90.083	ENSTGUG00000005364	-	100	76.446	Taeniopygia_guttata
MGP_SPRETEiJ_G0028751	Snrnp35	100	77.686	ENSTNIG00000009984	snrnp35	80	80.357	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.041	ENSTBEG00000002309	SNRNP35	99	87.805	Tupaia_belangeri
MGP_SPRETEiJ_G0028751	Snrnp35	100	96.694	ENSUAMG00000012611	SNRNP35	100	89.431	Ursus_americanus
MGP_SPRETEiJ_G0028751	Snrnp35	100	96.694	ENSUMAG00000003914	SNRNP35	97	89.431	Ursus_maritimus
MGP_SPRETEiJ_G0028751	Snrnp35	100	95.868	ENSVVUG00000027761	-	100	88.211	Vulpes_vulpes
MGP_SPRETEiJ_G0028751	Snrnp35	100	81.818	ENSXMAG00000019885	snrnp35	67	84.524	Xiphophorus_maculatus