EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0028779 (Gene tree)
Gene ID: -
Gene Symbol: Sfswap
Alias: 1190005N23Rik|6330437E22Rik|Sfrs8
Full Name: splicing factor SWAP
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 69988 bases
Position: chr5:129405823-129475810
Accession: 101760
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0073726	DRY_EERY	PF09750.9	1.2e-32	1	1
MGP_SPRETEiJ_P0073726	Surp	PF01805.20	9.1e-27	1	2
MGP_SPRETEiJ_P0073726	Surp	PF01805.20	9.1e-27	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0073738	-	1277	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0073740	-	668	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0073731	-	657	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0073730	-	437	-	MGP_SPRETEiJ_P0073730	82 (aa)	-	UPI000620AA1A
MGP_SPRETEiJ_T0073733	-	305	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0073732	-	692	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0073726	-	3313	-	MGP_SPRETEiJ_P0073726	945 (aa)	-	-
MGP_SPRETEiJ_T0073727	-	2625	-	MGP_SPRETEiJ_P0073727	121 (aa)	-	UPI000620AB78
MGP_SPRETEiJ_T0073737	-	426	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0073736	-	2105	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0073739	-	690	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0073735	-	559	-	MGP_SPRETEiJ_P0073735	68 (aa)	-	-
MGP_SPRETEiJ_T0073728	-	3410	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0073729	-	5133	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0073734	-	730	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0028779's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0028779's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0028779	Sfswap	68	37.805	ENSG00000104859	CLASRP	53	47.826	Homo_sapiens
MGP_SPRETEiJ_G0028779	Sfswap	100	90.909	ENSG00000061936	SFSWAP	100	90.909	Homo_sapiens
MGP_SPRETEiJ_G0028779	Sfswap	84	64.423	ENSAPOG00000005784	sfswap	86	80.952	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0028779	Sfswap	94	90.351	ENSAMEG00000013818	SFSWAP	100	84.583	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0028779	Sfswap	84	64.423	ENSACIG00000009240	-	68	80.000	Amphilophus_citrinellus
MGP_SPRETEiJ_G0028779	Sfswap	67	77.778	ENSAOCG00000016469	sfswap	97	50.858	Amphiprion_ocellaris
MGP_SPRETEiJ_G0028779	Sfswap	67	77.778	ENSAPEG00000004965	sfswap	97	51.570	Amphiprion_percula
MGP_SPRETEiJ_G0028779	Sfswap	76	81.818	ENSATEG00000021053	sfswap	56	62.683	Anabas_testudineus
MGP_SPRETEiJ_G0028779	Sfswap	100	75.444	ENSAPLG00000013808	SFSWAP	97	76.699	Anas_platyrhynchos
MGP_SPRETEiJ_G0028779	Sfswap	100	88.105	ENSANAG00000001518	SFSWAP	100	88.105	Aotus_nancymaae
MGP_SPRETEiJ_G0028779	Sfswap	84	64.423	ENSACLG00000020159	sfswap	84	67.209	Astatotilapia_calliptera
MGP_SPRETEiJ_G0028779	Sfswap	100	87.553	ENSBTAG00000000439	SFSWAP	100	87.342	Bos_taurus
MGP_SPRETEiJ_G0028779	Sfswap	100	88.409	ENSCJAG00000003613	SFSWAP	100	87.566	Callithrix_jacchus
MGP_SPRETEiJ_G0028779	Sfswap	100	85.729	ENSCAFG00000006625	SFSWAP	100	85.941	Canis_familiaris
MGP_SPRETEiJ_G0028779	Sfswap	87	78.851	ENSCAFG00020011254	SFSWAP	99	78.967	Canis_lupus_dingo
MGP_SPRETEiJ_G0028779	Sfswap	100	87.447	ENSCHIG00000008838	SFSWAP	100	87.236	Capra_hircus
MGP_SPRETEiJ_G0028779	Sfswap	100	87.869	ENSTSYG00000010303	SFSWAP	100	88.502	Carlito_syrichta
MGP_SPRETEiJ_G0028779	Sfswap	92	87.229	ENSCAPG00000004394	SFSWAP	96	88.027	Cavia_aperea
MGP_SPRETEiJ_G0028779	Sfswap	94	95.614	ENSCPOG00000005280	SFSWAP	100	88.198	Cavia_porcellus
MGP_SPRETEiJ_G0028779	Sfswap	100	87.882	ENSCCAG00000037255	SFSWAP	100	87.355	Cebus_capucinus
MGP_SPRETEiJ_G0028779	Sfswap	100	88.924	ENSCATG00000031094	SFSWAP	100	89.030	Cercocebus_atys
MGP_SPRETEiJ_G0028779	Sfswap	94	96.491	ENSCLAG00000008380	SFSWAP	100	90.084	Chinchilla_lanigera
MGP_SPRETEiJ_G0028779	Sfswap	100	88.713	ENSCSAG00000001884	SFSWAP	100	88.819	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0028779	Sfswap	92	72.779	ENSCHOG00000003578	SFSWAP	100	72.893	Choloepus_hoffmanni
MGP_SPRETEiJ_G0028779	Sfswap	100	88.924	ENSCANG00000036501	SFSWAP	100	89.030	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0028779	Sfswap	100	96.296	ENSCGRG00001011284	Sfswap	100	96.296	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0028779	Sfswap	100	96.296	ENSCGRG00000017417	Sfswap	100	96.296	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0028779	Sfswap	52	59.740	ENSCVAG00000001205	-	72	48.276	Cyprinodon_variegatus
MGP_SPRETEiJ_G0028779	Sfswap	100	59.504	ENSCVAG00000001208	-	100	59.504	Cyprinodon_variegatus
MGP_SPRETEiJ_G0028779	Sfswap	94	89.474	ENSDNOG00000018742	SFSWAP	100	84.076	Dasypus_novemcinctus
MGP_SPRETEiJ_G0028779	Sfswap	97	83.224	ENSDORG00000010352	Sfswap	99	82.462	Dipodomys_ordii
MGP_SPRETEiJ_G0028779	Sfswap	68	56.627	FBgn0003638	su(w[a])	56	55.556	Drosophila_melanogaster
MGP_SPRETEiJ_G0028779	Sfswap	86	69.697	ENSETEG00000016657	-	91	70.034	Echinops_telfairi
MGP_SPRETEiJ_G0028779	Sfswap	84	38.207	ENSEBUG00000016748	SFSWAP	93	43.421	Eptatretus_burgeri
MGP_SPRETEiJ_G0028779	Sfswap	100	87.236	ENSEASG00005016502	SFSWAP	100	87.658	Equus_asinus_asinus
MGP_SPRETEiJ_G0028779	Sfswap	98	86.947	ENSECAG00000007657	SFSWAP	99	87.379	Equus_caballus
MGP_SPRETEiJ_G0028779	Sfswap	86	73.562	ENSEEUG00000001713	SFSWAP	99	73.252	Erinaceus_europaeus
MGP_SPRETEiJ_G0028779	Sfswap	94	66.667	ENSELUG00000010942	sfswap	100	64.337	Esox_lucius
MGP_SPRETEiJ_G0028779	Sfswap	100	85.850	ENSFCAG00000010778	SFSWAP	100	86.167	Felis_catus
MGP_SPRETEiJ_G0028779	Sfswap	100	75.026	ENSFALG00000009577	SFSWAP	51	76.113	Ficedula_albicollis
MGP_SPRETEiJ_G0028779	Sfswap	94	96.491	ENSFDAG00000017235	SFSWAP	100	89.286	Fukomys_damarensis
MGP_SPRETEiJ_G0028779	Sfswap	94	61.404	ENSFHEG00000011149	-	99	55.679	Fundulus_heteroclitus
MGP_SPRETEiJ_G0028779	Sfswap	67	77.778	ENSGMOG00000009205	sfswap	76	71.096	Gadus_morhua
MGP_SPRETEiJ_G0028779	Sfswap	97	76.584	ENSGALG00000002487	SFSWAP	97	76.559	Gallus_gallus
MGP_SPRETEiJ_G0028779	Sfswap	67	77.778	ENSGAFG00000006272	sfswap	89	68.022	Gambusia_affinis
MGP_SPRETEiJ_G0028779	Sfswap	75	72.549	ENSGACG00000017647	sfswap	99	53.433	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0028779	Sfswap	100	73.011	ENSGAGG00000002611	SFSWAP	96	75.502	Gopherus_agassizii
MGP_SPRETEiJ_G0028779	Sfswap	100	88.328	ENSGGOG00000014877	SFSWAP	100	88.749	Gorilla_gorilla
MGP_SPRETEiJ_G0028779	Sfswap	84	64.423	ENSHBUG00000005629	sfswap	54	67.655	Haplochromis_burtoni
MGP_SPRETEiJ_G0028779	Sfswap	100	90.717	ENSHGLG00000019216	SFSWAP	100	90.823	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0028779	Sfswap	100	90.506	ENSHGLG00100019350	SFSWAP	100	90.612	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0028779	Sfswap	84	62.857	ENSHCOG00000009475	sfswap	97	50.970	Hippocampus_comes
MGP_SPRETEiJ_G0028779	Sfswap	92	67.419	ENSIPUG00000010598	sfswap	99	51.521	Ictalurus_punctatus
MGP_SPRETEiJ_G0028779	Sfswap	100	89.440	ENSSTOG00000000773	SFSWAP	100	89.440	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0028779	Sfswap	100	90.928	ENSJJAG00000006609	Sfswap	100	91.034	Jaculus_jaculus
MGP_SPRETEiJ_G0028779	Sfswap	67	77.778	ENSKMAG00000013168	sfswap	89	65.854	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0028779	Sfswap	100	65.123	ENSLACG00000018678	SFSWAP	96	64.984	Latimeria_chalumnae
MGP_SPRETEiJ_G0028779	Sfswap	92	84.589	ENSLAFG00000014462	SFSWAP	100	84.932	Loxodonta_africana
MGP_SPRETEiJ_G0028779	Sfswap	98	88.889	ENSMFAG00000037352	SFSWAP	100	81.555	Macaca_fascicularis
MGP_SPRETEiJ_G0028779	Sfswap	100	89.030	ENSMMUG00000020343	SFSWAP	100	88.713	Macaca_mulatta
MGP_SPRETEiJ_G0028779	Sfswap	100	89.030	ENSMNEG00000041002	SFSWAP	100	88.713	Macaca_nemestrina
MGP_SPRETEiJ_G0028779	Sfswap	100	86.709	ENSMLEG00000035728	SFSWAP	100	86.287	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0028779	Sfswap	88	62.500	ENSMZEG00005009699	-	75	73.333	Maylandia_zebra
MGP_SPRETEiJ_G0028779	Sfswap	97	68.539	ENSMGAG00000002191	SFSWAP	97	69.786	Meleagris_gallopavo
MGP_SPRETEiJ_G0028779	Sfswap	100	88.279	ENSMICG00000004465	SFSWAP	100	89.229	Microcebus_murinus
MGP_SPRETEiJ_G0028779	Sfswap	100	96.190	ENSMOCG00000014390	Sfswap	100	96.190	Microtus_ochrogaster
MGP_SPRETEiJ_G0028779	Sfswap	84	49.057	ENSMMOG00000021053	-	76	64.685	Mola_mola
MGP_SPRETEiJ_G0028779	Sfswap	67	77.778	ENSMALG00000012603	sfswap	97	50.000	Monopterus_albus
MGP_SPRETEiJ_G0028779	Sfswap	100	100.000	MGP_CAROLIEiJ_G0027780	Sfswap	100	100.000	Mus_caroli
MGP_SPRETEiJ_G0028779	Sfswap	100	100.000	ENSMUSG00000029439	Sfswap	100	100.000	Mus_musculus
MGP_SPRETEiJ_G0028779	Sfswap	100	99.174	MGP_PahariEiJ_G0024360	Sfswap	100	99.174	Mus_pahari
MGP_SPRETEiJ_G0028779	Sfswap	100	85.095	ENSMPUG00000002218	SFSWAP	100	84.989	Mustela_putorius_furo
MGP_SPRETEiJ_G0028779	Sfswap	94	89.474	ENSMLUG00000011296	SFSWAP	100	76.949	Myotis_lucifugus
MGP_SPRETEiJ_G0028779	Sfswap	100	92.397	ENSNGAG00000018167	Sfswap	100	92.397	Nannospalax_galili
MGP_SPRETEiJ_G0028779	Sfswap	68	57.715	ENSNBRG00000020857	sfswap	91	66.269	Neolamprologus_brichardi
MGP_SPRETEiJ_G0028779	Sfswap	100	86.526	ENSNLEG00000008386	SFSWAP	100	86.632	Nomascus_leucogenys
MGP_SPRETEiJ_G0028779	Sfswap	71	86.594	ENSMEUG00000009556	-	79	86.594	Notamacropus_eugenii
MGP_SPRETEiJ_G0028779	Sfswap	100	74.000	ENSOPRG00000006983	-	100	74.000	Ochotona_princeps
MGP_SPRETEiJ_G0028779	Sfswap	100	89.979	ENSODEG00000008020	SFSWAP	100	89.979	Octodon_degus
MGP_SPRETEiJ_G0028779	Sfswap	96	53.327	ENSONIG00000003757	sfswap	99	51.992	Oreochromis_niloticus
MGP_SPRETEiJ_G0028779	Sfswap	51	78.732	ENSOANG00000013861	SFSWAP	100	81.870	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0028779	Sfswap	94	92.982	ENSOCUG00000002165	SFSWAP	100	84.194	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0028779	Sfswap	67	77.778	ENSOMEG00000022065	sfswap	55	67.568	Oryzias_melastigma
MGP_SPRETEiJ_G0028779	Sfswap	94	90.351	ENSOGAG00000016724	SFSWAP	99	87.721	Otolemur_garnettii
MGP_SPRETEiJ_G0028779	Sfswap	100	86.947	ENSOARG00000014314	SFSWAP	100	86.737	Ovis_aries
MGP_SPRETEiJ_G0028779	Sfswap	100	88.118	ENSPPAG00000036706	SFSWAP	100	88.538	Pan_paniscus
MGP_SPRETEiJ_G0028779	Sfswap	94	87.719	ENSPTIG00000004304	SFSWAP	97	86.216	Panthera_tigris_altaica
MGP_SPRETEiJ_G0028779	Sfswap	100	87.907	ENSPTRG00000005640	SFSWAP	100	88.328	Pan_troglodytes
MGP_SPRETEiJ_G0028779	Sfswap	100	88.924	ENSPANG00000019737	SFSWAP	100	89.030	Papio_anubis
MGP_SPRETEiJ_G0028779	Sfswap	84	70.192	ENSPKIG00000008327	sfswap	100	54.158	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0028779	Sfswap	61	62.677	ENSPSIG00000017807	SFSWAP	86	65.385	Pelodiscus_sinensis
MGP_SPRETEiJ_G0028779	Sfswap	100	59.350	ENSPMGG00000008093	-	97	59.016	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0028779	Sfswap	100	96.195	ENSPEMG00000001237	Sfswap	100	96.195	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0028779	Sfswap	71	75.581	ENSPMAG00000008279	sfswap	77	62.535	Petromyzon_marinus
MGP_SPRETEiJ_G0028779	Sfswap	94	60.526	ENSPLAG00000008513	sfswap	91	63.840	Poecilia_latipinna
MGP_SPRETEiJ_G0028779	Sfswap	94	60.526	ENSPREG00000006692	sfswap	53	47.985	Poecilia_reticulata
MGP_SPRETEiJ_G0028779	Sfswap	94	92.105	ENSPPYG00000005129	SFSWAP	100	88.210	Pongo_abelii
MGP_SPRETEiJ_G0028779	Sfswap	94	90.351	ENSPCAG00000004977	-	65	87.500	Procavia_capensis
MGP_SPRETEiJ_G0028779	Sfswap	100	87.658	ENSPCOG00000023786	SFSWAP	100	88.924	Propithecus_coquereli
MGP_SPRETEiJ_G0028779	Sfswap	94	89.474	ENSPVAG00000014918	SFSWAP	92	85.185	Pteropus_vampyrus
MGP_SPRETEiJ_G0028779	Sfswap	84	64.423	ENSPNYG00000012660	sfswap	53	66.938	Pundamilia_nyererei
MGP_SPRETEiJ_G0028779	Sfswap	100	95.556	ENSRNOG00000000931	Sfswap	99	98.678	Rattus_norvegicus
MGP_SPRETEiJ_G0028779	Sfswap	94	92.105	ENSRBIG00000036330	SFSWAP	100	83.122	Rhinopithecus_bieti
MGP_SPRETEiJ_G0028779	Sfswap	100	88.608	ENSRROG00000032001	SFSWAP	100	88.713	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0028779	Sfswap	100	88.294	ENSSBOG00000026217	SFSWAP	100	88.294	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0028779	Sfswap	92	80.565	ENSSHAG00000014232	SFSWAP	100	81.787	Sarcophilus_harrisii
MGP_SPRETEiJ_G0028779	Sfswap	67	75.309	ENSSMAG00000018718	sfswap	54	65.699	Scophthalmus_maximus
MGP_SPRETEiJ_G0028779	Sfswap	67	79.012	ENSSDUG00000021680	sfswap	53	67.192	Seriola_dumerili
MGP_SPRETEiJ_G0028779	Sfswap	67	79.012	ENSSLDG00000010835	sfswap	53	67.192	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0028779	Sfswap	78	87.379	ENSSARG00000000424	SFSWAP	85	87.379	Sorex_araneus
MGP_SPRETEiJ_G0028779	Sfswap	87	73.855	ENSSPUG00000010272	SFSWAP	99	75.000	Sphenodon_punctatus
MGP_SPRETEiJ_G0028779	Sfswap	67	77.778	ENSSPAG00000014310	sfswap	55	67.819	Stegastes_partitus
MGP_SPRETEiJ_G0028779	Sfswap	100	87.158	ENSSSCG00000009744	SFSWAP	100	87.368	Sus_scrofa
MGP_SPRETEiJ_G0028779	Sfswap	97	76.782	ENSTGUG00000004623	SFSWAP	99	76.706	Taeniopygia_guttata
MGP_SPRETEiJ_G0028779	Sfswap	89	64.815	ENSTNIG00000006156	-	99	60.494	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0028779	Sfswap	54	90.625	ENSTBEG00000004983	-	66	90.625	Tupaia_belangeri
MGP_SPRETEiJ_G0028779	Sfswap	94	90.351	ENSTTRG00000013478	SFSWAP	93	91.627	Tursiops_truncatus
MGP_SPRETEiJ_G0028779	Sfswap	100	84.372	ENSUAMG00000016807	SFSWAP	100	84.672	Ursus_americanus
MGP_SPRETEiJ_G0028779	Sfswap	94	90.351	ENSUMAG00000002957	SFSWAP	91	85.504	Ursus_maritimus
MGP_SPRETEiJ_G0028779	Sfswap	94	89.474	ENSVPAG00000010479	-	65	90.244	Vicugna_pacos
MGP_SPRETEiJ_G0028779	Sfswap	100	85.835	ENSVVUG00000010753	SFSWAP	100	86.047	Vulpes_vulpes
MGP_SPRETEiJ_G0028779	Sfswap	84	63.208	ENSXCOG00000005131	sfswap	77	70.423	Xiphophorus_couchianus