EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0028844 (Gene tree)
Gene ID: -
Gene Symbol: Srrm3
Alias: 2900083I11Rik|SRm300-like|Srrm2l
Full Name: serine/arginine repetitive matrix 3
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 70162 bases
Position: chr5:136046350-136116511
Accession: 1920309
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0074117	cwf21	PF08312.12	6.1e-16	1	1
MGP_SPRETEiJ_P0074119	cwf21	PF08312.12	1.3e-14	1	1
MGP_SPRETEiJ_P0074119	SRRM_C	PF15230.6	1.2e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0074121	-	567	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0074120	-	684	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0074116	-	1857	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0074117	-	526	-	MGP_SPRETEiJ_P0074117	124 (aa)	-	-
MGP_SPRETEiJ_T0074118	-	2284	-	MGP_SPRETEiJ_P0074118	342 (aa)	-	-
MGP_SPRETEiJ_T0074119	-	3926	-	MGP_SPRETEiJ_P0074119	648 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0028844's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0028844's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0028844	Srrm3	67	58.824	MGP_SPRETEiJ_G0022071	Srrm2	70	48.739

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0028844	Srrm3	100	91.129	ENSG00000177679	SRRM3	96	88.836	Homo_sapiens
MGP_SPRETEiJ_G0028844	Srrm3	88	76.147	ENSACAG00000000452	SRRM3	50	64.336	Anolis_carolinensis
MGP_SPRETEiJ_G0028844	Srrm3	100	94.355	ENSANAG00000031983	SRRM3	60	82.933	Aotus_nancymaae
MGP_SPRETEiJ_G0028844	Srrm3	100	90.323	ENSBTAG00000007879	-	99	82.249	Bos_taurus
MGP_SPRETEiJ_G0028844	Srrm3	100	93.548	ENSCJAG00000016307	SRRM3	100	89.433	Callithrix_jacchus
MGP_SPRETEiJ_G0028844	Srrm3	100	91.935	ENSCAFG00000013537	SRRM3	73	90.311	Canis_familiaris
MGP_SPRETEiJ_G0028844	Srrm3	100	90.323	ENSCHIG00000014018	SRRM3	97	75.433	Capra_hircus
MGP_SPRETEiJ_G0028844	Srrm3	99	77.457	ENSCPOG00000038685	SRRM3	96	81.458	Cavia_porcellus
MGP_SPRETEiJ_G0028844	Srrm3	100	94.355	ENSCCAG00000033359	SRRM3	96	90.112	Cebus_capucinus
MGP_SPRETEiJ_G0028844	Srrm3	100	92.742	ENSCATG00000043129	SRRM3	57	85.196	Cercocebus_atys
MGP_SPRETEiJ_G0028844	Srrm3	100	91.935	ENSCLAG00000007682	SRRM3	100	91.935	Chinchilla_lanigera
MGP_SPRETEiJ_G0028844	Srrm3	100	91.935	ENSCSAG00000018140	SRRM3	97	87.565	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0028844	Srrm3	99	95.549	ENSCGRG00001011385	Srrm3	96	94.212	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0028844	Srrm3	94	91.453	ENSDNOG00000046922	SRRM3	96	73.844	Dasypus_novemcinctus
MGP_SPRETEiJ_G0028844	Srrm3	100	91.129	ENSEASG00005016840	-	89	91.071	Equus_asinus_asinus
MGP_SPRETEiJ_G0028844	Srrm3	100	90.323	ENSECAG00000022142	-	89	91.045	Equus_caballus
MGP_SPRETEiJ_G0028844	Srrm3	100	91.129	ENSFCAG00000044112	SRRM3	96	87.560	Felis_catus
MGP_SPRETEiJ_G0028844	Srrm3	65	96.296	ENSFDAG00000016913	SRRM3	100	96.296	Fukomys_damarensis
MGP_SPRETEiJ_G0028844	Srrm3	97	75.000	ENSGALG00000001932	SRRM3	65	68.041	Gallus_gallus
MGP_SPRETEiJ_G0028844	Srrm3	90	93.750	ENSGGOG00000036497	-	84	78.231	Gorilla_gorilla
MGP_SPRETEiJ_G0028844	Srrm3	100	91.129	ENSHGLG00000015576	SRRM3	100	91.129	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0028844	Srrm3	100	92.742	ENSSTOG00000014181	SRRM3	100	92.742	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0028844	Srrm3	96	81.515	ENSJJAG00000023441	Srrm3	96	82.137	Jaculus_jaculus
MGP_SPRETEiJ_G0028844	Srrm3	100	69.355	ENSMMUG00000046728	SRRM3	58	75.781	Macaca_mulatta
MGP_SPRETEiJ_G0028844	Srrm3	97	75.000	ENSMGAG00000003690	SRRM3	75	66.667	Meleagris_gallopavo
MGP_SPRETEiJ_G0028844	Srrm3	100	93.548	ENSMAUG00000017613	Srrm3	100	93.548	Mesocricetus_auratus
MGP_SPRETEiJ_G0028844	Srrm3	100	92.742	ENSMICG00000010668	SRRM3	95	91.369	Microcebus_murinus
MGP_SPRETEiJ_G0028844	Srrm3	100	94.753	ENSMOCG00000002565	Srrm3	96	94.695	Microtus_ochrogaster
MGP_SPRETEiJ_G0028844	Srrm3	100	99.194	MGP_CAROLIEiJ_G0027845	-	100	99.123	Mus_caroli
MGP_SPRETEiJ_G0028844	Srrm3	100	99.708	ENSMUSG00000039860	Srrm3	100	99.708	Mus_musculus
MGP_SPRETEiJ_G0028844	Srrm3	100	98.920	MGP_PahariEiJ_G0024425	Srrm3	100	98.920	Mus_pahari
MGP_SPRETEiJ_G0028844	Srrm3	100	86.290	ENSNLEG00000008423	-	54	75.595	Nomascus_leucogenys
MGP_SPRETEiJ_G0028844	Srrm3	89	85.455	ENSMEUG00000013994	SRRM3	62	85.455	Notamacropus_eugenii
MGP_SPRETEiJ_G0028844	Srrm3	100	91.129	ENSODEG00000015988	SRRM3	96	87.781	Octodon_degus
MGP_SPRETEiJ_G0028844	Srrm3	98	89.344	ENSOGAG00000030805	SRRM3	96	87.560	Otolemur_garnettii
MGP_SPRETEiJ_G0028844	Srrm3	89	90.909	ENSOARG00000013722	SRRM3	51	81.155	Ovis_aries
MGP_SPRETEiJ_G0028844	Srrm3	100	83.871	ENSPPRG00000006254	SRRM3	74	88.889	Panthera_pardus
MGP_SPRETEiJ_G0028844	Srrm3	100	92.742	ENSPTRG00000019317	SRRM3	96	89.155	Pan_troglodytes
MGP_SPRETEiJ_G0028844	Srrm3	90	94.643	ENSPANG00000000776	SRRM3	71	86.269	Papio_anubis
MGP_SPRETEiJ_G0028844	Srrm3	90	79.464	ENSPSIG00000007850	SRRM3	91	52.517	Pelodiscus_sinensis
MGP_SPRETEiJ_G0028844	Srrm3	100	95.968	ENSPEMG00000012358	-	100	95.968	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0028844	Srrm3	98	75.000	ENSPCAG00000013700	SRRM3	77	76.488	Procavia_capensis
MGP_SPRETEiJ_G0028844	Srrm3	100	91.129	ENSPCOG00000028464	SRRM3	96	86.603	Propithecus_coquereli
MGP_SPRETEiJ_G0028844	Srrm3	100	91.129	ENSPVAG00000003400	SRRM3	77	91.667	Pteropus_vampyrus
MGP_SPRETEiJ_G0028844	Srrm3	100	97.581	ENSRNOG00000001439	Srrm3	100	96.759	Rattus_norvegicus
MGP_SPRETEiJ_G0028844	Srrm3	100	91.935	ENSRROG00000034980	SRRM3	89	91.379	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0028844	Srrm3	89	79.091	ENSSPUG00000006285	SRRM3	65	79.091	Sphenodon_punctatus
MGP_SPRETEiJ_G0028844	Srrm3	100	86.290	ENSSSCG00000032250	SRRM3	64	86.614	Sus_scrofa
MGP_SPRETEiJ_G0028844	Srrm3	90	92.793	ENSTTRG00000014836	-	62	80.165	Tursiops_truncatus