EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0029012 (Gene tree)
Gene ID: -
Gene Symbol: Ptcd1
Alias: 1110069M14Rik
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 21592 bases
Position: chr5:146235759-146257350
Accession: 1919049
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0074957	PPR	PF01535.20	8.8e-17	1	2
MGP_SPRETEiJ_P0074957	PPR	PF01535.20	8.8e-17	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0074957	-	3077	-	MGP_SPRETEiJ_P0074957	695 (aa)	-	-
MGP_SPRETEiJ_T0074958	-	274	-	MGP_SPRETEiJ_P0074958	20 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0029012's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0029012's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0029012	Ptcd1	99	74.170	ENSG00000248919	ATP5MF-PTCD1	92	74.170	Homo_sapiens
MGP_SPRETEiJ_G0029012	Ptcd1	99	74.170	ENSG00000106246	PTCD1	99	74.170	Homo_sapiens
MGP_SPRETEiJ_G0029012	Ptcd1	86	45.124	ENSAPOG00000010679	ptcd1	91	44.959	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0029012	Ptcd1	99	77.667	ENSAMEG00000006224	-	93	77.383	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0029012	Ptcd1	88	49.518	ENSACIG00000017861	ptcd1	88	48.714	Amphilophus_citrinellus
MGP_SPRETEiJ_G0029012	Ptcd1	80	46.466	ENSAOCG00000022617	ptcd1	82	46.195	Amphiprion_ocellaris
MGP_SPRETEiJ_G0029012	Ptcd1	85	46.689	ENSAOCG00000020741	-	83	46.434	Amphiprion_ocellaris
MGP_SPRETEiJ_G0029012	Ptcd1	93	45.166	ENSAPEG00000022632	ptcd1	83	46.600	Amphiprion_percula
MGP_SPRETEiJ_G0029012	Ptcd1	88	48.366	ENSATEG00000007016	ptcd1	84	48.693	Anabas_testudineus
MGP_SPRETEiJ_G0029012	Ptcd1	87	58.824	ENSAPLG00000006862	-	97	58.320	Anas_platyrhynchos
MGP_SPRETEiJ_G0029012	Ptcd1	99	54.326	ENSACAG00000012871	-	92	54.326	Anolis_carolinensis
MGP_SPRETEiJ_G0029012	Ptcd1	98	73.730	ENSANAG00000035790	-	100	73.585	Aotus_nancymaae
MGP_SPRETEiJ_G0029012	Ptcd1	89	48.243	ENSACLG00000002824	ptcd1	85	47.284	Astatotilapia_calliptera
MGP_SPRETEiJ_G0029012	Ptcd1	86	48.254	ENSAMXG00000037292	ptcd1	87	47.536	Astyanax_mexicanus
MGP_SPRETEiJ_G0029012	Ptcd1	99	76.184	ENSBTAG00000020440	-	86	75.897	Bos_taurus
MGP_SPRETEiJ_G0029012	Ptcd1	99	74.425	ENSCJAG00000015815	-	99	74.425	Callithrix_jacchus
MGP_SPRETEiJ_G0029012	Ptcd1	99	76.724	ENSCAFG00000015055	-	92	76.437	Canis_familiaris
MGP_SPRETEiJ_G0029012	Ptcd1	99	76.724	ENSCAFG00020014480	-	92	76.437	Canis_lupus_dingo
MGP_SPRETEiJ_G0029012	Ptcd1	99	75.683	ENSCHIG00000027000	-	98	75.396	Capra_hircus
MGP_SPRETEiJ_G0029012	Ptcd1	99	75.284	ENSTSYG00000029495	-	99	75.284	Carlito_syrichta
MGP_SPRETEiJ_G0029012	Ptcd1	93	76.723	ENSCAPG00000014660	-	99	76.570	Cavia_aperea
MGP_SPRETEiJ_G0029012	Ptcd1	99	75.606	ENSCPOG00000001780	-	99	75.464	Cavia_porcellus
MGP_SPRETEiJ_G0029012	Ptcd1	99	73.276	ENSCCAG00000034025	-	99	73.745	Cebus_capucinus
MGP_SPRETEiJ_G0029012	Ptcd1	99	74.603	ENSCATG00000040859	-	99	74.603	Cercocebus_atys
MGP_SPRETEiJ_G0029012	Ptcd1	99	75.971	ENSCLAG00000006354	-	99	74.750	Chinchilla_lanigera
MGP_SPRETEiJ_G0029012	Ptcd1	92	74.339	ENSCSAG00000017794	-	95	74.339	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0029012	Ptcd1	86	59.335	ENSCPBG00000020866	-	85	57.812	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0029012	Ptcd1	76	30.699	ENSCING00000007717	-	91	30.515	Ciona_intestinalis
MGP_SPRETEiJ_G0029012	Ptcd1	99	74.096	ENSCANG00000023441	-	99	74.096	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0029012	Ptcd1	99	83.714	ENSCGRG00001023686	Ptcd1	99	83.714	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0029012	Ptcd1	99	82.955	ENSCGRG00000015031	Ptcd1	99	82.955	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0029012	Ptcd1	87	46.066	ENSCSEG00000002378	ptcd1	83	46.141	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0029012	Ptcd1	90	46.299	ENSCVAG00000003621	ptcd1	92	45.687	Cyprinodon_variegatus
MGP_SPRETEiJ_G0029012	Ptcd1	90	46.082	ENSCVAG00000015826	ptcd1	90	45.216	Cyprinodon_variegatus
MGP_SPRETEiJ_G0029012	Ptcd1	87	49.919	ENSDARG00000076176	ptcd1	88	49.919	Danio_rerio
MGP_SPRETEiJ_G0029012	Ptcd1	99	74.079	ENSDNOG00000009957	-	99	73.796	Dasypus_novemcinctus
MGP_SPRETEiJ_G0029012	Ptcd1	99	74.964	ENSDORG00000000740	Ptcd1	100	74.964	Dipodomys_ordii
MGP_SPRETEiJ_G0029012	Ptcd1	90	40.962	ENSEBUG00000014515	ptcd1	96	42.004	Eptatretus_burgeri
MGP_SPRETEiJ_G0029012	Ptcd1	99	77.684	ENSEASG00005002480	-	99	77.684	Equus_asinus_asinus
MGP_SPRETEiJ_G0029012	Ptcd1	99	77.966	ENSECAG00000016617	-	99	77.966	Equus_caballus
MGP_SPRETEiJ_G0029012	Ptcd1	85	47.097	ENSELUG00000016517	ptcd1	82	46.290	Esox_lucius
MGP_SPRETEiJ_G0029012	Ptcd1	99	77.364	ENSFCAG00000015069	-	99	77.221	Felis_catus
MGP_SPRETEiJ_G0029012	Ptcd1	87	59.516	ENSFALG00000013803	-	87	58.917	Ficedula_albicollis
MGP_SPRETEiJ_G0029012	Ptcd1	99	75.931	ENSFDAG00000006393	-	99	75.931	Fukomys_damarensis
MGP_SPRETEiJ_G0029012	Ptcd1	78	46.618	ENSFHEG00000012491	ptcd1	90	46.812	Fundulus_heteroclitus
MGP_SPRETEiJ_G0029012	Ptcd1	84	46.154	ENSGMOG00000007639	ptcd1	93	46.062	Gadus_morhua
MGP_SPRETEiJ_G0029012	Ptcd1	87	56.916	ENSGALG00000004711	-	88	56.279	Gallus_gallus
MGP_SPRETEiJ_G0029012	Ptcd1	84	47.811	ENSGAFG00000013175	ptcd1	82	46.745	Gambusia_affinis
MGP_SPRETEiJ_G0029012	Ptcd1	84	49.239	ENSGACG00000016607	ptcd1	89	47.746	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0029012	Ptcd1	88	56.960	ENSGAGG00000021832	-	93	56.960	Gopherus_agassizii
MGP_SPRETEiJ_G0029012	Ptcd1	99	74.170	ENSGGOG00000015123	-	99	74.170	Gorilla_gorilla
MGP_SPRETEiJ_G0029012	Ptcd1	89	48.148	ENSHBUG00000018275	ptcd1	85	46.860	Haplochromis_burtoni
MGP_SPRETEiJ_G0029012	Ptcd1	99	76.580	ENSHGLG00000017621	-	99	76.293	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0029012	Ptcd1	99	76.580	ENSHGLG00100007218	-	99	76.293	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0029012	Ptcd1	85	45.910	ENSHCOG00000010784	ptcd1	85	45.910	Hippocampus_comes
MGP_SPRETEiJ_G0029012	Ptcd1	99	76.596	ENSSTOG00000001682	-	99	76.312	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0029012	Ptcd1	99	77.922	ENSJJAG00000000319	Ptcd1	99	77.778	Jaculus_jaculus
MGP_SPRETEiJ_G0029012	Ptcd1	99	44.699	ENSKMAG00000008708	ptcd1	95	44.476	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0029012	Ptcd1	86	47.697	ENSLBEG00000008061	ptcd1	82	47.195	Labrus_bergylta
MGP_SPRETEiJ_G0029012	Ptcd1	87	56.678	ENSLACG00000011172	ptcd1	85	56.678	Latimeria_chalumnae
MGP_SPRETEiJ_G0029012	Ptcd1	89	52.484	ENSLOCG00000004833	ptcd1	93	53.255	Lepisosteus_oculatus
MGP_SPRETEiJ_G0029012	Ptcd1	99	71.105	ENSLAFG00000002588	-	99	70.397	Loxodonta_africana
MGP_SPRETEiJ_G0029012	Ptcd1	99	74.603	ENSMFAG00000041324	-	99	74.603	Macaca_fascicularis
MGP_SPRETEiJ_G0029012	Ptcd1	99	74.459	ENSMMUG00000030408	-	99	74.459	Macaca_mulatta
MGP_SPRETEiJ_G0029012	Ptcd1	99	74.459	ENSMNEG00000043786	-	99	74.459	Macaca_nemestrina
MGP_SPRETEiJ_G0029012	Ptcd1	99	56.277	ENSMLEG00000031179	-	98	58.297	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0029012	Ptcd1	85	49.076	ENSMAMG00000007623	ptcd1	81	48.904	Mastacembelus_armatus
MGP_SPRETEiJ_G0029012	Ptcd1	89	48.397	ENSMZEG00005012722	ptcd1	85	47.436	Maylandia_zebra
MGP_SPRETEiJ_G0029012	Ptcd1	99	53.944	ENSMGAG00000004211	-	92	53.662	Meleagris_gallopavo
MGP_SPRETEiJ_G0029012	Ptcd1	99	75.287	ENSMICG00000017428	-	99	75.323	Microcebus_murinus
MGP_SPRETEiJ_G0029012	Ptcd1	87	46.798	ENSMMOG00000020243	ptcd1	91	46.634	Mola_mola
MGP_SPRETEiJ_G0029012	Ptcd1	99	58.051	ENSMODG00000001350	-	99	57.588	Monodelphis_domestica
MGP_SPRETEiJ_G0029012	Ptcd1	89	48.718	ENSMALG00000018442	ptcd1	84	47.709	Monopterus_albus
MGP_SPRETEiJ_G0029012	Ptcd1	100	97.842	MGP_CAROLIEiJ_G0028011	Ptcd1	100	97.842	Mus_caroli
MGP_SPRETEiJ_G0029012	Ptcd1	100	98.417	ENSMUSG00000029624	Ptcd1	100	98.417	Mus_musculus
MGP_SPRETEiJ_G0029012	Ptcd1	99	94.524	MGP_PahariEiJ_G0024580	Ptcd1	99	94.524	Mus_pahari
MGP_SPRETEiJ_G0029012	Ptcd1	99	77.809	ENSMPUG00000016518	-	99	77.952	Mustela_putorius_furo
MGP_SPRETEiJ_G0029012	Ptcd1	99	77.240	ENSMLUG00000010994	-	93	78.459	Myotis_lucifugus
MGP_SPRETEiJ_G0029012	Ptcd1	89	48.882	ENSNBRG00000010079	ptcd1	87	48.544	Neolamprologus_brichardi
MGP_SPRETEiJ_G0029012	Ptcd1	81	74.645	ENSNLEG00000011060	-	98	74.645	Nomascus_leucogenys
MGP_SPRETEiJ_G0029012	Ptcd1	98	60.606	ENSMEUG00000006930	-	99	60.345	Notamacropus_eugenii
MGP_SPRETEiJ_G0029012	Ptcd1	89	74.048	ENSOPRG00000013647	-	88	74.048	Ochotona_princeps
MGP_SPRETEiJ_G0029012	Ptcd1	87	47.411	ENSONIG00000003168	ptcd1	99	46.602	Oreochromis_niloticus
MGP_SPRETEiJ_G0029012	Ptcd1	81	56.272	ENSOANG00000007728	-	74	56.098	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0029012	Ptcd1	99	73.199	ENSOCUG00000010584	-	97	73.055	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0029012	Ptcd1	88	47.573	ENSORLG00000009275	ptcd1	87	47.411	Oryzias_latipes
MGP_SPRETEiJ_G0029012	Ptcd1	88	47.343	ENSORLG00020000988	ptcd1	87	46.474	Oryzias_latipes_hni
MGP_SPRETEiJ_G0029012	Ptcd1	88	47.097	ENSORLG00015010557	ptcd1	87	47.145	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0029012	Ptcd1	90	46.635	ENSOMEG00000020627	ptcd1	91	46.406	Oryzias_melastigma
MGP_SPRETEiJ_G0029012	Ptcd1	99	71.817	ENSOGAG00000010877	-	99	71.674	Otolemur_garnettii
MGP_SPRETEiJ_G0029012	Ptcd1	99	71.552	ENSOARG00000018676	-	99	71.264	Ovis_aries
MGP_SPRETEiJ_G0029012	Ptcd1	99	73.593	ENSPPAG00000036024	-	99	73.737	Pan_paniscus
MGP_SPRETEiJ_G0029012	Ptcd1	99	78.098	ENSPPRG00000003478	-	99	77.954	Panthera_pardus
MGP_SPRETEiJ_G0029012	Ptcd1	99	73.449	ENSPTRG00000019452	-	99	73.593	Pan_troglodytes
MGP_SPRETEiJ_G0029012	Ptcd1	99	74.603	ENSPANG00000016730	-	99	74.603	Papio_anubis
MGP_SPRETEiJ_G0029012	Ptcd1	85	53.667	ENSPKIG00000014215	ptcd1	86	53.589	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0029012	Ptcd1	85	58.333	ENSPSIG00000011184	-	100	58.500	Pelodiscus_sinensis
MGP_SPRETEiJ_G0029012	Ptcd1	74	42.115	ENSPMAG00000009667	ptcd1	100	42.115	Petromyzon_marinus
MGP_SPRETEiJ_G0029012	Ptcd1	86	65.696	ENSPCIG00000024778	-	89	62.805	Phascolarctos_cinereus
MGP_SPRETEiJ_G0029012	Ptcd1	91	45.807	ENSPFOG00000004458	ptcd1	87	44.632	Poecilia_formosa
MGP_SPRETEiJ_G0029012	Ptcd1	91	45.568	ENSPLAG00000011051	ptcd1	88	44.684	Poecilia_latipinna
MGP_SPRETEiJ_G0029012	Ptcd1	91	45.963	ENSPMEG00000020547	ptcd1	87	44.939	Poecilia_mexicana
MGP_SPRETEiJ_G0029012	Ptcd1	83	48.464	ENSPREG00000000059	ptcd1	83	47.395	Poecilia_reticulata
MGP_SPRETEiJ_G0029012	Ptcd1	93	75.734	ENSPPYG00000017377	-	98	75.734	Pongo_abelii
MGP_SPRETEiJ_G0029012	Ptcd1	80	72.512	ENSPCAG00000001852	-	87	72.512	Procavia_capensis
MGP_SPRETEiJ_G0029012	Ptcd1	99	75.571	ENSPCOG00000018596	-	99	75.606	Propithecus_coquereli
MGP_SPRETEiJ_G0029012	Ptcd1	67	87.000	ENSPVAG00000007529	-	73	87.000	Pteropus_vampyrus
MGP_SPRETEiJ_G0029012	Ptcd1	89	48.243	ENSPNYG00000019993	ptcd1	85	47.284	Pundamilia_nyererei
MGP_SPRETEiJ_G0029012	Ptcd1	93	49.554	ENSPNAG00000014931	ptcd1	98	48.633	Pygocentrus_nattereri
MGP_SPRETEiJ_G0029012	Ptcd1	100	88.201	ENSRNOG00000000987	Ptcd1	100	88.201	Rattus_norvegicus
MGP_SPRETEiJ_G0029012	Ptcd1	99	74.674	ENSRBIG00000043393	-	99	74.674	Rhinopithecus_bieti
MGP_SPRETEiJ_G0029012	Ptcd1	99	74.674	ENSRROG00000036420	-	99	74.674	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0029012	Ptcd1	99	74.170	ENSSBOG00000024114	-	99	74.026	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0029012	Ptcd1	99	55.074	ENSSHAG00000011376	-	99	59.939	Sarcophilus_harrisii
MGP_SPRETEiJ_G0029012	Ptcd1	88	53.651	ENSSFOG00015007909	ptcd1	84	53.651	Scleropages_formosus
MGP_SPRETEiJ_G0029012	Ptcd1	87	44.534	ENSSMAG00000000218	ptcd1	94	44.968	Scophthalmus_maximus
MGP_SPRETEiJ_G0029012	Ptcd1	95	45.455	ENSSDUG00000015671	ptcd1	94	45.455	Seriola_dumerili
MGP_SPRETEiJ_G0029012	Ptcd1	91	46.130	ENSSLDG00000014261	ptcd1	91	45.511	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0029012	Ptcd1	91	55.387	ENSSPUG00000003540	-	89	54.932	Sphenodon_punctatus
MGP_SPRETEiJ_G0029012	Ptcd1	91	46.330	ENSSPAG00000011049	ptcd1	87	45.776	Stegastes_partitus
MGP_SPRETEiJ_G0029012	Ptcd1	92	77.656	ENSSSCG00000007622	-	98	76.615	Sus_scrofa
MGP_SPRETEiJ_G0029012	Ptcd1	88	58.454	ENSTGUG00000007563	-	99	58.862	Taeniopygia_guttata
MGP_SPRETEiJ_G0029012	Ptcd1	88	45.617	ENSTRUG00000013471	ptcd1	83	45.617	Takifugu_rubripes
MGP_SPRETEiJ_G0029012	Ptcd1	92	45.329	ENSTNIG00000008271	ptcd1	93	45.329	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0029012	Ptcd1	99	74.465	ENSTBEG00000011021	-	99	74.322	Tupaia_belangeri
MGP_SPRETEiJ_G0029012	Ptcd1	99	74.856	ENSTTRG00000003006	-	99	74.713	Tursiops_truncatus
MGP_SPRETEiJ_G0029012	Ptcd1	99	78.094	ENSUAMG00000008049	-	99	77.809	Ursus_americanus
MGP_SPRETEiJ_G0029012	Ptcd1	99	77.345	ENSVVUG00000008836	-	99	77.056	Vulpes_vulpes
MGP_SPRETEiJ_G0029012	Ptcd1	94	50.610	ENSXETG00000009891	ptcd1	96	49.046	Xenopus_tropicalis
MGP_SPRETEiJ_G0029012	Ptcd1	91	45.710	ENSXMAG00000015540	ptcd1	87	45.866	Xiphophorus_maculatus