EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
MGP_SPRETEiJ_G0029013 (Gene tree)
Gene ID
-
Gene Symbol
Cpsf4
Alias
30kDa
Full Name
cleavage and polyadenylation specific factor 4
Gene Type
protein_coding
Species
Mus_spretus
Status
putative
Strand
Plus strand
Length
14713 bases
Position
chr5:146257455-146272167
Accession
1861602
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
MGP_SPRETEiJ_P0074964zf-CCCHPF00642.241.1e-2012
MGP_SPRETEiJ_P0074964zf-CCCHPF00642.241.1e-2022
MGP_SPRETEiJ_P0074959zf-CCCHPF00642.243.1e-2012
MGP_SPRETEiJ_P0074959zf-CCCHPF00642.243.1e-2022
MGP_SPRETEiJ_P0074962zf-CCCHPF00642.243.2e-2012
MGP_SPRETEiJ_P0074962zf-CCCHPF00642.243.2e-2022
MGP_SPRETEiJ_P0074961zf-CCCHPF00642.246e-2012
MGP_SPRETEiJ_P0074961zf-CCCHPF00642.246e-2022
MGP_SPRETEiJ_P0074960zf-CCCHPF00642.242.4e-1512
MGP_SPRETEiJ_P0074960zf-CCCHPF00642.242.4e-1522
MGP_SPRETEiJ_P0074960zf-CCHCPF00098.235.6e-0611
MGP_SPRETEiJ_P0074959zf-CCHCPF00098.236.7e-0611
MGP_SPRETEiJ_P0074962zf-CCHCPF00098.236.8e-0611
MGP_SPRETEiJ_P0074961zf-CCHCPF00098.237.6e-0611
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
MGP_SPRETEiJ_T0074965-2973--- (aa)--
MGP_SPRETEiJ_T0074964-838-MGP_SPRETEiJ_P0074964207 (aa)--
MGP_SPRETEiJ_T0074961-1754-MGP_SPRETEiJ_P0074961269 (aa)-UPI0002384807
MGP_SPRETEiJ_T0074960-1604-MGP_SPRETEiJ_P0074960211 (aa)--
MGP_SPRETEiJ_T0074963-1212-MGP_SPRETEiJ_P007496362 (aa)-UPI0002A47811
MGP_SPRETEiJ_T0074962-1386-MGP_SPRETEiJ_P0074962244 (aa)-UPI0002741D4D
MGP_SPRETEiJ_T0074959-1711-MGP_SPRETEiJ_P0074959243 (aa)-UPI0003315B4B
Gene Model
Click here to download MGP_SPRETEiJ_G0029013's gene model file
Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0029013's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
MGP_SPRETEiJ_G0029013Cpsf45765.254MGP_SPRETEiJ_G0018215-7765.254
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSG00000160917CPSF4100100.000Homo_sapiens
MGP_SPRETEiJ_G0029013Cpsf46774.176ENSAPOG00000004921cpsf410074.176Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSAMEG00000006252CPSF410099.628Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0029013Cpsf410087.705ENSACIG00000009248cpsf410087.705Amphilophus_citrinellus
MGP_SPRETEiJ_G0029013Cpsf410084.815ENSAOCG00000019616cpsf410084.815Amphiprion_ocellaris
MGP_SPRETEiJ_G0029013Cpsf410084.815ENSAPEG00000011679cpsf410084.815Amphiprion_percula
MGP_SPRETEiJ_G0029013Cpsf410085.200ENSATEG00000007010cpsf410085.425Anabas_testudineus
MGP_SPRETEiJ_G0029013Cpsf410093.309ENSACAG00000012941CPSF48993.309Anolis_carolinensis
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSANAG00000021360CPSF410099.628Aotus_nancymaae
MGP_SPRETEiJ_G0029013Cpsf410084.074ENSACLG00000010374cpsf410084.074Astatotilapia_calliptera
MGP_SPRETEiJ_G0029013Cpsf410085.782ENSAMXG00000031647cpsf410086.256Astyanax_mexicanus
MGP_SPRETEiJ_G0029013Cpsf410098.765ENSBTAG00000002090CPSF410098.765Bos_taurus
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSCJAG00000015826CPSF410099.628Callithrix_jacchus
MGP_SPRETEiJ_G0029013Cpsf410099.257ENSCAFG00000015036CPSF410099.257Canis_familiaris
MGP_SPRETEiJ_G0029013Cpsf410092.937ENSCAFG00020014462CPSF410092.937Canis_lupus_dingo
MGP_SPRETEiJ_G0029013Cpsf410098.885ENSCHIG00000014313CPSF410098.885Capra_hircus
MGP_SPRETEiJ_G0029013Cpsf410098.770ENSTSYG00000005712-10098.770Carlito_syrichta
MGP_SPRETEiJ_G0029013Cpsf410090.204ENSTSYG00000014604-10090.204Carlito_syrichta
MGP_SPRETEiJ_G0029013Cpsf48892.130ENSTSYG00000008195-9991.556Carlito_syrichta
MGP_SPRETEiJ_G0029013Cpsf48199.541ENSCAPG00000013881CPSF48799.541Cavia_aperea
MGP_SPRETEiJ_G0029013Cpsf410099.590ENSCPOG00000001783CPSF410099.590Cavia_porcellus
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSCCAG00000028291CPSF410099.628Cebus_capucinus
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSCATG00000038440CPSF410099.628Cercocebus_atys
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSCLAG00000007050CPSF410099.628Chinchilla_lanigera
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSCSAG00000017795CPSF410099.628Chlorocebus_sabaeus
MGP_SPRETEiJ_G0029013Cpsf46484.962ENSCPBG00000010269-10080.723Chrysemys_picta_bellii
MGP_SPRETEiJ_G0029013Cpsf48095.370ENSCPBG00000020869CPSF410095.370Chrysemys_picta_bellii
MGP_SPRETEiJ_G0029013Cpsf49755.939ENSCING00000021080-9755.939Ciona_intestinalis
MGP_SPRETEiJ_G0029013Cpsf49654.064ENSCSAVG00000011469-9753.025Ciona_savignyi
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSCANG00000019384CPSF410099.628Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0029013Cpsf410099.590ENSCGRG00001024184Cpsf410099.590Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSCGRG00000013892Cpsf410099.628Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0029013Cpsf410084.360ENSCSEG00000019055cpsf410084.360Cynoglossus_semilaevis
MGP_SPRETEiJ_G0029013Cpsf410083.333ENSCVAG00000016528cpsf410083.333Cyprinodon_variegatus
MGP_SPRETEiJ_G0029013Cpsf410085.240ENSDARG00000020217cpsf410085.240Danio_rerio
MGP_SPRETEiJ_G0029013Cpsf410099.257ENSDNOG00000006344CPSF410099.257Dasypus_novemcinctus
MGP_SPRETEiJ_G0029013Cpsf48199.078ENSDORG00000000742Cpsf410099.078Dipodomys_ordii
MGP_SPRETEiJ_G0029013Cpsf410054.795FBgn0015621Clp9954.110Drosophila_melanogaster
MGP_SPRETEiJ_G0029013Cpsf477100.000ENSETEG00000002608CPSF470100.000Echinops_telfairi
MGP_SPRETEiJ_G0029013Cpsf49971.774ENSEBUG00000012552cpsf49870.445Eptatretus_burgeri
MGP_SPRETEiJ_G0029013Cpsf410099.590ENSEASG00005002487CPSF410099.590Equus_asinus_asinus
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSECAG00000007525CPSF410099.628Equus_caballus
MGP_SPRETEiJ_G0029013Cpsf468100.000ENSEEUG00000002158CPSF473100.000Erinaceus_europaeus
MGP_SPRETEiJ_G0029013Cpsf410082.847ENSELUG00000011481cpsf410082.847Esox_lucius
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSFCAG00000015070CPSF410099.628Felis_catus
MGP_SPRETEiJ_G0029013Cpsf46856.977ENSFALG00000012906-10056.977Ficedula_albicollis
MGP_SPRETEiJ_G0029013Cpsf410095.062ENSFALG00000013799CPSF410095.062Ficedula_albicollis
MGP_SPRETEiJ_G0029013Cpsf49098.765ENSFDAG00000014092CPSF410098.765Fukomys_damarensis
MGP_SPRETEiJ_G0029013Cpsf410082.963ENSFHEG00000010880cpsf410082.963Fundulus_heteroclitus
MGP_SPRETEiJ_G0029013Cpsf410081.081ENSGMOG00000002330cpsf410080.233Gadus_morhua
MGP_SPRETEiJ_G0029013Cpsf49939.888ENSGALG00000004441-9838.764Gallus_gallus
MGP_SPRETEiJ_G0029013Cpsf410095.062ENSGALG00000004714CPSF410095.062Gallus_gallus
MGP_SPRETEiJ_G0029013Cpsf410082.593ENSGAFG00000010580cpsf410082.593Gambusia_affinis
MGP_SPRETEiJ_G0029013Cpsf410081.496ENSGACG00000007792cpsf410081.890Gasterosteus_aculeatus
MGP_SPRETEiJ_G0029013Cpsf410095.539ENSGAGG00000021835CPSF410095.539Gopherus_agassizii
MGP_SPRETEiJ_G0029013Cpsf47576.923ENSGAGG00000020579-9281.212Gopherus_agassizii
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSGGOG00000015131CPSF410099.628Gorilla_gorilla
MGP_SPRETEiJ_G0029013Cpsf410084.074ENSHBUG00000013699cpsf410084.074Haplochromis_burtoni
MGP_SPRETEiJ_G0029013Cpsf410099.052ENSHGLG00000017150CPSF410099.052Heterocephalus_glaber_female
MGP_SPRETEiJ_G0029013Cpsf410070.616ENSHGLG00100017302-10068.720Heterocephalus_glaber_male
MGP_SPRETEiJ_G0029013Cpsf48795.763ENSHGLG00100009215-10096.591Heterocephalus_glaber_male
MGP_SPRETEiJ_G0029013Cpsf410080.741ENSHCOG00000004397cpsf410080.741Hippocampus_comes
MGP_SPRETEiJ_G0029013Cpsf410084.133ENSIPUG00000017147cpsf410085.294Ictalurus_punctatus
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSSTOG00000001688CPSF410099.628Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSJJAG00000019426Cpsf410099.628Jaculus_jaculus
MGP_SPRETEiJ_G0029013Cpsf410081.852ENSKMAG00000015642cpsf410081.852Kryptolebias_marmoratus
MGP_SPRETEiJ_G0029013Cpsf410065.447ENSLACG00000018470-10064.082Latimeria_chalumnae
MGP_SPRETEiJ_G0029013Cpsf410088.889ENSLACG00000010938CPSF410088.889Latimeria_chalumnae
MGP_SPRETEiJ_G0029013Cpsf410089.591ENSLOCG00000004814cpsf410089.591Lepisosteus_oculatus
MGP_SPRETEiJ_G0029013Cpsf410099.257ENSLAFG00000000159CPSF410099.257Loxodonta_africana
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSMFAG00000001462CPSF410099.628Macaca_fascicularis
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSMMUG00000019191CPSF410099.628Macaca_mulatta
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSMNEG00000032306CPSF410099.628Macaca_nemestrina
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSMLEG00000034721CPSF410099.628Mandrillus_leucophaeus
MGP_SPRETEiJ_G0029013Cpsf410084.074ENSMAMG00000006244cpsf410084.074Mastacembelus_armatus
MGP_SPRETEiJ_G0029013Cpsf410084.074ENSMZEG00005007515cpsf410084.074Maylandia_zebra
MGP_SPRETEiJ_G0029013Cpsf48694.737ENSMGAG00000004235CPSF410094.737Meleagris_gallopavo
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSMAUG00000021253Cpsf410099.628Mesocricetus_auratus
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSMICG00000017429CPSF410099.628Microcebus_murinus
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSMOCG00000014901Cpsf410099.628Microtus_ochrogaster
MGP_SPRETEiJ_G0029013Cpsf410084.834ENSMMOG00000001813cpsf410084.834Mola_mola
MGP_SPRETEiJ_G0029013Cpsf410097.398ENSMODG00000001367CPSF410097.398Monodelphis_domestica
MGP_SPRETEiJ_G0029013Cpsf410082.963ENSMALG00000012611cpsf410082.963Monopterus_albus
MGP_SPRETEiJ_G0029013Cpsf410099.628MGP_CAROLIEiJ_G0028012Cpsf410099.628Mus_caroli
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSMUSG00000029625Cpsf410099.628Mus_musculus
MGP_SPRETEiJ_G0029013Cpsf410099.628MGP_PahariEiJ_G0024581Cpsf410099.628Mus_pahari
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSMPUG00000016508CPSF410099.628Mustela_putorius_furo
MGP_SPRETEiJ_G0029013Cpsf48699.043ENSMLUG00000010980CPSF410099.043Myotis_lucifugus
MGP_SPRETEiJ_G0029013Cpsf410099.257ENSNGAG00000001567Cpsf410099.257Nannospalax_galili
MGP_SPRETEiJ_G0029013Cpsf49183.740ENSNBRG00000003943cpsf49883.740Neolamprologus_brichardi
MGP_SPRETEiJ_G0029013Cpsf410099.590ENSNLEG00000011074CPSF410099.590Nomascus_leucogenys
MGP_SPRETEiJ_G0029013Cpsf410097.398ENSMEUG00000006955CPSF410097.398Notamacropus_eugenii
MGP_SPRETEiJ_G0029013Cpsf410099.257ENSOPRG00000013663CPSF410099.257Ochotona_princeps
MGP_SPRETEiJ_G0029013Cpsf410074.725ENSODEG00000009779-10074.725Octodon_degus
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSODEG00000011181-10099.628Octodon_degus
MGP_SPRETEiJ_G0029013Cpsf49885.000ENSODEG00000018283-9185.000Octodon_degus
MGP_SPRETEiJ_G0029013Cpsf410084.074ENSONIG00000008495cpsf410084.074Oreochromis_niloticus
MGP_SPRETEiJ_G0029013Cpsf410054.676ENSOANG00000009568-10052.878Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0029013Cpsf48795.745ENSOANG00000007729CPSF410095.745Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0029013Cpsf410099.257ENSOCUG00000002437CPSF47099.257Oryctolagus_cuniculus
MGP_SPRETEiJ_G0029013Cpsf410083.271ENSORLG00000022798cpsf410083.271Oryzias_latipes
MGP_SPRETEiJ_G0029013Cpsf410083.271ENSORLG00020008548cpsf410083.271Oryzias_latipes_hni
MGP_SPRETEiJ_G0029013Cpsf410082.900ENSORLG00015019575cpsf410082.900Oryzias_latipes_hsok
MGP_SPRETEiJ_G0029013Cpsf410083.886ENSOMEG00000005176cpsf410083.886Oryzias_melastigma
MGP_SPRETEiJ_G0029013Cpsf4100100.000ENSOGAG00000010884CPSF4100100.000Otolemur_garnettii
MGP_SPRETEiJ_G0029013Cpsf410087.912ENSOARG00000018668CPSF410087.546Ovis_aries
MGP_SPRETEiJ_G0029013Cpsf410099.257ENSPPAG00000043355CPSF410099.257Pan_paniscus
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSPPRG00000003134CPSF410099.628Panthera_pardus
MGP_SPRETEiJ_G0029013Cpsf49099.587ENSPTIG00000005604CPSF49099.587Panthera_tigris_altaica
MGP_SPRETEiJ_G0029013Cpsf410099.257ENSPTRG00000019453CPSF410099.257Pan_troglodytes
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSPANG00000023123CPSF410099.628Papio_anubis
MGP_SPRETEiJ_G0029013Cpsf410083.942ENSPKIG00000014278cpsf410083.942Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0029013Cpsf47966.321ENSPSIG00000018198-10066.321Pelodiscus_sinensis
MGP_SPRETEiJ_G0029013Cpsf48094.907ENSPSIG00000011229CPSF410094.907Pelodiscus_sinensis
MGP_SPRETEiJ_G0029013Cpsf410081.148ENSPMGG00000017735cpsf410078.862Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSPEMG00000004508Cpsf410099.628Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0029013Cpsf410097.398ENSPCIG00000024776CPSF410097.398Phascolarctos_cinereus
MGP_SPRETEiJ_G0029013Cpsf410082.593ENSPFOG00000014912cpsf410082.593Poecilia_formosa
MGP_SPRETEiJ_G0029013Cpsf410079.675ENSPLAG00000009599cpsf410078.862Poecilia_latipinna
MGP_SPRETEiJ_G0029013Cpsf410082.593ENSPMEG00000009790cpsf410082.593Poecilia_mexicana
MGP_SPRETEiJ_G0029013Cpsf410081.852ENSPREG00000018166cpsf410079.554Poecilia_reticulata
MGP_SPRETEiJ_G0029013Cpsf48798.718ENSPPYG00000017378CPSF410098.718Pongo_abelii
MGP_SPRETEiJ_G0029013Cpsf410098.513ENSPCAG00000001892CPSF410098.513Procavia_capensis
MGP_SPRETEiJ_G0029013Cpsf410099.257ENSPCOG00000012771CPSF410099.257Propithecus_coquereli
MGP_SPRETEiJ_G0029013Cpsf410092.937ENSPVAG00000007531CPSF410092.937Pteropus_vampyrus
MGP_SPRETEiJ_G0029013Cpsf410084.074ENSPNYG00000018559cpsf410084.074Pundamilia_nyererei
MGP_SPRETEiJ_G0029013Cpsf410086.347ENSPNAG00000003736cpsf410087.085Pygocentrus_nattereri
MGP_SPRETEiJ_G0029013Cpsf410099.588ENSRNOG00000000985Cpsf410099.588Rattus_norvegicus
MGP_SPRETEiJ_G0029013Cpsf48799.573ENSRBIG00000033886CPSF410099.573Rhinopithecus_bieti
MGP_SPRETEiJ_G0029013Cpsf410099.590ENSRROG00000040431CPSF410099.590Rhinopithecus_roxellana
MGP_SPRETEiJ_G0029013Cpsf410099.628ENSSBOG00000020493CPSF410099.628Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0029013Cpsf410097.398ENSSHAG00000011533CPSF410097.398Sarcophilus_harrisii
MGP_SPRETEiJ_G0029013Cpsf410085.145ENSSFOG00015007883cpsf410085.870Scleropages_formosus
MGP_SPRETEiJ_G0029013Cpsf410086.531ENSSMAG00000006374cpsf410086.531Scophthalmus_maximus
MGP_SPRETEiJ_G0029013Cpsf410083.333ENSSDUG00000018887cpsf410083.333Seriola_dumerili
MGP_SPRETEiJ_G0029013Cpsf410083.333ENSSLDG00000019078cpsf410083.333Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0029013Cpsf487100.000ENSSARG00000012416CPSF4100100.000Sorex_araneus
MGP_SPRETEiJ_G0029013Cpsf49564.831ENSSPUG00000014803-9764.407Sphenodon_punctatus
MGP_SPRETEiJ_G0029013Cpsf410094.052ENSSPUG00000003549CPSF410094.052Sphenodon_punctatus
MGP_SPRETEiJ_G0029013Cpsf410087.295ENSSPAG00000006174cpsf410087.295Stegastes_partitus
MGP_SPRETEiJ_G0029013Cpsf4100100.000ENSSSCG00000026896CPSF4100100.000Sus_scrofa
MGP_SPRETEiJ_G0029013Cpsf410093.878ENSTGUG00000007552CPSF410093.878Taeniopygia_guttata
MGP_SPRETEiJ_G0029013Cpsf410080.952ENSTRUG00000024220cpsf410080.952Takifugu_rubripes
MGP_SPRETEiJ_G0029013Cpsf410080.000ENSTNIG00000006265cpsf410081.481Tetraodon_nigroviridis
MGP_SPRETEiJ_G0029013Cpsf48790.171ENSTBEG00000011406CPSF410090.171Tupaia_belangeri
MGP_SPRETEiJ_G0029013Cpsf410078.810ENSTTRG00000003007CPSF410078.810Tursiops_truncatus
MGP_SPRETEiJ_G0029013Cpsf49199.548ENSUAMG00000008051CPSF48599.548Ursus_americanus
MGP_SPRETEiJ_G0029013Cpsf410099.588ENSUMAG00000009474CPSF410099.588Ursus_maritimus
MGP_SPRETEiJ_G0029013Cpsf410099.180ENSVVUG00000008824CPSF410099.180Vulpes_vulpes
MGP_SPRETEiJ_G0029013Cpsf49961.278ENSXETG00000004641cpsf4l9960.821Xenopus_tropicalis
MGP_SPRETEiJ_G0029013Cpsf410088.172ENSXETG00000009892cpsf410088.172Xenopus_tropicalis
MGP_SPRETEiJ_G0029013Cpsf410083.886ENSXCOG00000016040cpsf410083.886Xiphophorus_couchianus
MGP_SPRETEiJ_G0029013Cpsf410082.593ENSXMAG00000024670cpsf410082.593Xiphophorus_maculatus

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