EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0029029 (Gene tree)
Gene ID: -
Gene Symbol: Gtf3a
Alias: 2010015D03Rik|2610111I01Rik|5330403M05Rik
Full Name: general transcription factor III A
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 6971 bases
Position: chr5:147810726-147817696
Accession: 1913846
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0075028	zf-C2H2	PF00096.26	1.1e-33	1	5
MGP_SPRETEiJ_P0075028	zf-C2H2	PF00096.26	1.1e-33	2	5
MGP_SPRETEiJ_P0075028	zf-C2H2	PF00096.26	1.1e-33	3	5
MGP_SPRETEiJ_P0075028	zf-C2H2	PF00096.26	1.1e-33	4	5
MGP_SPRETEiJ_P0075028	zf-C2H2	PF00096.26	1.1e-33	5	5
MGP_SPRETEiJ_P0075026	zf-C2H2	PF00096.26	2.4e-33	1	5
MGP_SPRETEiJ_P0075026	zf-C2H2	PF00096.26	2.4e-33	2	5
MGP_SPRETEiJ_P0075026	zf-C2H2	PF00096.26	2.4e-33	3	5
MGP_SPRETEiJ_P0075026	zf-C2H2	PF00096.26	2.4e-33	4	5
MGP_SPRETEiJ_P0075026	zf-C2H2	PF00096.26	2.4e-33	5	5
MGP_SPRETEiJ_P0075028	zf-met	PF12874.7	0.00039	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0075029	-	1669	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0075028	-	1410	-	MGP_SPRETEiJ_P0075028	341 (aa)	-	-
MGP_SPRETEiJ_T0075027	-	1951	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0075026	-	1298	-	MGP_SPRETEiJ_P0075026	364 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0029029's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0029029's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0029029	Gtf3a	79	34.657	MGP_SPRETEiJ_G0031614	-	83	35.417
MGP_SPRETEiJ_G0029029	Gtf3a	87	37.190	MGP_SPRETEiJ_G0024947	Wt1	50	34.286
MGP_SPRETEiJ_G0029029	Gtf3a	78	38.400	MGP_SPRETEiJ_G0029467	Prdm5	63	34.397
MGP_SPRETEiJ_G0029029	Gtf3a	79	34.657	MGP_SPRETEiJ_G0031613	-	83	35.417

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0029029	Gtf3a	99	78.788	ENSAMEG00000015824	GTF3A	99	78.788	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0029029	Gtf3a	97	77.711	ENSBTAG00000012600	GTF3A	98	77.684	Bos_taurus
MGP_SPRETEiJ_G0029029	Gtf3a	97	79.279	ENSCAFG00000006794	GTF3A	93	81.765	Canis_familiaris
MGP_SPRETEiJ_G0029029	Gtf3a	97	78.409	ENSCHIG00000021040	-	83	78.409	Capra_hircus
MGP_SPRETEiJ_G0029029	Gtf3a	97	77.841	ENSCHIG00000010341	-	98	77.841	Capra_hircus
MGP_SPRETEiJ_G0029029	Gtf3a	92	76.106	ENSTSYG00000004206	GTF3A	99	76.106	Carlito_syrichta
MGP_SPRETEiJ_G0029029	Gtf3a	84	82.470	ENSCAPG00000015862	GTF3A	97	82.470	Cavia_aperea
MGP_SPRETEiJ_G0029029	Gtf3a	94	80.805	ENSCPOG00000010143	GTF3A	98	81.734	Cavia_porcellus
MGP_SPRETEiJ_G0029029	Gtf3a	95	78.899	ENSCLAG00000003912	GTF3A	96	82.803	Chinchilla_lanigera
MGP_SPRETEiJ_G0029029	Gtf3a	93	81.050	ENSDNOG00000037405	-	86	77.534	Dasypus_novemcinctus
MGP_SPRETEiJ_G0029029	Gtf3a	97	74.129	ENSETEG00000003225	GTF3A	71	75.829	Echinops_telfairi
MGP_SPRETEiJ_G0029029	Gtf3a	97	69.880	ENSEASG00005013216	-	86	71.914	Equus_asinus_asinus
MGP_SPRETEiJ_G0029029	Gtf3a	99	78.237	ENSEASG00005022495	-	81	78.237	Equus_asinus_asinus
MGP_SPRETEiJ_G0029029	Gtf3a	91	75.455	ENSECAG00000024825	-	77	74.780	Equus_caballus
MGP_SPRETEiJ_G0029029	Gtf3a	99	79.063	ENSECAG00000014803	GTF3A	86	78.188	Equus_caballus
MGP_SPRETEiJ_G0029029	Gtf3a	99	75.549	ENSEEUG00000004307	GTF3A	89	76.648	Erinaceus_europaeus
MGP_SPRETEiJ_G0029029	Gtf3a	99	79.339	ENSFCAG00000006982	GTF3A	84	79.339	Felis_catus
MGP_SPRETEiJ_G0029029	Gtf3a	95	80.615	ENSFDAG00000016841	GTF3A	100	80.923	Fukomys_damarensis
MGP_SPRETEiJ_G0029029	Gtf3a	91	82.051	ENSHGLG00000004173	GTF3A	97	82.692	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0029029	Gtf3a	91	82.051	ENSHGLG00100011561	GTF3A	97	82.692	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0029029	Gtf3a	91	82.428	ENSSTOG00000013853	GTF3A	100	83.387	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0029029	Gtf3a	90	76.375	ENSJJAG00000011501	Gtf3a	99	76.375	Jaculus_jaculus
MGP_SPRETEiJ_G0029029	Gtf3a	99	69.730	ENSLAFG00000027315	GTF3A	99	69.730	Loxodonta_africana
MGP_SPRETEiJ_G0029029	Gtf3a	99	84.488	ENSMAUG00000016253	Gtf3a	96	85.593	Mesocricetus_auratus
MGP_SPRETEiJ_G0029029	Gtf3a	99	76.923	ENSMICG00000014763	GTF3A	98	77.747	Microcebus_murinus
MGP_SPRETEiJ_G0029029	Gtf3a	100	98.077	MGP_CAROLIEiJ_G0028031	Gtf3a	100	98.077	Mus_caroli
MGP_SPRETEiJ_G0029029	Gtf3a	100	99.176	ENSMUSG00000016503	Gtf3a	100	99.176	Mus_musculus
MGP_SPRETEiJ_G0029029	Gtf3a	100	96.438	MGP_PahariEiJ_G0024597	Gtf3a	100	96.438	Mus_pahari
MGP_SPRETEiJ_G0029029	Gtf3a	99	78.237	ENSMPUG00000005835	GTF3A	98	78.237	Mustela_putorius_furo
MGP_SPRETEiJ_G0029029	Gtf3a	91	83.939	ENSMLUG00000002158	GTF3A	99	83.939	Myotis_lucifugus
MGP_SPRETEiJ_G0029029	Gtf3a	99	78.453	ENSNLEG00000000331	GTF3A	99	78.453	Nomascus_leucogenys
MGP_SPRETEiJ_G0029029	Gtf3a	90	54.434	ENSMEUG00000010089	GTF3A	99	52.770	Notamacropus_eugenii
MGP_SPRETEiJ_G0029029	Gtf3a	92	74.030	ENSOPRG00000000854	-	83	74.030	Ochotona_princeps
MGP_SPRETEiJ_G0029029	Gtf3a	97	78.443	ENSODEG00000006725	GTF3A	80	81.232	Octodon_degus
MGP_SPRETEiJ_G0029029	Gtf3a	99	76.860	ENSOCUG00000011713	GTF3A	83	76.860	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0029029	Gtf3a	99	76.986	ENSOGAG00000014589	GTF3A	99	77.534	Otolemur_garnettii
MGP_SPRETEiJ_G0029029	Gtf3a	97	73.580	ENSOARG00000012551	GTF3A	96	73.580	Ovis_aries
MGP_SPRETEiJ_G0029029	Gtf3a	99	79.339	ENSPPRG00000002368	GTF3A	99	79.339	Panthera_pardus
MGP_SPRETEiJ_G0029029	Gtf3a	90	78.188	ENSPTIG00000018958	GTF3A	81	78.188	Panthera_tigris_altaica
MGP_SPRETEiJ_G0029029	Gtf3a	90	51.737	ENSPSIG00000011722	GTF3A	98	51.737	Pelodiscus_sinensis
MGP_SPRETEiJ_G0029029	Gtf3a	98	77.778	ENSPPYG00000005235	GTF3A	99	77.778	Pongo_abelii
MGP_SPRETEiJ_G0029029	Gtf3a	93	79.825	ENSPCOG00000016742	GTF3A	77	80.702	Propithecus_coquereli
MGP_SPRETEiJ_G0029029	Gtf3a	99	76.111	ENSPVAG00000012837	GTF3A	85	76.111	Pteropus_vampyrus
MGP_SPRETEiJ_G0029029	Gtf3a	99	72.099	ENSRROG00000043264	GTF3A	99	72.099	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0029029	Gtf3a	90	73.089	ENSSHAG00000016965	GTF3A	97	70.930	Sarcophilus_harrisii
MGP_SPRETEiJ_G0029029	Gtf3a	91	71.061	ENSSARG00000010692	GTF3A	86	71.704	Sorex_araneus
MGP_SPRETEiJ_G0029029	Gtf3a	93	67.160	ENSSPUG00000005307	GTF3A	96	64.365	Sphenodon_punctatus
MGP_SPRETEiJ_G0029029	Gtf3a	77	46.617	ENSTRUG00000005241	gtf3ab	86	45.734	Takifugu_rubripes
MGP_SPRETEiJ_G0029029	Gtf3a	80	85.306	ENSTBEG00000012075	GTF3A	61	84.375	Tupaia_belangeri
MGP_SPRETEiJ_G0029029	Gtf3a	99	71.823	ENSTTRG00000008538	GTF3A	87	71.823	Tursiops_truncatus
MGP_SPRETEiJ_G0029029	Gtf3a	99	78.512	ENSUAMG00000019189	GTF3A	99	78.512	Ursus_americanus
MGP_SPRETEiJ_G0029029	Gtf3a	88	82.724	ENSUMAG00000016941	GTF3A	100	82.724	Ursus_maritimus
MGP_SPRETEiJ_G0029029	Gtf3a	78	85.654	ENSVPAG00000004995	GTF3A	99	79.798	Vicugna_pacos
MGP_SPRETEiJ_G0029029	Gtf3a	99	77.198	ENSVVUG00000009197	GTF3A	99	77.198	Vulpes_vulpes