EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0029032 (Gene tree)
Gene ID: -
Gene Symbol: Polr1d
Alias: 1110003G10Rik|16kDa|Rpo1-3|mRPA16
Full Name: polymerase (RNA) I polypeptide D
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 35034 bases
Position: chr5:147959931-147994964
Accession: 108403
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0075038	RNA_pol_L_2	PF13656.6	4.3e-27	1	1
MGP_SPRETEiJ_P0075038	RNA_pol_L	PF01193.24	3e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0075038	-	1195	-	MGP_SPRETEiJ_P0075038	133 (aa)	-	-
MGP_SPRETEiJ_T0075039	-	1138	-	MGP_SPRETEiJ_P0075039	126 (aa)	-	-
MGP_SPRETEiJ_T0075041	-	1350	-	MGP_SPRETEiJ_P0075041	42 (aa)	-	-
MGP_SPRETEiJ_T0075040	-	1167	-	MGP_SPRETEiJ_P0075040	33 (aa)	-	UPI00064548A9
MGP_SPRETEiJ_T0075043	-	880	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0075042	-	363	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0029032's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0029032's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0029032	Polr1d	77	33.010	MGP_SPRETEiJ_G0028853	Polr2j	85	33.010

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0029032	Polr1d	100	90.977	ENSG00000186184	POLR1D	100	90.977	Homo_sapiens
MGP_SPRETEiJ_G0029032	Polr1d	76	67.327	ENSAPOG00000021882	polr1d	94	68.000	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0029032	Polr1d	94	91.200	ENSAMEG00000019095	POLR1D	100	91.200	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0029032	Polr1d	75	73.000	ENSACIG00000013328	polr1d	87	73.000	Amphilophus_citrinellus
MGP_SPRETEiJ_G0029032	Polr1d	84	65.179	ENSAOCG00000018500	polr1d	98	65.179	Amphiprion_ocellaris
MGP_SPRETEiJ_G0029032	Polr1d	84	64.286	ENSAPEG00000009489	polr1d	98	64.286	Amphiprion_percula
MGP_SPRETEiJ_G0029032	Polr1d	84	63.393	ENSATEG00000019322	polr1d	98	63.393	Anabas_testudineus
MGP_SPRETEiJ_G0029032	Polr1d	83	63.063	ENSACAG00000015753	POLR1D	96	63.063	Anolis_carolinensis
MGP_SPRETEiJ_G0029032	Polr1d	100	90.977	ENSANAG00000024486	POLR1D	100	90.977	Aotus_nancymaae
MGP_SPRETEiJ_G0029032	Polr1d	84	66.964	ENSACLG00000023805	polr1d	98	66.964	Astatotilapia_calliptera
MGP_SPRETEiJ_G0029032	Polr1d	82	66.055	ENSAMXG00000036118	polr1d	95	66.055	Astyanax_mexicanus
MGP_SPRETEiJ_G0029032	Polr1d	100	87.970	ENSBTAG00000033252	-	100	87.970	Bos_taurus
MGP_SPRETEiJ_G0029032	Polr1d	100	87.970	ENSBTAG00000008642	POLR1D	100	87.970	Bos_taurus
MGP_SPRETEiJ_G0029032	Polr1d	62	37.805	WBGene00010230	rpac-19	57	37.805	Caenorhabditis_elegans
MGP_SPRETEiJ_G0029032	Polr1d	100	90.977	ENSCJAG00000044669	POLR1D	100	90.977	Callithrix_jacchus
MGP_SPRETEiJ_G0029032	Polr1d	100	90.977	ENSCAFG00000006755	POLR1D	100	90.977	Canis_familiaris
MGP_SPRETEiJ_G0029032	Polr1d	100	88.722	ENSCHIG00000021910	POLR1D	100	88.722	Capra_hircus
MGP_SPRETEiJ_G0029032	Polr1d	93	87.097	ENSTSYG00000026817	-	93	87.097	Carlito_syrichta
MGP_SPRETEiJ_G0029032	Polr1d	99	74.627	ENSTSYG00000034852	-	98	75.630	Carlito_syrichta
MGP_SPRETEiJ_G0029032	Polr1d	97	52.713	ENSCAPG00000006058	-	100	52.713	Cavia_aperea
MGP_SPRETEiJ_G0029032	Polr1d	97	53.488	ENSCPOG00000030450	-	100	53.488	Cavia_porcellus
MGP_SPRETEiJ_G0029032	Polr1d	100	89.474	ENSCCAG00000021349	-	100	89.474	Cebus_capucinus
MGP_SPRETEiJ_G0029032	Polr1d	100	74.436	ENSCCAG00000020191	-	100	74.436	Cebus_capucinus
MGP_SPRETEiJ_G0029032	Polr1d	100	78.947	ENSCATG00000022900	-	100	78.947	Cercocebus_atys
MGP_SPRETEiJ_G0029032	Polr1d	100	89.474	ENSCATG00000030710	-	100	89.474	Cercocebus_atys
MGP_SPRETEiJ_G0029032	Polr1d	93	90.323	ENSCLAG00000017623	POLR1D	100	90.323	Chinchilla_lanigera
MGP_SPRETEiJ_G0029032	Polr1d	73	75.258	ENSCPBG00000004719	POLR1D	96	75.258	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0029032	Polr1d	100	86.466	ENSCANG00000037694	-	100	86.466	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0029032	Polr1d	100	89.474	ENSCANG00000028632	-	100	89.474	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0029032	Polr1d	100	90.977	ENSCGRG00001021251	Polr1d	100	90.977	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0029032	Polr1d	100	90.977	ENSCGRG00000011639	Polr1d	100	90.977	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0029032	Polr1d	85	63.717	ENSCSEG00000018268	polr1d	97	63.717	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0029032	Polr1d	78	69.231	ENSCVAG00000018527	polr1d	91	69.231	Cyprinodon_variegatus
MGP_SPRETEiJ_G0029032	Polr1d	83	63.636	ENSDARG00000037570	polr1d	98	63.636	Danio_rerio
MGP_SPRETEiJ_G0029032	Polr1d	100	86.567	ENSDNOG00000046247	-	100	86.567	Dasypus_novemcinctus
MGP_SPRETEiJ_G0029032	Polr1d	100	88.722	ENSDNOG00000043676	-	100	88.722	Dasypus_novemcinctus
MGP_SPRETEiJ_G0029032	Polr1d	100	90.226	ENSDORG00000029155	Polr1d	100	90.226	Dipodomys_ordii
MGP_SPRETEiJ_G0029032	Polr1d	65	46.512	FBgn0086447	l(2)37Cg	80	47.059	Drosophila_melanogaster
MGP_SPRETEiJ_G0029032	Polr1d	93	84.677	ENSETEG00000012797	POLR1D	100	84.677	Echinops_telfairi
MGP_SPRETEiJ_G0029032	Polr1d	65	70.115	ENSEBUG00000011748	polr1d	61	70.115	Eptatretus_burgeri
MGP_SPRETEiJ_G0029032	Polr1d	97	90.698	ENSEASG00005022487	POLR1D	100	90.698	Equus_asinus_asinus
MGP_SPRETEiJ_G0029032	Polr1d	93	90.323	ENSEEUG00000013144	POLR1D	100	90.323	Erinaceus_europaeus
MGP_SPRETEiJ_G0029032	Polr1d	80	66.038	ENSELUG00000005105	rpac2	93	66.038	Esox_lucius
MGP_SPRETEiJ_G0029032	Polr1d	100	90.977	ENSFCAG00000030162	POLR1D	100	90.977	Felis_catus
MGP_SPRETEiJ_G0029032	Polr1d	72	73.958	ENSFALG00000011463	POLR1D	95	73.958	Ficedula_albicollis
MGP_SPRETEiJ_G0029032	Polr1d	100	90.226	ENSFDAG00000004463	POLR1D	100	90.226	Fukomys_damarensis
MGP_SPRETEiJ_G0029032	Polr1d	80	72.897	ENSFHEG00000015410	polr1d	93	72.897	Fundulus_heteroclitus
MGP_SPRETEiJ_G0029032	Polr1d	54	62.500	ENSGALG00000007470	POLR1D	71	62.500	Gallus_gallus
MGP_SPRETEiJ_G0029032	Polr1d	78	71.154	ENSGAFG00000001693	polr1d	91	71.154	Gambusia_affinis
MGP_SPRETEiJ_G0029032	Polr1d	83	68.750	ENSGACG00000018585	polr1d	95	68.750	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0029032	Polr1d	82	74.312	ENSGAGG00000008503	POLR1D	96	74.312	Gopherus_agassizii
MGP_SPRETEiJ_G0029032	Polr1d	100	90.977	ENSGGOG00000004235	POLR1D	100	90.977	Gorilla_gorilla
MGP_SPRETEiJ_G0029032	Polr1d	84	66.964	ENSHBUG00000002111	polr1d	98	66.964	Haplochromis_burtoni
MGP_SPRETEiJ_G0029032	Polr1d	100	90.226	ENSHGLG00000003202	POLR1D	100	90.226	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0029032	Polr1d	100	90.226	ENSHGLG00100009393	POLR1D	100	90.226	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0029032	Polr1d	80	68.224	ENSHCOG00000003258	polr1d	94	68.224	Hippocampus_comes
MGP_SPRETEiJ_G0029032	Polr1d	82	68.807	ENSIPUG00000014810	polr1d	95	68.807	Ictalurus_punctatus
MGP_SPRETEiJ_G0029032	Polr1d	100	91.729	ENSSTOG00000013877	POLR1D	100	91.729	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0029032	Polr1d	95	69.841	ENSJJAG00000021667	-	75	69.841	Jaculus_jaculus
MGP_SPRETEiJ_G0029032	Polr1d	97	85.714	ENSJJAG00000022671	-	100	88.333	Jaculus_jaculus
MGP_SPRETEiJ_G0029032	Polr1d	83	63.063	ENSKMAG00000015256	polr1d	97	63.063	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0029032	Polr1d	78	70.192	ENSLBEG00000015919	polr1d	91	70.192	Labrus_bergylta
MGP_SPRETEiJ_G0029032	Polr1d	87	64.655	ENSLACG00000006810	POLR1D	96	64.655	Latimeria_chalumnae
MGP_SPRETEiJ_G0029032	Polr1d	54	75.676	ENSLOCG00000014976	polr1d	100	75.676	Lepisosteus_oculatus
MGP_SPRETEiJ_G0029032	Polr1d	100	85.714	ENSLAFG00000032290	POLR1D	100	85.714	Loxodonta_africana
MGP_SPRETEiJ_G0029032	Polr1d	94	89.600	ENSMFAG00000045264	POLR1D	97	89.600	Macaca_fascicularis
MGP_SPRETEiJ_G0029032	Polr1d	100	70.677	ENSMMUG00000041570	-	100	70.677	Macaca_mulatta
MGP_SPRETEiJ_G0029032	Polr1d	87	89.655	ENSMMUG00000020386	POLR1D	100	89.655	Macaca_mulatta
MGP_SPRETEiJ_G0029032	Polr1d	100	90.226	ENSMNEG00000008630	-	100	90.226	Macaca_nemestrina
MGP_SPRETEiJ_G0029032	Polr1d	100	74.436	ENSMNEG00000038120	-	100	74.436	Macaca_nemestrina
MGP_SPRETEiJ_G0029032	Polr1d	100	79.699	ENSMLEG00000032251	-	100	79.699	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0029032	Polr1d	100	90.226	ENSMLEG00000041048	-	100	90.226	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0029032	Polr1d	76	69.307	ENSMAMG00000014834	polr1d	94	69.307	Mastacembelus_armatus
MGP_SPRETEiJ_G0029032	Polr1d	77	72.549	ENSMZEG00005006638	polr1d	90	72.549	Maylandia_zebra
MGP_SPRETEiJ_G0029032	Polr1d	69	73.913	ENSMGAG00000005322	POLR1D	84	73.913	Meleagris_gallopavo
MGP_SPRETEiJ_G0029032	Polr1d	100	90.977	ENSMAUG00000001946	Polr1d	100	90.977	Mesocricetus_auratus
MGP_SPRETEiJ_G0029032	Polr1d	99	77.273	ENSMICG00000007349	-	100	77.273	Microcebus_murinus
MGP_SPRETEiJ_G0029032	Polr1d	100	90.226	ENSMICG00000016883	-	100	90.226	Microcebus_murinus
MGP_SPRETEiJ_G0029032	Polr1d	99	90.909	ENSMOCG00000021288	Polr1d	99	90.909	Microtus_ochrogaster
MGP_SPRETEiJ_G0029032	Polr1d	80	66.355	ENSMMOG00000009605	polr1d	94	66.355	Mola_mola
MGP_SPRETEiJ_G0029032	Polr1d	83	77.477	ENSMODG00000023881	POLR1D	97	77.477	Monodelphis_domestica
MGP_SPRETEiJ_G0029032	Polr1d	80	65.421	ENSMALG00000010652	polr1d	94	65.421	Monopterus_albus
MGP_SPRETEiJ_G0029032	Polr1d	100	98.496	MGP_CAROLIEiJ_G0028034	Polr1d	100	98.496	Mus_caroli
MGP_SPRETEiJ_G0029032	Polr1d	100	99.248	ENSMUSG00000029642	Polr1d	100	99.248	Mus_musculus
MGP_SPRETEiJ_G0029032	Polr1d	100	98.496	MGP_PahariEiJ_G0024600	Polr1d	100	98.496	Mus_pahari
MGP_SPRETEiJ_G0029032	Polr1d	99	79.545	ENSMLUG00000004118	-	99	79.545	Myotis_lucifugus
MGP_SPRETEiJ_G0029032	Polr1d	100	88.722	ENSMLUG00000027169	-	100	88.722	Myotis_lucifugus
MGP_SPRETEiJ_G0029032	Polr1d	87	88.793	ENSNGAG00000006014	Polr1d	100	88.793	Nannospalax_galili
MGP_SPRETEiJ_G0029032	Polr1d	84	66.964	ENSNBRG00000020327	polr1d	98	66.964	Neolamprologus_brichardi
MGP_SPRETEiJ_G0029032	Polr1d	100	90.977	ENSNLEG00000000358	POLR1D	100	90.977	Nomascus_leucogenys
MGP_SPRETEiJ_G0029032	Polr1d	100	75.940	ENSODEG00000014801	-	100	75.940	Octodon_degus
MGP_SPRETEiJ_G0029032	Polr1d	100	89.474	ENSODEG00000005294	-	100	89.474	Octodon_degus
MGP_SPRETEiJ_G0029032	Polr1d	77	80.583	ENSOANG00000008708	-	95	80.583	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0029032	Polr1d	100	90.977	ENSOCUG00000015706	POLR1D	82	90.977	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0029032	Polr1d	84	64.286	ENSORLG00000010257	polr1d	98	64.286	Oryzias_latipes
MGP_SPRETEiJ_G0029032	Polr1d	83	64.865	ENSORLG00020000533	polr1d	75	64.865	Oryzias_latipes_hni
MGP_SPRETEiJ_G0029032	Polr1d	86	64.912	ENSORLG00015013267	polr1d	75	64.912	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0029032	Polr1d	91	62.810	ENSOMEG00000014912	polr1d	81	62.810	Oryzias_melastigma
MGP_SPRETEiJ_G0029032	Polr1d	100	91.729	ENSOGAG00000014601	POLR1D	100	91.729	Otolemur_garnettii
MGP_SPRETEiJ_G0029032	Polr1d	94	88.800	ENSOARG00000017005	POLR1D	96	88.800	Ovis_aries
MGP_SPRETEiJ_G0029032	Polr1d	100	90.226	ENSPPAG00000028138	POLR1D	100	90.226	Pan_paniscus
MGP_SPRETEiJ_G0029032	Polr1d	99	90.909	ENSPPRG00000003381	POLR1D	99	90.909	Panthera_pardus
MGP_SPRETEiJ_G0029032	Polr1d	93	91.129	ENSPTIG00000018137	POLR1D	93	91.129	Panthera_tigris_altaica
MGP_SPRETEiJ_G0029032	Polr1d	100	90.977	ENSPTRG00000005734	POLR1D	100	90.977	Pan_troglodytes
MGP_SPRETEiJ_G0029032	Polr1d	100	90.226	ENSPANG00000020259	-	100	90.226	Papio_anubis
MGP_SPRETEiJ_G0029032	Polr1d	100	79.699	ENSPANG00000035051	-	100	79.699	Papio_anubis
MGP_SPRETEiJ_G0029032	Polr1d	80	64.486	ENSPKIG00000021891	polr1d	91	50.435	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0029032	Polr1d	87	70.940	ENSPSIG00000011822	POLR1D	91	70.940	Pelodiscus_sinensis
MGP_SPRETEiJ_G0029032	Polr1d	84	64.286	ENSPMGG00000010359	polr1d	97	64.286	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0029032	Polr1d	93	55.200	ENSPMGG00000012998	POLR1D	93	55.200	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0029032	Polr1d	100	87.218	ENSPEMG00000006336	-	100	87.218	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0029032	Polr1d	81	57.407	ENSPMAG00000004228	polr1d	91	57.407	Petromyzon_marinus
MGP_SPRETEiJ_G0029032	Polr1d	83	77.477	ENSPCIG00000001673	POLR1D	97	77.477	Phascolarctos_cinereus
MGP_SPRETEiJ_G0029032	Polr1d	78	71.154	ENSPFOG00000023343	polr1d	100	66.667	Poecilia_formosa
MGP_SPRETEiJ_G0029032	Polr1d	78	71.154	ENSPLAG00000009675	polr1d	91	71.154	Poecilia_latipinna
MGP_SPRETEiJ_G0029032	Polr1d	78	71.154	ENSPMEG00000004628	polr1d	91	71.154	Poecilia_mexicana
MGP_SPRETEiJ_G0029032	Polr1d	78	71.154	ENSPREG00000022032	polr1d	91	71.154	Poecilia_reticulata
MGP_SPRETEiJ_G0029032	Polr1d	100	90.977	ENSPCOG00000028175	POLR1D	100	90.977	Propithecus_coquereli
MGP_SPRETEiJ_G0029032	Polr1d	84	66.964	ENSPNYG00000000107	polr1d	98	66.964	Pundamilia_nyererei
MGP_SPRETEiJ_G0029032	Polr1d	82	63.303	ENSPNAG00000001512	polr1d	94	62.500	Pygocentrus_nattereri
MGP_SPRETEiJ_G0029032	Polr1d	100	87.218	ENSRBIG00000000336	-	100	87.218	Rhinopithecus_bieti
MGP_SPRETEiJ_G0029032	Polr1d	100	90.226	ENSRBIG00000036378	-	100	90.226	Rhinopithecus_bieti
MGP_SPRETEiJ_G0029032	Polr1d	100	90.226	ENSRROG00000042232	-	100	90.226	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0029032	Polr1d	100	86.466	ENSRROG00000026751	-	100	86.466	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0029032	Polr1d	89	43.697	YNL113W	RPC19	84	43.697	Saccharomyces_cerevisiae
MGP_SPRETEiJ_G0029032	Polr1d	100	90.977	ENSSBOG00000028482	-	100	90.977	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0029032	Polr1d	86	87.719	ENSSBOG00000030146	-	84	87.719	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0029032	Polr1d	86	74.561	ENSSHAG00000001190	POLR1D	88	74.561	Sarcophilus_harrisii
MGP_SPRETEiJ_G0029032	Polr1d	82	69.725	ENSSFOG00015011375	polr1d	96	69.725	Scleropages_formosus
MGP_SPRETEiJ_G0029032	Polr1d	84	65.179	ENSSMAG00000011861	polr1d	98	65.179	Scophthalmus_maximus
MGP_SPRETEiJ_G0029032	Polr1d	84	63.393	ENSSDUG00000011930	polr1d	98	63.393	Seriola_dumerili
MGP_SPRETEiJ_G0029032	Polr1d	86	61.739	ENSSLDG00000023871	polr1d	97	61.739	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0029032	Polr1d	100	90.977	ENSSARG00000007840	POLR1D	100	90.977	Sorex_araneus
MGP_SPRETEiJ_G0029032	Polr1d	79	73.333	ENSSPUG00000005786	POLR1D	95	70.270	Sphenodon_punctatus
MGP_SPRETEiJ_G0029032	Polr1d	78	71.154	ENSSPAG00000011764	polr1d	91	71.154	Stegastes_partitus
MGP_SPRETEiJ_G0029032	Polr1d	100	89.474	ENSSSCG00000009310	POLR1D	100	89.474	Sus_scrofa
MGP_SPRETEiJ_G0029032	Polr1d	72	73.958	ENSTGUG00000005450	POLR1D	100	73.958	Taeniopygia_guttata
MGP_SPRETEiJ_G0029032	Polr1d	77	64.078	ENSTRUG00000019741	polr1d	90	64.078	Takifugu_rubripes
MGP_SPRETEiJ_G0029032	Polr1d	93	91.129	ENSTBEG00000007006	POLR1D	100	91.129	Tupaia_belangeri
MGP_SPRETEiJ_G0029032	Polr1d	100	90.977	ENSUAMG00000011413	POLR1D	100	90.977	Ursus_americanus
MGP_SPRETEiJ_G0029032	Polr1d	93	91.129	ENSUMAG00000016968	POLR1D	97	91.129	Ursus_maritimus
MGP_SPRETEiJ_G0029032	Polr1d	100	90.977	ENSVVUG00000009216	POLR1D	100	90.977	Vulpes_vulpes
MGP_SPRETEiJ_G0029032	Polr1d	74	73.469	ENSXCOG00000011731	polr1d	75	73.469	Xiphophorus_couchianus
MGP_SPRETEiJ_G0029032	Polr1d	74	73.469	ENSXMAG00000017538	polr1d	75	73.469	Xiphophorus_maculatus