EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0029717 (Gene tree)
Gene ID: -
Gene Symbol: Shq1
Alias: 2810403P18Rik|Grim-1
Full Name: SHQ1 homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 109852 bases
Position: chr6:100193389-100303240
Accession: 1919421
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0078282	SHQ1	PF04925.15	1.1e-68	1	1
MGP_SPRETEiJ_P0078283	SHQ1	PF04925.15	1.1e-68	1	1
MGP_SPRETEiJ_P0078284	SHQ1	PF04925.15	1.1e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0078282	-	6185	-	MGP_SPRETEiJ_P0078282	569 (aa)	-	-
MGP_SPRETEiJ_T0078283	-	1992	-	MGP_SPRETEiJ_P0078283	569 (aa)	-	-
MGP_SPRETEiJ_T0078284	-	1640	-	MGP_SPRETEiJ_P0078284	458 (aa)	-	-
MGP_SPRETEiJ_T0078285	-	755	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0029717's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0029717's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0029717	Shq1	98	84.016	ENSG00000144736	SHQ1	100	82.000	Homo_sapiens
MGP_SPRETEiJ_G0029717	Shq1	76	61.327	ENSAPOG00000000397	shq1	78	58.592	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0029717	Shq1	100	84.836	ENSAMEG00000015140	SHQ1	100	76.125	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0029717	Shq1	76	61.149	ENSACIG00000021249	shq1	77	58.824	Amphilophus_citrinellus
MGP_SPRETEiJ_G0029717	Shq1	78	61.830	ENSAOCG00000023311	shq1	77	59.834	Amphiprion_ocellaris
MGP_SPRETEiJ_G0029717	Shq1	78	61.607	ENSAPEG00000021686	shq1	77	59.748	Amphiprion_percula
MGP_SPRETEiJ_G0029717	Shq1	78	60.403	ENSATEG00000008475	shq1	79	57.464	Anabas_testudineus
MGP_SPRETEiJ_G0029717	Shq1	86	67.213	ENSAPLG00000013926	SHQ1	100	62.868	Anas_platyrhynchos
MGP_SPRETEiJ_G0029717	Shq1	97	64.000	ENSACAG00000014809	SHQ1	84	61.023	Anolis_carolinensis
MGP_SPRETEiJ_G0029717	Shq1	98	81.557	ENSANAG00000029241	SHQ1	98	75.485	Aotus_nancymaae
MGP_SPRETEiJ_G0029717	Shq1	96	58.559	ENSANAG00000030500	-	98	57.321	Aotus_nancymaae
MGP_SPRETEiJ_G0029717	Shq1	78	58.202	ENSACLG00000023077	shq1	79	53.438	Astatotilapia_calliptera
MGP_SPRETEiJ_G0029717	Shq1	76	55.093	ENSAMXG00000043822	shq1	82	53.556	Astyanax_mexicanus
MGP_SPRETEiJ_G0029717	Shq1	100	81.148	ENSBTAG00000005436	SHQ1	100	73.966	Bos_taurus
MGP_SPRETEiJ_G0029717	Shq1	76	32.511	WBGene00021655	Y48A5A.1	97	33.333	Caenorhabditis_elegans
MGP_SPRETEiJ_G0029717	Shq1	98	81.557	ENSCJAG00000015131	SHQ1	98	75.044	Callithrix_jacchus
MGP_SPRETEiJ_G0029717	Shq1	100	83.607	ENSCAFG00000006434	SHQ1	99	75.862	Canis_familiaris
MGP_SPRETEiJ_G0029717	Shq1	100	83.607	ENSCAFG00020016743	SHQ1	99	75.862	Canis_lupus_dingo
MGP_SPRETEiJ_G0029717	Shq1	100	81.148	ENSCHIG00000012271	SHQ1	91	73.966	Capra_hircus
MGP_SPRETEiJ_G0029717	Shq1	99	73.038	ENSTSYG00000014439	SHQ1	99	70.928	Carlito_syrichta
MGP_SPRETEiJ_G0029717	Shq1	90	64.231	ENSCAPG00000009343	SHQ1	97	87.013	Cavia_aperea
MGP_SPRETEiJ_G0029717	Shq1	98	82.377	ENSCPOG00000011443	SHQ1	99	73.242	Cavia_porcellus
MGP_SPRETEiJ_G0029717	Shq1	98	65.079	ENSCCAG00000027080	SHQ1	98	64.198	Cebus_capucinus
MGP_SPRETEiJ_G0029717	Shq1	95	61.233	ENSCCAG00000036087	-	97	59.180	Cebus_capucinus
MGP_SPRETEiJ_G0029717	Shq1	100	82.377	ENSCATG00000041238	SHQ1	100	73.621	Cercocebus_atys
MGP_SPRETEiJ_G0029717	Shq1	98	83.197	ENSCLAG00000004206	SHQ1	99	74.048	Chinchilla_lanigera
MGP_SPRETEiJ_G0029717	Shq1	81	76.774	ENSCSAG00000011514	SHQ1	100	70.265	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0029717	Shq1	61	70.145	ENSCHOG00000003273	-	100	70.145	Choloepus_hoffmanni
MGP_SPRETEiJ_G0029717	Shq1	97	69.328	ENSCPBG00000006441	SHQ1	93	61.579	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0029717	Shq1	68	48.529	ENSCING00000008013	-	95	41.002	Ciona_intestinalis
MGP_SPRETEiJ_G0029717	Shq1	62	60.465	ENSCSAVG00000002332	-	98	40.682	Ciona_savignyi
MGP_SPRETEiJ_G0029717	Shq1	99	82.377	ENSCANG00000039295	SHQ1	100	73.519	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0029717	Shq1	100	93.443	ENSCGRG00001012583	Shq1	100	93.443	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0029717	Shq1	100	93.443	ENSCGRG00000009849	Shq1	100	93.443	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0029717	Shq1	73	61.814	ENSCSEG00000007829	shq1	76	58.969	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0029717	Shq1	76	60.412	ENSCVAG00000020049	shq1	95	51.365	Cyprinodon_variegatus
MGP_SPRETEiJ_G0029717	Shq1	76	59.497	ENSDARG00000058522	shq1	84	53.846	Danio_rerio
MGP_SPRETEiJ_G0029717	Shq1	100	83.607	ENSDNOG00000033937	SHQ1	100	74.567	Dasypus_novemcinctus
MGP_SPRETEiJ_G0029717	Shq1	96	83.663	ENSETEG00000005766	SHQ1	99	64.460	Echinops_telfairi
MGP_SPRETEiJ_G0029717	Shq1	78	46.444	ENSEBUG00000005445	shq1	99	45.333	Eptatretus_burgeri
MGP_SPRETEiJ_G0029717	Shq1	100	84.016	ENSEASG00005002237	SHQ1	100	76.471	Equus_asinus_asinus
MGP_SPRETEiJ_G0029717	Shq1	99	84.426	ENSECAG00000015673	SHQ1	98	75.868	Equus_caballus
MGP_SPRETEiJ_G0029717	Shq1	100	81.092	ENSEEUG00000010568	SHQ1	100	72.491	Erinaceus_europaeus
MGP_SPRETEiJ_G0029717	Shq1	55	81.818	ENSELUG00000003476	shq1	81	58.763	Esox_lucius
MGP_SPRETEiJ_G0029717	Shq1	100	84.426	ENSFCAG00000012781	SHQ1	100	76.174	Felis_catus
MGP_SPRETEiJ_G0029717	Shq1	98	69.672	ENSFALG00000013428	SHQ1	94	60.139	Ficedula_albicollis
MGP_SPRETEiJ_G0029717	Shq1	98	82.787	ENSFDAG00000005595	SHQ1	91	70.420	Fukomys_damarensis
MGP_SPRETEiJ_G0029717	Shq1	76	60.137	ENSFHEG00000017552	shq1	79	58.246	Fundulus_heteroclitus
MGP_SPRETEiJ_G0029717	Shq1	57	75.610	ENSGMOG00000007350	shq1	100	59.045	Gadus_morhua
MGP_SPRETEiJ_G0029717	Shq1	97	69.874	ENSGALG00000007798	SHQ1	93	60.070	Gallus_gallus
MGP_SPRETEiJ_G0029717	Shq1	57	78.049	ENSGACG00000011797	shq1	100	59.698	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0029717	Shq1	98	83.607	ENSGGOG00000034818	SHQ1	99	74.346	Gorilla_gorilla
MGP_SPRETEiJ_G0029717	Shq1	78	57.978	ENSHBUG00000010857	shq1	78	56.458	Haplochromis_burtoni
MGP_SPRETEiJ_G0029717	Shq1	97	84.454	ENSHGLG00000003637	SHQ1	91	72.789	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0029717	Shq1	97	84.454	ENSHGLG00100011957	SHQ1	90	73.038	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0029717	Shq1	94	51.583	ENSHCOG00000010799	shq1	90	52.941	Hippocampus_comes
MGP_SPRETEiJ_G0029717	Shq1	76	59.276	ENSIPUG00000001247	shq1	85	55.098	Ictalurus_punctatus
MGP_SPRETEiJ_G0029717	Shq1	98	81.148	ENSSTOG00000010043	SHQ1	100	73.084	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0029717	Shq1	99	85.246	ENSJJAG00000017611	Shq1	99	85.246	Jaculus_jaculus
MGP_SPRETEiJ_G0029717	Shq1	76	61.276	ENSKMAG00000004457	shq1	95	52.931	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0029717	Shq1	100	65.060	ENSLACG00000014243	SHQ1	87	55.366	Latimeria_chalumnae
MGP_SPRETEiJ_G0029717	Shq1	78	63.535	ENSLOCG00000009970	shq1	97	56.007	Lepisosteus_oculatus
MGP_SPRETEiJ_G0029717	Shq1	100	82.787	ENSMFAG00000039148	SHQ1	100	73.793	Macaca_fascicularis
MGP_SPRETEiJ_G0029717	Shq1	99	55.009	ENSMFAG00000037396	-	99	54.035	Macaca_fascicularis
MGP_SPRETEiJ_G0029717	Shq1	90	81.633	ENSMMUG00000009571	SHQ1	96	72.556	Macaca_mulatta
MGP_SPRETEiJ_G0029717	Shq1	99	54.833	ENSMMUG00000021761	-	99	53.860	Macaca_mulatta
MGP_SPRETEiJ_G0029717	Shq1	100	82.787	ENSMNEG00000032667	SHQ1	100	73.793	Macaca_nemestrina
MGP_SPRETEiJ_G0029717	Shq1	100	82.377	ENSMLEG00000038493	SHQ1	100	73.793	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0029717	Shq1	78	59.865	ENSMAMG00000023432	shq1	74	57.084	Mastacembelus_armatus
MGP_SPRETEiJ_G0029717	Shq1	78	58.202	ENSMZEG00005008649	shq1	78	56.667	Maylandia_zebra
MGP_SPRETEiJ_G0029717	Shq1	98	68.880	ENSMGAG00000009640	SHQ1	93	59.194	Meleagris_gallopavo
MGP_SPRETEiJ_G0029717	Shq1	100	93.033	ENSMAUG00000022030	Shq1	100	93.033	Mesocricetus_auratus
MGP_SPRETEiJ_G0029717	Shq1	98	84.490	ENSMICG00000009224	SHQ1	99	75.302	Microcebus_murinus
MGP_SPRETEiJ_G0029717	Shq1	100	93.033	ENSMOCG00000017836	Shq1	100	93.033	Microtus_ochrogaster
MGP_SPRETEiJ_G0029717	Shq1	78	58.784	ENSMMOG00000010569	shq1	81	54.959	Mola_mola
MGP_SPRETEiJ_G0029717	Shq1	94	69.874	ENSMODG00000003926	SHQ1	98	62.523	Monodelphis_domestica
MGP_SPRETEiJ_G0029717	Shq1	97	53.439	ENSMALG00000008870	shq1	91	53.263	Monopterus_albus
MGP_SPRETEiJ_G0029717	Shq1	100	97.951	MGP_CAROLIEiJ_G0028689	Shq1	100	97.951	Mus_caroli
MGP_SPRETEiJ_G0029717	Shq1	100	98.770	ENSMUSG00000035378	Shq1	100	98.770	Mus_musculus
MGP_SPRETEiJ_G0029717	Shq1	100	96.311	MGP_PahariEiJ_G0022440	Shq1	100	96.311	Mus_pahari
MGP_SPRETEiJ_G0029717	Shq1	100	81.967	ENSMPUG00000017006	SHQ1	98	74.483	Mustela_putorius_furo
MGP_SPRETEiJ_G0029717	Shq1	90	69.143	ENSMLUG00000013539	SHQ1	98	70.250	Myotis_lucifugus
MGP_SPRETEiJ_G0029717	Shq1	98	74.291	ENSNGAG00000023317	Shq1	100	74.291	Nannospalax_galili
MGP_SPRETEiJ_G0029717	Shq1	62	56.742	ENSNBRG00000024004	shq1	75	54.987	Neolamprologus_brichardi
MGP_SPRETEiJ_G0029717	Shq1	98	84.426	ENSNLEG00000002731	SHQ1	99	75.218	Nomascus_leucogenys
MGP_SPRETEiJ_G0029717	Shq1	83	64.815	ENSMEUG00000009350	-	89	64.815	Notamacropus_eugenii
MGP_SPRETEiJ_G0029717	Shq1	99	70.345	ENSODEG00000009192	SHQ1	98	82.773	Octodon_degus
MGP_SPRETEiJ_G0029717	Shq1	78	57.753	ENSONIG00000020264	shq1	78	56.250	Oreochromis_niloticus
MGP_SPRETEiJ_G0029717	Shq1	99	83.613	ENSOCUG00000016695	SHQ1	90	83.613	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0029717	Shq1	76	60.417	ENSORLG00000023538	shq1	83	57.511	Oryzias_latipes
MGP_SPRETEiJ_G0029717	Shq1	76	60.648	ENSORLG00020003697	shq1	82	57.725	Oryzias_latipes_hni
MGP_SPRETEiJ_G0029717	Shq1	76	60.648	ENSORLG00015021040	shq1	85	55.761	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0029717	Shq1	76	61.574	ENSOMEG00000001225	shq1	89	56.040	Oryzias_melastigma
MGP_SPRETEiJ_G0029717	Shq1	98	81.781	ENSOGAG00000003898	SHQ1	100	74.869	Otolemur_garnettii
MGP_SPRETEiJ_G0029717	Shq1	99	80.081	ENSOARG00000009547	SHQ1	99	73.748	Ovis_aries
MGP_SPRETEiJ_G0029717	Shq1	98	84.426	ENSPPAG00000027714	SHQ1	99	74.520	Pan_paniscus
MGP_SPRETEiJ_G0029717	Shq1	99	57.812	ENSPPAG00000043263	-	99	56.771	Pan_paniscus
MGP_SPRETEiJ_G0029717	Shq1	100	84.426	ENSPPRG00000004769	SHQ1	100	76.034	Panthera_pardus
MGP_SPRETEiJ_G0029717	Shq1	100	77.778	ENSPTIG00000011478	SHQ1	100	71.897	Panthera_tigris_altaica
MGP_SPRETEiJ_G0029717	Shq1	98	84.426	ENSPTRG00000015106	SHQ1	99	74.520	Pan_troglodytes
MGP_SPRETEiJ_G0029717	Shq1	99	57.118	ENSPTRG00000048303	-	99	56.076	Pan_troglodytes
MGP_SPRETEiJ_G0029717	Shq1	100	81.557	ENSPANG00000002881	SHQ1	100	74.310	Papio_anubis
MGP_SPRETEiJ_G0029717	Shq1	65	68.919	ENSPKIG00000021517	shq1	93	51.201	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0029717	Shq1	98	67.886	ENSPSIG00000005536	SHQ1	93	62.105	Pelodiscus_sinensis
MGP_SPRETEiJ_G0029717	Shq1	67	70.238	ENSPMGG00000008838	shq1	79	55.187	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0029717	Shq1	100	92.623	ENSPEMG00000000251	Shq1	100	92.623	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0029717	Shq1	76	56.561	ENSPMAG00000005372	shq1	98	56.787	Petromyzon_marinus
MGP_SPRETEiJ_G0029717	Shq1	76	58.770	ENSPFOG00000003118	shq1	89	54.527	Poecilia_formosa
MGP_SPRETEiJ_G0029717	Shq1	61	56.897	ENSPMEG00000011076	shq1	96	47.826	Poecilia_mexicana
MGP_SPRETEiJ_G0029717	Shq1	70	55.882	ENSPREG00000000591	shq1	96	49.046	Poecilia_reticulata
MGP_SPRETEiJ_G0029717	Shq1	98	83.197	ENSPPYG00000013717	SHQ1	99	74.346	Pongo_abelii
MGP_SPRETEiJ_G0029717	Shq1	94	83.607	ENSPCAG00000009035	SHQ1	99	75.221	Procavia_capensis
MGP_SPRETEiJ_G0029717	Shq1	98	82.996	ENSPCOG00000008415	SHQ1	99	74.567	Propithecus_coquereli
MGP_SPRETEiJ_G0029717	Shq1	98	81.557	ENSPVAG00000017392	SHQ1	99	74.956	Pteropus_vampyrus
MGP_SPRETEiJ_G0029717	Shq1	78	58.202	ENSPNYG00000003878	shq1	78	56.667	Pundamilia_nyererei
MGP_SPRETEiJ_G0029717	Shq1	76	59.447	ENSPNAG00000026840	shq1	79	56.415	Pygocentrus_nattereri
MGP_SPRETEiJ_G0029717	Shq1	100	95.492	ENSRNOG00000005433	Shq1	91	95.492	Rattus_norvegicus
MGP_SPRETEiJ_G0029717	Shq1	99	77.600	ENSRBIG00000026280	SHQ1	100	69.913	Rhinopithecus_bieti
MGP_SPRETEiJ_G0029717	Shq1	99	82.377	ENSRROG00000034126	SHQ1	100	73.519	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0029717	Shq1	98	65.984	ENSSBOG00000021038	SHQ1	98	66.960	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0029717	Shq1	94	72.083	ENSSHAG00000015077	SHQ1	96	63.187	Sarcophilus_harrisii
MGP_SPRETEiJ_G0029717	Shq1	77	62.100	ENSSFOG00015016241	shq1	87	58.932	Scleropages_formosus
MGP_SPRETEiJ_G0029717	Shq1	78	61.969	ENSSMAG00000016151	shq1	77	59.748	Scophthalmus_maximus
MGP_SPRETEiJ_G0029717	Shq1	78	60.352	ENSSDUG00000011986	shq1	77	58.969	Seriola_dumerili
MGP_SPRETEiJ_G0029717	Shq1	78	59.867	ENSSLDG00000013908	shq1	77	58.506	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0029717	Shq1	98	67.340	ENSSARG00000007119	SHQ1	98	60.035	Sorex_araneus
MGP_SPRETEiJ_G0029717	Shq1	75	67.742	ENSSPUG00000011526	-	87	59.442	Sphenodon_punctatus
MGP_SPRETEiJ_G0029717	Shq1	99	79.918	ENSSSCG00000011518	SHQ1	99	72.474	Sus_scrofa
MGP_SPRETEiJ_G0029717	Shq1	98	64.469	ENSTGUG00000009933	SHQ1	99	60.243	Taeniopygia_guttata
MGP_SPRETEiJ_G0029717	Shq1	66	66.176	ENSTRUG00000009446	shq1	79	56.042	Takifugu_rubripes
MGP_SPRETEiJ_G0029717	Shq1	73	55.769	ENSTNIG00000007354	shq1	99	55.098	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0029717	Shq1	72	89.362	ENSTBEG00000011295	SHQ1	78	89.362	Tupaia_belangeri
MGP_SPRETEiJ_G0029717	Shq1	97	82.377	ENSTTRG00000005320	SHQ1	98	75.709	Tursiops_truncatus
MGP_SPRETEiJ_G0029717	Shq1	97	85.217	ENSUMAG00000024031	SHQ1	88	85.217	Ursus_maritimus
MGP_SPRETEiJ_G0029717	Shq1	77	67.857	ENSVPAG00000004880	SHQ1	100	63.790	Vicugna_pacos
MGP_SPRETEiJ_G0029717	Shq1	100	83.607	ENSVVUG00000013906	SHQ1	99	75.862	Vulpes_vulpes
MGP_SPRETEiJ_G0029717	Shq1	78	64.494	ENSXETG00000032215	shq1	77	63.257	Xenopus_tropicalis