EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0029753 (Gene tree)
Gene ID: -
Gene Symbol: Rpusd3
Alias: -
Full Name: RNA pseudouridylate synthase domain containing 3
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 4034 bases
Position: chr6:113314349-113318382
Accession: 2141440
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0078488	PseudoU_synth_2	PF00849.22	7.7e-18	1	1
MGP_SPRETEiJ_P0078487	PseudoU_synth_2	PF00849.22	1.1e-17	1	1
MGP_SPRETEiJ_P0078484	PseudoU_synth_2	PF00849.22	1.4e-17	1	1
MGP_SPRETEiJ_P0078485	PseudoU_synth_2	PF00849.22	5.3e-14	1	1
MGP_SPRETEiJ_P0078490	PseudoU_synth_2	PF00849.22	2.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0078486	-	321	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0078487	-	1045	-	MGP_SPRETEiJ_P0078487	315 (aa)	-	-
MGP_SPRETEiJ_T0078484	-	1269	-	MGP_SPRETEiJ_P0078484	344 (aa)	-	-
MGP_SPRETEiJ_T0078485	-	1224	-	MGP_SPRETEiJ_P0078485	279 (aa)	-	-
MGP_SPRETEiJ_T0078491	-	522	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0078490	-	549	-	MGP_SPRETEiJ_P0078490	182 (aa)	-	-
MGP_SPRETEiJ_T0078493	-	751	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0078492	-	365	-	MGP_SPRETEiJ_P0078492	117 (aa)	-	-
MGP_SPRETEiJ_T0078488	-	805	-	MGP_SPRETEiJ_P0078488	268 (aa)	-	-
MGP_SPRETEiJ_T0078489	-	781	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0029753's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0029753's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0029753	Rpusd3	78	34.043	MGP_SPRETEiJ_G0033078	Rpusd4	70	34.043

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0029753	Rpusd3	100	72.384	ENSG00000156990	RPUSD3	98	72.384	Homo_sapiens
MGP_SPRETEiJ_G0029753	Rpusd3	100	71.221	ENSAMEG00000016227	RPUSD3	98	71.221	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0029753	Rpusd3	81	54.587	ENSACAG00000009836	RPUSD3	80	53.381	Anolis_carolinensis
MGP_SPRETEiJ_G0029753	Rpusd3	93	50.929	ENSANAG00000007127	-	95	51.971	Aotus_nancymaae
MGP_SPRETEiJ_G0029753	Rpusd3	69	73.656	ENSANAG00000019945	-	77	71.354	Aotus_nancymaae
MGP_SPRETEiJ_G0029753	Rpusd3	70	70.745	ENSANAG00000038118	-	90	70.745	Aotus_nancymaae
MGP_SPRETEiJ_G0029753	Rpusd3	100	71.802	ENSBTAG00000007968	RPUSD3	100	71.802	Bos_taurus
MGP_SPRETEiJ_G0029753	Rpusd3	100	71.221	ENSCAFG00000029733	RPUSD3	98	71.221	Canis_familiaris
MGP_SPRETEiJ_G0029753	Rpusd3	100	71.221	ENSCAFG00020008582	RPUSD3	98	71.221	Canis_lupus_dingo
MGP_SPRETEiJ_G0029753	Rpusd3	99	73.034	ENSCHIG00000026027	RPUSD3	100	71.221	Capra_hircus
MGP_SPRETEiJ_G0029753	Rpusd3	96	69.254	ENSTSYG00000009994	RPUSD3	95	69.254	Carlito_syrichta
MGP_SPRETEiJ_G0029753	Rpusd3	74	76.884	ENSCAPG00000017559	RPUSD3	99	74.144	Cavia_aperea
MGP_SPRETEiJ_G0029753	Rpusd3	96	67.442	ENSCPOG00000037956	RPUSD3	90	63.557	Cavia_porcellus
MGP_SPRETEiJ_G0029753	Rpusd3	98	72.700	ENSCCAG00000029530	RPUSD3	97	72.700	Cebus_capucinus
MGP_SPRETEiJ_G0029753	Rpusd3	100	72.674	ENSCATG00000036939	RPUSD3	98	72.674	Cercocebus_atys
MGP_SPRETEiJ_G0029753	Rpusd3	100	72.965	ENSCSAG00000010506	RPUSD3	98	72.965	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0029753	Rpusd3	51	77.778	ENSCHOG00000010151	-	67	77.778	Choloepus_hoffmanni
MGP_SPRETEiJ_G0029753	Rpusd3	72	54.872	ENSCPBG00000008825	RPUSD3	95	53.307	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0029753	Rpusd3	100	72.384	ENSCANG00000040711	RPUSD3	98	72.384	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0029753	Rpusd3	100	83.721	ENSCGRG00001004923	Rpusd3	95	83.721	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0029753	Rpusd3	100	83.721	ENSCGRG00000018315	Rpusd3	100	83.721	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0029753	Rpusd3	99	70.262	ENSDNOG00000039160	RPUSD3	91	70.262	Dasypus_novemcinctus
MGP_SPRETEiJ_G0029753	Rpusd3	76	74.157	ENSDORG00000026827	Rpusd3	92	74.157	Dipodomys_ordii
MGP_SPRETEiJ_G0029753	Rpusd3	97	68.060	ENSETEG00000006538	RPUSD3	95	68.060	Echinops_telfairi
MGP_SPRETEiJ_G0029753	Rpusd3	75	38.119	ENSEBUG00000015605	RPUSD3	65	38.119	Eptatretus_burgeri
MGP_SPRETEiJ_G0029753	Rpusd3	100	72.965	ENSEASG00005014160	RPUSD3	96	72.965	Equus_asinus_asinus
MGP_SPRETEiJ_G0029753	Rpusd3	100	73.547	ENSECAG00000019988	RPUSD3	96	73.547	Equus_caballus
MGP_SPRETEiJ_G0029753	Rpusd3	95	54.655	ENSEEUG00000007353	RPUSD3	94	54.655	Erinaceus_europaeus
MGP_SPRETEiJ_G0029753	Rpusd3	100	71.221	ENSFCAG00000014199	RPUSD3	98	71.221	Felis_catus
MGP_SPRETEiJ_G0029753	Rpusd3	80	50.542	ENSFALG00000012968	RPUSD3	100	50.542	Ficedula_albicollis
MGP_SPRETEiJ_G0029753	Rpusd3	75	76.617	ENSFDAG00000008350	RPUSD3	85	72.202	Fukomys_damarensis
MGP_SPRETEiJ_G0029753	Rpusd3	75	56.219	ENSGAGG00000007493	RPUSD3	82	54.373	Gopherus_agassizii
MGP_SPRETEiJ_G0029753	Rpusd3	100	72.674	ENSGGOG00000013120	RPUSD3	98	72.674	Gorilla_gorilla
MGP_SPRETEiJ_G0029753	Rpusd3	100	60.411	ENSHGLG00000011722	RPUSD3	100	59.897	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0029753	Rpusd3	100	60.411	ENSHGLG00100016038	RPUSD3	100	59.897	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0029753	Rpusd3	100	70.640	ENSSTOG00000002125	RPUSD3	98	70.640	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0029753	Rpusd3	100	74.627	ENSJJAG00000012679	Rpusd3	100	73.837	Jaculus_jaculus
MGP_SPRETEiJ_G0029753	Rpusd3	96	70.695	ENSLAFG00000017501	RPUSD3	96	70.695	Loxodonta_africana
MGP_SPRETEiJ_G0029753	Rpusd3	100	72.093	ENSMFAG00000032407	RPUSD3	98	72.093	Macaca_fascicularis
MGP_SPRETEiJ_G0029753	Rpusd3	100	68.023	ENSMMUG00000010628	RPUSD3	97	75.321	Macaca_mulatta
MGP_SPRETEiJ_G0029753	Rpusd3	100	72.384	ENSMNEG00000040308	RPUSD3	98	72.384	Macaca_nemestrina
MGP_SPRETEiJ_G0029753	Rpusd3	100	72.384	ENSMLEG00000033940	RPUSD3	98	72.384	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0029753	Rpusd3	100	84.302	ENSMAUG00000015473	Rpusd3	100	84.302	Mesocricetus_auratus
MGP_SPRETEiJ_G0029753	Rpusd3	100	70.930	ENSMICG00000002315	RPUSD3	99	71.681	Microcebus_murinus
MGP_SPRETEiJ_G0029753	Rpusd3	100	83.721	ENSMOCG00000022613	Rpusd3	100	83.721	Microtus_ochrogaster
MGP_SPRETEiJ_G0029753	Rpusd3	90	57.851	ENSMODG00000005210	RPUSD3	79	57.807	Monodelphis_domestica
MGP_SPRETEiJ_G0029753	Rpusd3	100	96.269	MGP_CAROLIEiJ_G0028725	Rpusd3	100	96.269	Mus_caroli
MGP_SPRETEiJ_G0029753	Rpusd3	100	98.256	ENSMUSG00000051169	Rpusd3	100	98.256	Mus_musculus
MGP_SPRETEiJ_G0029753	Rpusd3	100	93.314	MGP_PahariEiJ_G0022476	Rpusd3	100	93.314	Mus_pahari
MGP_SPRETEiJ_G0029753	Rpusd3	100	70.058	ENSMPUG00000017132	RPUSD3	98	70.058	Mustela_putorius_furo
MGP_SPRETEiJ_G0029753	Rpusd3	100	72.384	ENSMLUG00000006135	RPUSD3	99	72.384	Myotis_lucifugus
MGP_SPRETEiJ_G0029753	Rpusd3	99	76.023	ENSNGAG00000023704	Rpusd3	99	76.023	Nannospalax_galili
MGP_SPRETEiJ_G0029753	Rpusd3	96	63.483	ENSNLEG00000004214	RPUSD3	96	70.732	Nomascus_leucogenys
MGP_SPRETEiJ_G0029753	Rpusd3	74	65.327	ENSMEUG00000013098	-	100	63.218	Notamacropus_eugenii
MGP_SPRETEiJ_G0029753	Rpusd3	96	57.704	ENSOPRG00000002300	RPUSD3	94	57.704	Ochotona_princeps
MGP_SPRETEiJ_G0029753	Rpusd3	77	73.106	ENSODEG00000018137	RPUSD3	91	73.106	Octodon_degus
MGP_SPRETEiJ_G0029753	Rpusd3	83	47.887	ENSOANG00000012081	-	99	47.887	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0029753	Rpusd3	100	59.259	ENSOCUG00000027885	RPUSD3	100	59.259	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0029753	Rpusd3	91	74.522	ENSOGAG00000012592	RPUSD3	100	74.522	Otolemur_garnettii
MGP_SPRETEiJ_G0029753	Rpusd3	100	72.674	ENSOARG00000005928	RPUSD3	98	72.674	Ovis_aries
MGP_SPRETEiJ_G0029753	Rpusd3	100	72.965	ENSPPAG00000038083	RPUSD3	98	72.965	Pan_paniscus
MGP_SPRETEiJ_G0029753	Rpusd3	100	71.512	ENSPPRG00000024433	RPUSD3	98	71.512	Panthera_pardus
MGP_SPRETEiJ_G0029753	Rpusd3	100	72.093	ENSPTIG00000006828	RPUSD3	100	72.093	Panthera_tigris_altaica
MGP_SPRETEiJ_G0029753	Rpusd3	100	72.674	ENSPTRG00000051760	RPUSD3	98	72.674	Pan_troglodytes
MGP_SPRETEiJ_G0029753	Rpusd3	100	72.674	ENSPANG00000023885	RPUSD3	98	72.674	Papio_anubis
MGP_SPRETEiJ_G0029753	Rpusd3	100	83.721	ENSPEMG00000017245	Rpusd3	100	83.721	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0029753	Rpusd3	89	62.762	ENSPCIG00000021901	RPUSD3	86	60.667	Phascolarctos_cinereus
MGP_SPRETEiJ_G0029753	Rpusd3	100	72.674	ENSPPYG00000013676	RPUSD3	98	72.674	Pongo_abelii
MGP_SPRETEiJ_G0029753	Rpusd3	99	52.364	ENSPCAG00000013731	-	97	53.381	Procavia_capensis
MGP_SPRETEiJ_G0029753	Rpusd3	96	76.133	ENSPCOG00000018314	RPUSD3	94	76.133	Propithecus_coquereli
MGP_SPRETEiJ_G0029753	Rpusd3	100	71.802	ENSPVAG00000011107	RPUSD3	98	71.802	Pteropus_vampyrus
MGP_SPRETEiJ_G0029753	Rpusd3	100	83.209	ENSRNOG00000009084	Rpusd3	100	83.140	Rattus_norvegicus
MGP_SPRETEiJ_G0029753	Rpusd3	99	73.314	ENSRBIG00000041230	RPUSD3	97	73.314	Rhinopithecus_bieti
MGP_SPRETEiJ_G0029753	Rpusd3	99	73.314	ENSRROG00000043328	RPUSD3	97	73.314	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0029753	Rpusd3	98	71.810	ENSSBOG00000036106	RPUSD3	97	71.810	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0029753	Rpusd3	89	58.824	ENSSHAG00000015536	RPUSD3	97	56.478	Sarcophilus_harrisii
MGP_SPRETEiJ_G0029753	Rpusd3	100	70.640	ENSSSCG00000011555	RPUSD3	98	70.640	Sus_scrofa
MGP_SPRETEiJ_G0029753	Rpusd3	73	51.282	ENSTGUG00000008744	RPUSD3	95	50.901	Taeniopygia_guttata
MGP_SPRETEiJ_G0029753	Rpusd3	99	72.161	ENSTBEG00000000176	RPUSD3	97	72.598	Tupaia_belangeri
MGP_SPRETEiJ_G0029753	Rpusd3	100	71.512	ENSTTRG00000007544	RPUSD3	98	71.512	Tursiops_truncatus
MGP_SPRETEiJ_G0029753	Rpusd3	89	76.569	ENSUAMG00000011354	RPUSD3	94	76.238	Ursus_americanus
MGP_SPRETEiJ_G0029753	Rpusd3	100	72.093	ENSUMAG00000018830	RPUSD3	98	72.093	Ursus_maritimus
MGP_SPRETEiJ_G0029753	Rpusd3	100	72.093	ENSVVUG00000023735	RPUSD3	100	72.093	Vulpes_vulpes
MGP_SPRETEiJ_G0029753	Rpusd3	80	48.372	ENSXETG00000023546	rpusd3	98	47.842	Xenopus_tropicalis