EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0029788 (Gene tree)
Gene ID: -
Gene Symbol: Mbd4
Alias: Med1
Full Name: methyl-CpG binding domain protein 4
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 13588 bases
Position: chr6:115734652-115748239
Accession: 1333850
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0078674	MBD	PF01429.19	1.4e-18	1	1
MGP_SPRETEiJ_P0078670	MBD	PF01429.19	2.2e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0078671	-	2053	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0078670	-	3610	-	MGP_SPRETEiJ_P0078670	553 (aa)	-	-
MGP_SPRETEiJ_T0078673	-	669	-	MGP_SPRETEiJ_P0078673	175 (aa)	-	-
MGP_SPRETEiJ_T0078672	-	2919	-	MGP_SPRETEiJ_P0078672	364 (aa)	-	-
MGP_SPRETEiJ_T0078674	-	2411	-	MGP_SPRETEiJ_P0078674	385 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0029788's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0029788's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0029788	Mbd4	100	65.739	ENSG00000129071	MBD4	98	92.473	Homo_sapiens
MGP_SPRETEiJ_G0029788	Mbd4	87	43.800	ENSAPOG00000021668	mbd4	95	42.857	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0029788	Mbd4	100	65.217	ENSAMEG00000004562	MBD4	99	65.217	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0029788	Mbd4	87	41.897	ENSAOCG00000001157	mbd4	95	42.915	Amphiprion_ocellaris
MGP_SPRETEiJ_G0029788	Mbd4	87	43.548	ENSAPEG00000016131	mbd4	95	43.117	Amphiprion_percula
MGP_SPRETEiJ_G0029788	Mbd4	87	44.898	ENSATEG00000014594	MBD4	86	44.898	Anabas_testudineus
MGP_SPRETEiJ_G0029788	Mbd4	89	42.286	ENSACAG00000014733	MBD4	90	42.286	Anolis_carolinensis
MGP_SPRETEiJ_G0029788	Mbd4	100	60.976	ENSBTAG00000021645	MBD4	100	60.976	Bos_taurus
MGP_SPRETEiJ_G0029788	Mbd4	100	65.217	ENSCJAG00000017293	MBD4	99	65.217	Callithrix_jacchus
MGP_SPRETEiJ_G0029788	Mbd4	100	64.991	ENSCAFG00000004867	MBD4	99	64.991	Canis_familiaris
MGP_SPRETEiJ_G0029788	Mbd4	100	64.991	ENSCAFG00020007082	MBD4	99	64.991	Canis_lupus_dingo
MGP_SPRETEiJ_G0029788	Mbd4	100	62.021	ENSCHIG00000009760	MBD4	100	62.021	Capra_hircus
MGP_SPRETEiJ_G0029788	Mbd4	100	65.217	ENSCCAG00000029796	MBD4	99	65.217	Cebus_capucinus
MGP_SPRETEiJ_G0029788	Mbd4	100	65.559	ENSCATG00000035211	MBD4	99	65.559	Cercocebus_atys
MGP_SPRETEiJ_G0029788	Mbd4	99	64.349	ENSCLAG00000008974	MBD4	99	64.349	Chinchilla_lanigera
MGP_SPRETEiJ_G0029788	Mbd4	100	65.969	ENSCSAG00000009037	MBD4	99	65.969	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0029788	Mbd4	93	47.500	ENSCPBG00000014704	MBD4	96	47.500	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0029788	Mbd4	100	65.909	ENSCANG00000007120	MBD4	99	65.909	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0029788	Mbd4	100	74.735	ENSCGRG00001003507	Mbd4	100	75.442	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0029788	Mbd4	100	74.735	ENSCGRG00000010974	Mbd4	100	75.442	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0029788	Mbd4	100	63.763	ENSDNOG00000049619	MBD4	100	63.763	Dasypus_novemcinctus
MGP_SPRETEiJ_G0029788	Mbd4	91	48.060	ENSDORG00000000902	-	98	57.265	Dipodomys_ordii
MGP_SPRETEiJ_G0029788	Mbd4	100	66.259	ENSEASG00005014800	MBD4	100	66.259	Equus_asinus_asinus
MGP_SPRETEiJ_G0029788	Mbd4	100	66.084	ENSECAG00000022106	MBD4	100	66.084	Equus_caballus
MGP_SPRETEiJ_G0029788	Mbd4	90	61.840	ENSEEUG00000011459	MBD4	94	61.840	Erinaceus_europaeus
MGP_SPRETEiJ_G0029788	Mbd4	100	65.913	ENSFCAG00000000083	MBD4	99	65.913	Felis_catus
MGP_SPRETEiJ_G0029788	Mbd4	83	45.702	ENSFALG00000013663	MBD4	99	45.732	Ficedula_albicollis
MGP_SPRETEiJ_G0029788	Mbd4	87	40.862	ENSGMOG00000013830	mbd4	100	40.862	Gadus_morhua
MGP_SPRETEiJ_G0029788	Mbd4	88	43.487	ENSGAFG00000016011	mbd4	99	44.711	Gambusia_affinis
MGP_SPRETEiJ_G0029788	Mbd4	93	48.370	ENSGAGG00000018644	MBD4	96	48.370	Gopherus_agassizii
MGP_SPRETEiJ_G0029788	Mbd4	98	66.487	ENSGGOG00000010698	MBD4	96	66.487	Gorilla_gorilla
MGP_SPRETEiJ_G0029788	Mbd4	100	64.198	ENSHGLG00000009034	MBD4	100	64.198	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0029788	Mbd4	100	64.198	ENSHGLG00100000135	MBD4	100	64.198	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0029788	Mbd4	100	62.304	ENSSTOG00000020663	MBD4	100	62.304	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0029788	Mbd4	99	63.841	ENSLAFG00000010609	MBD4	99	63.841	Loxodonta_africana
MGP_SPRETEiJ_G0029788	Mbd4	99	65.849	ENSMFAG00000002266	MBD4	99	65.849	Macaca_fascicularis
MGP_SPRETEiJ_G0029788	Mbd4	99	65.679	ENSMMUG00000012723	MBD4	99	65.679	Macaca_mulatta
MGP_SPRETEiJ_G0029788	Mbd4	95	64.168	ENSMNEG00000029752	MBD4	99	64.168	Macaca_nemestrina
MGP_SPRETEiJ_G0029788	Mbd4	100	65.210	ENSMLEG00000024859	MBD4	99	65.210	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0029788	Mbd4	100	65.559	ENSMICG00000008022	MBD4	99	65.559	Microcebus_murinus
MGP_SPRETEiJ_G0029788	Mbd4	100	62.437	ENSMOCG00000002466	-	100	62.437	Microtus_ochrogaster
MGP_SPRETEiJ_G0029788	Mbd4	88	56.548	ENSMODG00000006399	-	99	56.548	Monodelphis_domestica
MGP_SPRETEiJ_G0029788	Mbd4	87	43.313	ENSMALG00000021517	mbd4	86	43.313	Monopterus_albus
MGP_SPRETEiJ_G0029788	Mbd4	100	94.149	MGP_CAROLIEiJ_G0028760	Mbd4	100	94.149	Mus_caroli
MGP_SPRETEiJ_G0029788	Mbd4	100	96.931	ENSMUSG00000030322	Mbd4	100	96.931	Mus_musculus
MGP_SPRETEiJ_G0029788	Mbd4	100	89.065	MGP_PahariEiJ_G0022511	-	100	89.065	Mus_pahari
MGP_SPRETEiJ_G0029788	Mbd4	100	64.747	ENSMPUG00000017195	MBD4	99	64.747	Mustela_putorius_furo
MGP_SPRETEiJ_G0029788	Mbd4	94	69.216	ENSMLUG00000014766	MBD4	98	69.216	Myotis_lucifugus
MGP_SPRETEiJ_G0029788	Mbd4	100	65.854	ENSNLEG00000005337	MBD4	99	65.854	Nomascus_leucogenys
MGP_SPRETEiJ_G0029788	Mbd4	100	58.844	ENSOPRG00000000473	MBD4	99	58.844	Ochotona_princeps
MGP_SPRETEiJ_G0029788	Mbd4	87	44.490	ENSONIG00000017212	mbd4	100	44.490	Oreochromis_niloticus
MGP_SPRETEiJ_G0029788	Mbd4	82	38.580	ENSOANG00000004589	-	97	42.955	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0029788	Mbd4	100	58.681	ENSOCUG00000013006	MBD4	99	58.681	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0029788	Mbd4	87	43.936	ENSORLG00000011049	mbd4	99	44.758	Oryzias_latipes
MGP_SPRETEiJ_G0029788	Mbd4	87	43.340	ENSORLG00020020013	mbd4	99	44.828	Oryzias_latipes_hni
MGP_SPRETEiJ_G0029788	Mbd4	87	43.287	ENSORLG00015015342	mbd4	98	44.785	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0029788	Mbd4	100	63.139	ENSOGAG00000010236	MBD4	100	63.139	Otolemur_garnettii
MGP_SPRETEiJ_G0029788	Mbd4	100	62.369	ENSOARG00000014699	MBD4	100	62.369	Ovis_aries
MGP_SPRETEiJ_G0029788	Mbd4	100	65.331	ENSPPAG00000036528	MBD4	99	65.331	Pan_paniscus
MGP_SPRETEiJ_G0029788	Mbd4	100	65.331	ENSPPRG00000016480	MBD4	99	65.331	Panthera_pardus
MGP_SPRETEiJ_G0029788	Mbd4	100	65.565	ENSPTRG00000015377	MBD4	99	65.565	Pan_troglodytes
MGP_SPRETEiJ_G0029788	Mbd4	100	65.794	ENSPANG00000015047	MBD4	99	65.794	Papio_anubis
MGP_SPRETEiJ_G0029788	Mbd4	93	48.592	ENSPSIG00000007892	MBD4	95	48.592	Pelodiscus_sinensis
MGP_SPRETEiJ_G0029788	Mbd4	94	72.243	ENSPEMG00000006226	Mbd4	99	72.624	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0029788	Mbd4	91	53.700	ENSPCIG00000002276	-	98	53.700	Phascolarctos_cinereus
MGP_SPRETEiJ_G0029788	Mbd4	87	43.564	ENSPFOG00000014471	mbd4	98	45.214	Poecilia_formosa
MGP_SPRETEiJ_G0029788	Mbd4	100	65.096	ENSPPYG00000013417	MBD4	99	65.096	Pongo_abelii
MGP_SPRETEiJ_G0029788	Mbd4	95	60.000	ENSPCAG00000012915	MBD4	99	60.182	Procavia_capensis
MGP_SPRETEiJ_G0029788	Mbd4	100	67.247	ENSPVAG00000005238	MBD4	99	67.247	Pteropus_vampyrus
MGP_SPRETEiJ_G0029788	Mbd4	100	81.019	ENSRNOG00000010919	Mbd4	100	81.019	Rattus_norvegicus
MGP_SPRETEiJ_G0029788	Mbd4	100	65.559	ENSRBIG00000027722	MBD4	99	65.559	Rhinopithecus_bieti
MGP_SPRETEiJ_G0029788	Mbd4	100	65.385	ENSRROG00000029136	MBD4	99	65.385	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0029788	Mbd4	100	65.391	ENSSBOG00000016810	MBD4	99	65.391	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0029788	Mbd4	96	52.995	ENSSHAG00000012953	MBD4	96	52.995	Sarcophilus_harrisii
MGP_SPRETEiJ_G0029788	Mbd4	90	43.750	ENSSFOG00015016292	mbd4	97	43.750	Scleropages_formosus
MGP_SPRETEiJ_G0029788	Mbd4	87	44.990	ENSSDUG00000001365	mbd4	93	44.990	Seriola_dumerili
MGP_SPRETEiJ_G0029788	Mbd4	76	40.698	ENSSLDG00000010295	MBD4	80	40.698	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0029788	Mbd4	82	57.082	ENSSARG00000004496	-	80	57.082	Sorex_araneus
MGP_SPRETEiJ_G0029788	Mbd4	87	47.554	ENSSPUG00000017344	MBD4	91	47.554	Sphenodon_punctatus
MGP_SPRETEiJ_G0029788	Mbd4	100	65.278	ENSSSCG00000033303	MBD4	100	65.278	Sus_scrofa
MGP_SPRETEiJ_G0029788	Mbd4	87	43.852	ENSTRUG00000010124	mbd4	95	43.852	Takifugu_rubripes
MGP_SPRETEiJ_G0029788	Mbd4	87	42.829	ENSTNIG00000017927	mbd4	100	42.829	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0029788	Mbd4	86	62.385	ENSTBEG00000003041	-	85	62.385	Tupaia_belangeri
MGP_SPRETEiJ_G0029788	Mbd4	96	66.484	ENSTTRG00000011265	MBD4	98	66.484	Tursiops_truncatus
MGP_SPRETEiJ_G0029788	Mbd4	88	69.461	ENSUAMG00000000814	MBD4	99	69.461	Ursus_americanus
MGP_SPRETEiJ_G0029788	Mbd4	100	65.913	ENSUMAG00000017542	MBD4	100	65.913	Ursus_maritimus
MGP_SPRETEiJ_G0029788	Mbd4	65	64.744	ENSVPAG00000004040	-	66	64.744	Vicugna_pacos
MGP_SPRETEiJ_G0029788	Mbd4	100	64.767	ENSVVUG00000014222	MBD4	99	64.767	Vulpes_vulpes
MGP_SPRETEiJ_G0029788	Mbd4	87	44.444	ENSXMAG00000021129	mbd4	98	45.257	Xiphophorus_maculatus