EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0029857 (Gene tree)
Gene ID: -
Gene Symbol: Apobec1
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme%2C catalytic polypeptide 1
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 30185 bases
Position: chr6:122281618-122311802
Accession: 103298
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0079074	APOBEC_N	PF08210.11	8.4e-30	1	1
MGP_SPRETEiJ_P0079075	APOBEC_N	PF08210.11	8.4e-30	1	1
MGP_SPRETEiJ_P0079076	APOBEC_N	PF08210.11	8.4e-30	1	1
MGP_SPRETEiJ_P0079077	APOBEC_N	PF08210.11	4.2e-17	1	1
MGP_SPRETEiJ_P0079078	APOBEC_N	PF08210.11	3.1e-13	1	1
MGP_SPRETEiJ_P0079074	APOBEC_C	PF05240.14	1.8e-22	1	1
MGP_SPRETEiJ_P0079075	APOBEC_C	PF05240.14	1.8e-22	1	1
MGP_SPRETEiJ_P0079076	APOBEC_C	PF05240.14	1.8e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0079074	-	2216	-	MGP_SPRETEiJ_P0079074	229 (aa)	-	UPI0000029449
MGP_SPRETEiJ_T0079075	-	2022	-	MGP_SPRETEiJ_P0079075	229 (aa)	-	UPI0000029449
MGP_SPRETEiJ_T0079076	-	2077	-	MGP_SPRETEiJ_P0079076	229 (aa)	-	UPI0000029449
MGP_SPRETEiJ_T0079077	-	666	-	MGP_SPRETEiJ_P0079077	121 (aa)	-	UPI0006A69FA4
MGP_SPRETEiJ_T0079081	-	564	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0079080	-	360	-	MGP_SPRETEiJ_P0079080	25 (aa)	-	UPI00015AA440
MGP_SPRETEiJ_T0079082	-	524	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0079078	-	779	-	MGP_SPRETEiJ_P0079078	113 (aa)	-	UPI0006A69F62
MGP_SPRETEiJ_T0079079	-	372	-	MGP_SPRETEiJ_P0079079	43 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0029857's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0029857's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0029857	Apobec1	56	39.706	MGP_SPRETEiJ_G0029856	Aicda	53	41.509
MGP_SPRETEiJ_G0029857	Apobec1	74	34.737	MGP_SPRETEiJ_G0020927	Apobec3	84	38.028

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0029857	Apobec1	99	71.429	ENSG00000111701	APOBEC1	97	71.053	Homo_sapiens
MGP_SPRETEiJ_G0029857	Apobec1	99	67.982	ENSAMEG00000007098	APOBEC1	97	67.982	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0029857	Apobec1	86	50.476	ENSACAG00000028578	-	93	44.444	Anolis_carolinensis
MGP_SPRETEiJ_G0029857	Apobec1	99	69.298	ENSANAG00000027743	APOBEC1	92	69.298	Aotus_nancymaae
MGP_SPRETEiJ_G0029857	Apobec1	99	67.105	ENSBTAG00000014683	APOBEC1	97	67.105	Bos_taurus
MGP_SPRETEiJ_G0029857	Apobec1	93	69.014	ENSCJAG00000005398	APOBEC1	96	69.014	Callithrix_jacchus
MGP_SPRETEiJ_G0029857	Apobec1	99	71.053	ENSCAFG00000013901	APOBEC1	97	71.053	Canis_familiaris
MGP_SPRETEiJ_G0029857	Apobec1	95	70.642	ENSCAFG00020003511	APOBEC1	91	70.642	Canis_lupus_dingo
MGP_SPRETEiJ_G0029857	Apobec1	99	65.351	ENSCHIG00000011898	APOBEC1	95	65.351	Capra_hircus
MGP_SPRETEiJ_G0029857	Apobec1	94	73.585	ENSTSYG00000029141	APOBEC1	100	71.631	Carlito_syrichta
MGP_SPRETEiJ_G0029857	Apobec1	93	63.380	ENSCAPG00000015882	-	99	63.380	Cavia_aperea
MGP_SPRETEiJ_G0029857	Apobec1	99	63.333	ENSCPOG00000033068	APOBEC1	97	62.281	Cavia_porcellus
MGP_SPRETEiJ_G0029857	Apobec1	99	69.737	ENSCCAG00000022258	APOBEC1	97	69.737	Cebus_capucinus
MGP_SPRETEiJ_G0029857	Apobec1	99	70.614	ENSCATG00000021613	APOBEC1	92	70.614	Cercocebus_atys
MGP_SPRETEiJ_G0029857	Apobec1	99	62.719	ENSCLAG00000014645	APOBEC1	99	62.719	Chinchilla_lanigera
MGP_SPRETEiJ_G0029857	Apobec1	78	70.391	ENSCSAG00000009817	APOBEC1	94	70.391	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0029857	Apobec1	89	40.179	ENSCPBG00000017398	-	79	43.017	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0029857	Apobec1	88	53.000	ENSCPBG00000014329	-	54	46.429	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0029857	Apobec1	95	39.655	ENSCPBG00000014327	-	83	37.850	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0029857	Apobec1	86	45.714	ENSCPBG00000014328	-	89	42.365	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0029857	Apobec1	86	48.571	ENSCPBG00000014331	-	84	42.857	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0029857	Apobec1	98	49.167	ENSCPBG00000014335	-	76	49.733	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0029857	Apobec1	97	70.721	ENSCANG00000038359	APOBEC1	97	70.721	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0029857	Apobec1	100	83.471	ENSCGRG00001011130	Apobec1	99	82.895	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0029857	Apobec1	100	83.471	ENSCGRG00000008644	Apobec1	99	82.895	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0029857	Apobec1	100	71.074	ENSDNOG00000010926	APOBEC1	97	69.737	Dasypus_novemcinctus
MGP_SPRETEiJ_G0029857	Apobec1	93	63.551	ENSDORG00000023717	Apobec1	100	63.551	Dipodomys_ordii
MGP_SPRETEiJ_G0029857	Apobec1	99	67.686	ENSETEG00000004867	APOBEC1	97	67.686	Echinops_telfairi
MGP_SPRETEiJ_G0029857	Apobec1	99	71.053	ENSEASG00005015951	APOBEC1	96	71.053	Equus_asinus_asinus
MGP_SPRETEiJ_G0029857	Apobec1	79	70.718	ENSECAG00000017163	APOBEC1	95	70.718	Equus_caballus
MGP_SPRETEiJ_G0029857	Apobec1	88	65.421	ENSEEUG00000009112	-	92	62.802	Erinaceus_europaeus
MGP_SPRETEiJ_G0029857	Apobec1	88	64.151	ENSEEUG00000007530	-	97	50.980	Erinaceus_europaeus
MGP_SPRETEiJ_G0029857	Apobec1	99	71.429	ENSFCAG00000009350	APOBEC1	97	71.053	Felis_catus
MGP_SPRETEiJ_G0029857	Apobec1	87	49.524	ENSFALG00000007257	-	70	51.408	Ficedula_albicollis
MGP_SPRETEiJ_G0029857	Apobec1	87	55.000	ENSFDAG00000018470	APOBEC1	96	55.000	Fukomys_damarensis
MGP_SPRETEiJ_G0029857	Apobec1	86	52.041	ENSGAGG00000004947	-	86	47.399	Gopherus_agassizii
MGP_SPRETEiJ_G0029857	Apobec1	90	50.000	ENSGAGG00000011837	-	84	55.652	Gopherus_agassizii
MGP_SPRETEiJ_G0029857	Apobec1	86	40.000	ENSGAGG00000006624	-	66	42.077	Gopherus_agassizii
MGP_SPRETEiJ_G0029857	Apobec1	86	41.905	ENSGAGG00000021745	-	64	42.529	Gopherus_agassizii
MGP_SPRETEiJ_G0029857	Apobec1	86	40.952	ENSGAGG00000021744	-	71	43.889	Gopherus_agassizii
MGP_SPRETEiJ_G0029857	Apobec1	99	60.833	ENSHGLG00000001495	APOBEC1	97	60.088	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0029857	Apobec1	99	59.211	ENSHGLG00100002187	APOBEC1	97	59.211	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0029857	Apobec1	88	70.755	ENSSTOG00000021971	APOBEC1	99	72.165	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0029857	Apobec1	99	70.175	ENSJJAG00000022108	Apobec1	99	70.175	Jaculus_jaculus
MGP_SPRETEiJ_G0029857	Apobec1	94	69.767	ENSLAFG00000030837	APOBEC1	96	69.767	Loxodonta_africana
MGP_SPRETEiJ_G0029857	Apobec1	99	70.614	ENSMFAG00000000277	APOBEC1	97	70.614	Macaca_fascicularis
MGP_SPRETEiJ_G0029857	Apobec1	99	70.175	ENSMNEG00000029670	APOBEC1	97	70.175	Macaca_nemestrina
MGP_SPRETEiJ_G0029857	Apobec1	99	70.614	ENSMLEG00000036301	APOBEC1	97	70.614	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0029857	Apobec1	97	80.995	ENSMAUG00000022167	Apobec1	99	80.995	Mesocricetus_auratus
MGP_SPRETEiJ_G0029857	Apobec1	99	70.614	ENSMICG00000043645	APOBEC1	97	70.614	Microcebus_murinus
MGP_SPRETEiJ_G0029857	Apobec1	100	82.301	ENSMOCG00000016170	-	100	82.301	Microtus_ochrogaster
MGP_SPRETEiJ_G0029857	Apobec1	99	66.071	ENSMODG00000018004	APOBEC1	97	64.912	Monodelphis_domestica
MGP_SPRETEiJ_G0029857	Apobec1	100	100.000	ENSMUSG00000040613	Apobec1	100	100.000	Mus_musculus
MGP_SPRETEiJ_G0029857	Apobec1	100	95.197	MGP_PahariEiJ_G0022580	-	100	95.197	Mus_pahari
MGP_SPRETEiJ_G0029857	Apobec1	99	71.429	ENSMPUG00000017532	APOBEC1	97	69.737	Mustela_putorius_furo
MGP_SPRETEiJ_G0029857	Apobec1	99	75.877	ENSNGAG00000022607	Apobec1	99	75.877	Nannospalax_galili
MGP_SPRETEiJ_G0029857	Apobec1	99	70.175	ENSNLEG00000005342	APOBEC1	97	70.175	Nomascus_leucogenys
MGP_SPRETEiJ_G0029857	Apobec1	100	62.832	ENSMEUG00000013406	APOBEC1	97	60.526	Notamacropus_eugenii
MGP_SPRETEiJ_G0029857	Apobec1	95	58.261	ENSOPRG00000009508	-	100	56.906	Ochotona_princeps
MGP_SPRETEiJ_G0029857	Apobec1	86	61.856	ENSODEG00000001157	-	99	61.856	Octodon_degus
MGP_SPRETEiJ_G0029857	Apobec1	99	70.536	ENSOCUG00000025736	APOBEC1	85	68.860	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0029857	Apobec1	99	70.614	ENSOGAG00000026415	APOBEC1	97	70.614	Otolemur_garnettii
MGP_SPRETEiJ_G0029857	Apobec1	100	64.463	ENSOARG00000002072	APOBEC1	95	65.351	Ovis_aries
MGP_SPRETEiJ_G0029857	Apobec1	99	65.351	ENSPPAG00000027657	APOBEC1	96	65.351	Pan_paniscus
MGP_SPRETEiJ_G0029857	Apobec1	99	71.491	ENSPPRG00000012182	APOBEC1	97	71.491	Panthera_pardus
MGP_SPRETEiJ_G0029857	Apobec1	99	71.491	ENSPTIG00000020280	APOBEC1	97	71.491	Panthera_tigris_altaica
MGP_SPRETEiJ_G0029857	Apobec1	99	70.614	ENSPTRG00000004614	APOBEC1	97	70.614	Pan_troglodytes
MGP_SPRETEiJ_G0029857	Apobec1	99	71.053	ENSPANG00000021027	APOBEC1	97	71.053	Papio_anubis
MGP_SPRETEiJ_G0029857	Apobec1	50	53.704	ENSPSIG00000012791	-	72	48.624	Pelodiscus_sinensis
MGP_SPRETEiJ_G0029857	Apobec1	98	38.333	ENSPSIG00000012568	-	81	42.473	Pelodiscus_sinensis
MGP_SPRETEiJ_G0029857	Apobec1	100	82.645	ENSPEMG00000023841	Apobec1	99	83.333	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0029857	Apobec1	99	66.071	ENSPCIG00000023973	APOBEC1	97	64.912	Phascolarctos_cinereus
MGP_SPRETEiJ_G0029857	Apobec1	99	70.175	ENSPPYG00000004228	APOBEC1	92	70.175	Pongo_abelii
MGP_SPRETEiJ_G0029857	Apobec1	99	71.429	ENSPCAG00000008733	APOBEC1	100	68.984	Procavia_capensis
MGP_SPRETEiJ_G0029857	Apobec1	93	70.561	ENSPCOG00000013957	APOBEC1	95	70.561	Propithecus_coquereli
MGP_SPRETEiJ_G0029857	Apobec1	99	68.750	ENSPVAG00000010709	APOBEC1	97	53.947	Pteropus_vampyrus
MGP_SPRETEiJ_G0029857	Apobec1	100	94.215	ENSRNOG00000015411	Apobec1	100	91.703	Rattus_norvegicus
MGP_SPRETEiJ_G0029857	Apobec1	99	70.175	ENSRBIG00000031161	APOBEC1	97	70.175	Rhinopithecus_bieti
MGP_SPRETEiJ_G0029857	Apobec1	99	70.175	ENSRROG00000033576	APOBEC1	97	70.175	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0029857	Apobec1	87	69.388	ENSSBOG00000030587	APOBEC1	98	69.942	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0029857	Apobec1	95	63.303	ENSSHAG00000008925	APOBEC1	96	63.303	Sarcophilus_harrisii
MGP_SPRETEiJ_G0029857	Apobec1	87	69.524	ENSSARG00000011972	-	98	69.767	Sorex_araneus
MGP_SPRETEiJ_G0029857	Apobec1	87	65.714	ENSSARG00000000032	-	100	63.953	Sorex_araneus
MGP_SPRETEiJ_G0029857	Apobec1	91	46.903	ENSSPUG00000009044	-	79	46.411	Sphenodon_punctatus
MGP_SPRETEiJ_G0029857	Apobec1	99	70.614	ENSSSCG00000000668	APOBEC1	97	70.614	Sus_scrofa
MGP_SPRETEiJ_G0029857	Apobec1	88	50.467	ENSTGUG00000013118	-	100	54.110	Taeniopygia_guttata
MGP_SPRETEiJ_G0029857	Apobec1	93	69.014	ENSTBEG00000010043	APOBEC1	90	69.014	Tupaia_belangeri
MGP_SPRETEiJ_G0029857	Apobec1	100	63.717	ENSTTRG00000014015	APOBEC1	100	66.845	Tursiops_truncatus
MGP_SPRETEiJ_G0029857	Apobec1	99	67.982	ENSUAMG00000011636	APOBEC1	93	67.982	Ursus_americanus
MGP_SPRETEiJ_G0029857	Apobec1	99	67.982	ENSUMAG00000016552	APOBEC1	93	67.982	Ursus_maritimus
MGP_SPRETEiJ_G0029857	Apobec1	99	68.750	ENSVPAG00000001343	APOBEC1	97	66.667	Vicugna_pacos
MGP_SPRETEiJ_G0029857	Apobec1	99	71.053	ENSVVUG00000010522	APOBEC1	97	71.053	Vulpes_vulpes