EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0029994 (Gene tree)
Gene ID: -
Gene Symbol: Ybx3
Alias: Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR
Full Name: Y box protein 3
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 23587 bases
Position: chr6:131958960-131982546
Accession: 2137670
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0079633	CSD	PF00313.22	3.8e-26	1	1
MGP_SPRETEiJ_P0079632	CSD	PF00313.22	6.7e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0079632	-	1683	-	MGP_SPRETEiJ_P0079632	292 (aa)	-	UPI000A314E26
MGP_SPRETEiJ_T0079633	-	1852	-	MGP_SPRETEiJ_P0079633	361 (aa)	-	-
MGP_SPRETEiJ_T0079636	-	749	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0079634	-	841	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0079635	-	1034	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0029994's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0029994's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0029994	Ybx3	83	50.000	MGP_SPRETEiJ_G0027373	Ybx1	90	57.143

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0029994	Ybx3	100	84.140	ENSG00000060138	YBX3	91	97.619	Homo_sapiens
MGP_SPRETEiJ_G0029994	Ybx3	96	85.511	ENSAMEG00000009393	YBX3	89	90.705	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0029994	Ybx3	73	98.077	ENSAPLG00000003147	YBX3	76	98.077	Anas_platyrhynchos
MGP_SPRETEiJ_G0029994	Ybx3	86	86.834	ENSANAG00000024492	-	100	89.557	Aotus_nancymaae
MGP_SPRETEiJ_G0029994	Ybx3	100	64.452	ENSANAG00000033366	-	77	78.049	Aotus_nancymaae
MGP_SPRETEiJ_G0029994	Ybx3	100	83.421	ENSBTAG00000009663	YBX3	83	87.220	Bos_taurus
MGP_SPRETEiJ_G0029994	Ybx3	100	84.097	ENSCJAG00000021660	-	86	88.679	Callithrix_jacchus
MGP_SPRETEiJ_G0029994	Ybx3	96	66.549	ENSCJAG00000033824	-	88	84.810	Callithrix_jacchus
MGP_SPRETEiJ_G0029994	Ybx3	79	93.380	ENSCAFG00000013401	YBX3	100	94.009	Canis_familiaris
MGP_SPRETEiJ_G0029994	Ybx3	100	82.133	ENSCAFG00020006412	YBX3	84	89.241	Canis_lupus_dingo
MGP_SPRETEiJ_G0029994	Ybx3	100	83.421	ENSCHIG00000010863	YBX3	88	90.096	Capra_hircus
MGP_SPRETEiJ_G0029994	Ybx3	79	93.380	ENSTSYG00000004204	-	96	88.571	Carlito_syrichta
MGP_SPRETEiJ_G0029994	Ybx3	100	73.737	ENSTSYG00000035821	-	72	95.745	Carlito_syrichta
MGP_SPRETEiJ_G0029994	Ybx3	79	88.462	ENSCAPG00000015039	YBX3	93	88.462	Cavia_aperea
MGP_SPRETEiJ_G0029994	Ybx3	81	89.420	ENSCPOG00000011329	YBX3	92	87.859	Cavia_porcellus
MGP_SPRETEiJ_G0029994	Ybx3	100	83.871	ENSCCAG00000016469	YBX3	85	88.679	Cebus_capucinus
MGP_SPRETEiJ_G0029994	Ybx3	100	83.914	ENSCATG00000034411	YBX3	85	88.994	Cercocebus_atys
MGP_SPRETEiJ_G0029994	Ybx3	79	89.510	ENSCLAG00000016030	YBX3	94	89.510	Chinchilla_lanigera
MGP_SPRETEiJ_G0029994	Ybx3	100	83.646	ENSCSAG00000008744	YBX3	85	88.679	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0029994	Ybx3	94	76.301	ENSCHOG00000011988	YBX3	56	95.745	Choloepus_hoffmanni
MGP_SPRETEiJ_G0029994	Ybx3	80	79.381	ENSCPBG00000014147	YBX3	78	86.957	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0029994	Ybx3	57	56.818	ENSCING00000010654	yb1/2/3	73	54.673	Ciona_intestinalis
MGP_SPRETEiJ_G0029994	Ybx3	81	90.169	ENSCANG00000036801	YBX3	100	88.889	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0029994	Ybx3	100	98.061	ENSCGRG00001016148	Ybx3	100	98.061	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0029994	Ybx3	79	96.540	ENSCGRG00000004563	Ybx3	98	96.540	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0029994	Ybx3	91	82.675	ENSDORG00000009103	Ybx3	89	85.397	Dipodomys_ordii
MGP_SPRETEiJ_G0029994	Ybx3	78	83.158	ENSETEG00000002557	YBX3	99	82.394	Echinops_telfairi
MGP_SPRETEiJ_G0029994	Ybx3	100	81.843	ENSEASG00005014726	YBX3	100	84.282	Equus_asinus_asinus
MGP_SPRETEiJ_G0029994	Ybx3	100	84.824	ENSECAG00000013777	YBX3	100	87.263	Equus_caballus
MGP_SPRETEiJ_G0029994	Ybx3	78	90.141	ENSEEUG00000010415	YBX3	100	91.549	Erinaceus_europaeus
MGP_SPRETEiJ_G0029994	Ybx3	100	84.987	ENSFCAG00000027748	YBX3	85	91.483	Felis_catus
MGP_SPRETEiJ_G0029994	Ybx3	73	94.444	ENSFALG00000003661	YBX3	71	98.837	Ficedula_albicollis
MGP_SPRETEiJ_G0029994	Ybx3	79	85.664	ENSFDAG00000021192	YBX3	92	85.664	Fukomys_damarensis
MGP_SPRETEiJ_G0029994	Ybx3	91	71.852	ENSGALG00000031890	YBX3	78	86.087	Gallus_gallus
MGP_SPRETEiJ_G0029994	Ybx3	91	73.881	ENSGAGG00000017780	YBX3	78	88.596	Gopherus_agassizii
MGP_SPRETEiJ_G0029994	Ybx3	100	83.914	ENSGGOG00000001352	YBX3	85	88.994	Gorilla_gorilla
MGP_SPRETEiJ_G0029994	Ybx3	75	80.882	ENSHGLG00000015495	-	87	79.592	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0029994	Ybx3	83	77.632	ENSHGLG00000014798	-	90	80.000	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0029994	Ybx3	74	91.284	ENSHGLG00100003589	YBX3	87	91.284	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0029994	Ybx3	93	84.706	ENSSTOG00000032577	-	87	85.897	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0029994	Ybx3	79	87.324	ENSSTOG00000002108	-	88	87.324	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0029994	Ybx3	81	71.088	ENSJJAG00000014239	Ybx3	100	85.417	Jaculus_jaculus
MGP_SPRETEiJ_G0029994	Ybx3	100	87.263	ENSLAFG00000017247	YBX3	94	86.392	Loxodonta_africana
MGP_SPRETEiJ_G0029994	Ybx3	100	83.871	ENSMFAG00000039369	YBX3	85	88.679	Macaca_fascicularis
MGP_SPRETEiJ_G0029994	Ybx3	88	85.846	ENSMMUG00000022469	YBX3	98	88.679	Macaca_mulatta
MGP_SPRETEiJ_G0029994	Ybx3	100	83.602	ENSMNEG00000045109	YBX3	85	88.679	Macaca_nemestrina
MGP_SPRETEiJ_G0029994	Ybx3	93	82.301	ENSMLEG00000033618	YBX3	81	91.958	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0029994	Ybx3	72	98.095	ENSMGAG00000014224	YBX3	93	100.000	Meleagris_gallopavo
MGP_SPRETEiJ_G0029994	Ybx3	88	97.492	ENSMAUG00000012185	Ybx3	100	97.492	Mesocricetus_auratus
MGP_SPRETEiJ_G0029994	Ybx3	100	85.405	ENSMICG00000038002	-	85	92.089	Microcebus_murinus
MGP_SPRETEiJ_G0029994	Ybx3	100	74.150	ENSMICG00000031459	-	85	76.543	Microcebus_murinus
MGP_SPRETEiJ_G0029994	Ybx3	86	96.440	ENSMOCG00000016291	Ybx3	100	98.298	Microtus_ochrogaster
MGP_SPRETEiJ_G0029994	Ybx3	78	84.266	ENSMODG00000018248	YBX3	91	83.972	Monodelphis_domestica
MGP_SPRETEiJ_G0029994	Ybx3	100	100.000	MGP_CAROLIEiJ_G0028947	Ybx3	100	100.000	Mus_caroli
MGP_SPRETEiJ_G0029994	Ybx3	100	99.723	ENSMUSG00000030189	Ybx3	100	99.723	Mus_musculus
MGP_SPRETEiJ_G0029994	Ybx3	100	99.723	MGP_PahariEiJ_G0022709	Ybx3	100	99.723	Mus_pahari
MGP_SPRETEiJ_G0029994	Ybx3	100	70.000	ENSMPUG00000011810	YBX3	85	75.385	Mustela_putorius_furo
MGP_SPRETEiJ_G0029994	Ybx3	73	90.335	ENSMLUG00000007476	YBX3	100	90.335	Myotis_lucifugus
MGP_SPRETEiJ_G0029994	Ybx3	81	90.476	ENSNGAG00000000710	Ybx3	100	87.398	Nannospalax_galili
MGP_SPRETEiJ_G0029994	Ybx3	87	83.801	ENSNLEG00000034844	YBX3	90	85.220	Nomascus_leucogenys
MGP_SPRETEiJ_G0029994	Ybx3	87	81.818	ENSODEG00000017957	YBX3	93	83.861	Octodon_degus
MGP_SPRETEiJ_G0029994	Ybx3	81	88.435	ENSOCUG00000001889	YBX3	88	88.079	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0029994	Ybx3	100	85.676	ENSOGAG00000013245	YBX3	86	90.402	Otolemur_garnettii
MGP_SPRETEiJ_G0029994	Ybx3	71	97.938	ENSOARG00000020919	YBX3	99	80.936	Ovis_aries
MGP_SPRETEiJ_G0029994	Ybx3	100	81.370	ENSPPAG00000039068	YBX3	82	91.892	Pan_paniscus
MGP_SPRETEiJ_G0029994	Ybx3	100	85.255	ENSPPRG00000005859	YBX3	85	91.798	Panthera_pardus
MGP_SPRETEiJ_G0029994	Ybx3	78	94.014	ENSPTIG00000005322	YBX3	81	93.706	Panthera_tigris_altaica
MGP_SPRETEiJ_G0029994	Ybx3	100	83.690	ENSPTRG00000004681	YBX3	85	88.994	Pan_troglodytes
MGP_SPRETEiJ_G0029994	Ybx3	100	84.140	ENSPANG00000010280	YBX3	85	88.994	Papio_anubis
MGP_SPRETEiJ_G0029994	Ybx3	73	84.186	ENSPSIG00000009247	YBX3	100	84.186	Pelodiscus_sinensis
MGP_SPRETEiJ_G0029994	Ybx3	88	97.785	ENSPEMG00000012132	-	100	97.785	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0029994	Ybx3	83	97.095	ENSPEMG00000010391	-	92	97.095	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0029994	Ybx3	71	83.012	ENSPCIG00000029949	YBX3	100	83.012	Phascolarctos_cinereus
MGP_SPRETEiJ_G0029994	Ybx3	100	84.097	ENSPPYG00000004279	YBX3	100	85.175	Pongo_abelii
MGP_SPRETEiJ_G0029994	Ybx3	78	85.069	ENSPCAG00000001397	YBX3	100	87.153	Procavia_capensis
MGP_SPRETEiJ_G0029994	Ybx3	51	91.257	ENSPCOG00000011663	YBX3	80	87.805	Propithecus_coquereli
MGP_SPRETEiJ_G0029994	Ybx3	82	78.667	ENSPVAG00000006740	YBX3	85	78.233	Pteropus_vampyrus
MGP_SPRETEiJ_G0029994	Ybx3	100	98.892	ENSRNOG00000005480	Ybx3	100	98.892	Rattus_norvegicus
MGP_SPRETEiJ_G0029994	Ybx3	100	83.827	ENSRBIG00000039208	YBX3	100	84.367	Rhinopithecus_bieti
MGP_SPRETEiJ_G0029994	Ybx3	100	83.827	ENSRROG00000029638	YBX3	100	84.906	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0029994	Ybx3	100	77.898	ENSSBOG00000030573	YBX3	86	90.378	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0029994	Ybx3	66	98.837	ENSSHAG00000003262	YBX3	98	83.849	Sarcophilus_harrisii
MGP_SPRETEiJ_G0029994	Ybx3	91	86.257	ENSSSCG00000000633	YBX3	84	90.938	Sus_scrofa
MGP_SPRETEiJ_G0029994	Ybx3	72	97.143	ENSTGUG00000012047	YBX3	75	97.143	Taeniopygia_guttata
MGP_SPRETEiJ_G0029994	Ybx3	100	80.926	ENSTBEG00000012570	YBX3	83	91.030	Tupaia_belangeri
MGP_SPRETEiJ_G0029994	Ybx3	72	82.707	ENSTTRG00000008045	YBX3	100	83.835	Tursiops_truncatus
MGP_SPRETEiJ_G0029994	Ybx3	76	89.892	ENSUAMG00000016662	YBX3	100	89.892	Ursus_americanus
MGP_SPRETEiJ_G0029994	Ybx3	78	93.310	ENSUMAG00000016118	YBX3	94	93.007	Ursus_maritimus
MGP_SPRETEiJ_G0029994	Ybx3	59	100.000	ENSVPAG00000000876	YBX3	100	70.423	Vicugna_pacos
MGP_SPRETEiJ_G0029994	Ybx3	76	89.531	ENSVVUG00000004956	YBX3	100	89.892	Vulpes_vulpes
MGP_SPRETEiJ_G0029994	Ybx3	74	72.727	ENSXETG00000016239	ybx3	86	82.857	Xenopus_tropicalis