EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0030812 (Gene tree)
Gene ID: -
Gene Symbol: Snrnp70
Alias: 2700022N21Rik|3200002N22Rik|Rnulp70|Snrp70|Srnp70|U1-70
Full Name: small nuclear ribonucleoprotein 70 (U1)
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 27092 bases
Position: chr7:33217984-33245075
Accession: 98341
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0082830	RRM_1	PF00076.22	1.1e-17	1	1
MGP_SPRETEiJ_P0082840	RRM_1	PF00076.22	4.1e-13	1	1
MGP_SPRETEiJ_P0082832	RRM_1	PF00076.22	2.2e-08	1	1
MGP_SPRETEiJ_P0082842	U1snRNP70_N	PF12220.8	5.6e-29	1	1
MGP_SPRETEiJ_P0082840	U1snRNP70_N	PF12220.8	1.5e-28	1	1
MGP_SPRETEiJ_P0082830	U1snRNP70_N	PF12220.8	2e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0082836	-	2925	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0082837	-	732	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0082834	-	3035	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0082835	-	707	-	MGP_SPRETEiJ_P0082835	115 (aa)	-	-
MGP_SPRETEiJ_T0082832	-	451	-	MGP_SPRETEiJ_P0082832	86 (aa)	-	UPI000719A2D0
MGP_SPRETEiJ_T0082833	-	4006	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0082830	-	1735	-	MGP_SPRETEiJ_P0082830	448 (aa)	-	UPI0000357822
MGP_SPRETEiJ_T0082831	-	1269	-	MGP_SPRETEiJ_P0082831	356 (aa)	-	-
MGP_SPRETEiJ_T0082838	-	621	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0082839	-	616	-	MGP_SPRETEiJ_P0082839	111 (aa)	-	UPI000719A39A
MGP_SPRETEiJ_T0082845	-	579	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0082844	-	1673	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0082843	-	212	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0082842	-	620	-	MGP_SPRETEiJ_P0082842	109 (aa)	-	UPI0003D172CD
MGP_SPRETEiJ_T0082841	-	605	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0082840	-	618	-	MGP_SPRETEiJ_P0082840	168 (aa)	-	UPI000719A347

Gene Model

Click here to download MGP_SPRETEiJ_G0030812's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0030812's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0030812	Snrnp70	70	46.667	MGP_SPRETEiJ_G0028751	Snrnp35	64	48.718

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSG00000104852	SNRNP70	100	100.000	Homo_sapiens
MGP_SPRETEiJ_G0030812	Snrnp70	100	91.743	ENSAPOG00000009322	snrnp70	89	88.028	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSAMEG00000014468	SNRNP70	100	93.096	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0030812	Snrnp70	100	91.743	ENSAOCG00000011672	snrnp70	50	83.482	Amphiprion_ocellaris
MGP_SPRETEiJ_G0030812	Snrnp70	100	97.248	ENSACAG00000013276	SNRNP70	51	97.297	Anolis_carolinensis
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSANAG00000036787	SNRNP70	99	97.561	Aotus_nancymaae
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSBTAG00000048800	-	99	97.561	Bos_taurus
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSCJAG00000000193	SNRNP70	99	98.814	Callithrix_jacchus
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSCAFG00000003711	SNRNP70	99	97.561	Canis_familiaris
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSCAFG00020025470	SNRNP70	100	93.778	Canis_lupus_dingo
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSCHIG00000018534	-	99	97.561	Capra_hircus
MGP_SPRETEiJ_G0030812	Snrnp70	100	86.992	ENSTSYG00000032350	-	99	86.992	Carlito_syrichta
MGP_SPRETEiJ_G0030812	Snrnp70	94	100.000	ENSCAPG00000017198	-	94	100.000	Cavia_aperea
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSCPOG00000019589	SNRNP70	100	95.759	Cavia_porcellus
MGP_SPRETEiJ_G0030812	Snrnp70	98	96.460	ENSCCAG00000036551	SNRNP70	100	94.015	Cebus_capucinus
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSCATG00000016149	SNRNP70	100	94.889	Cercocebus_atys
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSCLAG00000007991	SNRNP70	100	95.536	Chinchilla_lanigera
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSCSAG00000002759	SNRNP70	100	92.889	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0030812	Snrnp70	100	99.083	ENSCPBG00000014841	SNRNP70	51	99.099	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0030812	Snrnp70	100	64.545	ENSCSAVG00000010109	-	50	70.681	Ciona_savignyi
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSCANG00000036607	SNRNP70	99	99.187	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSCGRG00001020676	Snrnp70	100	98.884	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSCGRG00000018048	Snrnp70	100	98.884	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0030812	Snrnp70	100	90.826	ENSCSEG00000011978	snrnp70	99	91.480	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0030812	Snrnp70	100	90.826	ENSCVAG00000003912	snrnp70	100	90.625	Cyprinodon_variegatus
MGP_SPRETEiJ_G0030812	Snrnp70	100	88.991	ENSDARG00000077126	snrnp70	99	88.820	Danio_rerio
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSDNOG00000035849	-	99	97.561	Dasypus_novemcinctus
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSDORG00000010228	Snrnp70	100	95.323	Dipodomys_ordii
MGP_SPRETEiJ_G0030812	Snrnp70	81	100.000	ENSETEG00000005009	SNRNP70	74	100.000	Echinops_telfairi
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSEASG00005004917	SNRNP70	100	95.759	Equus_asinus_asinus
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSECAG00000013936	-	99	97.561	Equus_caballus
MGP_SPRETEiJ_G0030812	Snrnp70	90	95.192	ENSEEUG00000005666	SNRNP70	53	77.391	Erinaceus_europaeus
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSFCAG00000042603	SNRNP70	55	100.000	Felis_catus
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSFDAG00000013830	SNRNP70	98	100.000	Fukomys_damarensis
MGP_SPRETEiJ_G0030812	Snrnp70	100	89.908	ENSGMOG00000011492	snrnp70	97	91.403	Gadus_morhua
MGP_SPRETEiJ_G0030812	Snrnp70	100	90.826	ENSGACG00000000448	snrnp70	70	91.928	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0030812	Snrnp70	95	80.102	ENSGAGG00000012628	SNRNP70	99	80.000	Gopherus_agassizii
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSGGOG00000008245	SNRNP70	99	97.561	Gorilla_gorilla
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSHGLG00100001651	-	99	97.561	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSSTOG00000013988	-	99	97.561	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSJJAG00000002614	Snrnp70	100	95.759	Jaculus_jaculus
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSLAFG00000028536	SNRNP70	100	100.000	Loxodonta_africana
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSMFAG00000039824	SNRNP70	100	94.889	Macaca_fascicularis
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSMMUG00000004928	SNRNP70	99	97.561	Macaca_mulatta
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSMNEG00000038057	SNRNP70	100	92.444	Macaca_nemestrina
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSMLEG00000030967	SNRNP70	100	94.889	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSMAUG00000020970	Snrnp70	100	98.661	Mesocricetus_auratus
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSMICG00000038437	SNRNP70	100	99.190	Microcebus_murinus
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSMOCG00000012825	Snrnp70	100	99.107	Microtus_ochrogaster
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	MGP_CAROLIEiJ_G0029714	Snrnp70	100	100.000	Mus_caroli
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSMUSG00000063511	Snrnp70	100	100.000	Mus_musculus
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	MGP_PahariEiJ_G0012939	Snrnp70	100	100.000	Mus_pahari
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSMPUG00000003258	SNRNP70	100	95.089	Mustela_putorius_furo
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSMLUG00000011766	SNRNP70	100	95.536	Myotis_lucifugus
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSNGAG00000021191	Snrnp70	100	98.837	Nannospalax_galili
MGP_SPRETEiJ_G0030812	Snrnp70	100	90.826	ENSNBRG00000003126	snrnp70	96	92.377	Neolamprologus_brichardi
MGP_SPRETEiJ_G0030812	Snrnp70	98	96.460	ENSNLEG00000004899	SNRNP70	98	99.177	Nomascus_leucogenys
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSODEG00000017499	SNRNP70	100	95.000	Octodon_degus
MGP_SPRETEiJ_G0030812	Snrnp70	100	90.826	ENSONIG00000007822	snrnp70	52	91.928	Oreochromis_niloticus
MGP_SPRETEiJ_G0030812	Snrnp70	100	99.083	ENSOANG00000005213	SNRNP70	97	99.550	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSOCUG00000015081	SNRNP70	50	100.000	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0030812	Snrnp70	100	99.091	ENSOGAG00000029310	SNRNP70	100	95.323	Otolemur_garnettii
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSOARG00000012608	SNRNP70	93	100.000	Ovis_aries
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSPPAG00000035067	SNRNP70	99	100.000	Pan_paniscus
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSPPRG00000005579	SNRNP70	100	95.089	Panthera_pardus
MGP_SPRETEiJ_G0030812	Snrnp70	100	89.189	ENSPTIG00000018250	-	99	89.189	Panthera_tigris_altaica
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSPTRG00000011277	SNRNP70	100	99.602	Pan_troglodytes
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSPANG00000004068	SNRNP70	100	94.889	Papio_anubis
MGP_SPRETEiJ_G0030812	Snrnp70	100	84.404	ENSPKIG00000019992	snrnp70	85	80.745	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0030812	Snrnp70	100	99.083	ENSPSIG00000015251	SNRNP70	90	85.217	Pelodiscus_sinensis
MGP_SPRETEiJ_G0030812	Snrnp70	100	90.826	ENSPMGG00000010153	snrnp70	78	90.798	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSPEMG00000019011	Snrnp70	100	99.107	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0030812	Snrnp70	100	79.817	ENSPMAG00000008502	snrnp70	97	83.422	Petromyzon_marinus
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSPCIG00000007296	SNRNP70	52	100.000	Phascolarctos_cinereus
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSPPYG00000010234	SNRNP70	100	94.444	Pongo_abelii
MGP_SPRETEiJ_G0030812	Snrnp70	92	100.000	ENSPCOG00000023103	SNRNP70	82	91.739	Propithecus_coquereli
MGP_SPRETEiJ_G0030812	Snrnp70	100	92.634	ENSPVAG00000009578	SNRNP70	100	92.634	Pteropus_vampyrus
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSRBIG00000042387	SNRNP70	100	94.667	Rhinopithecus_bieti
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSRROG00000033636	SNRNP70	100	94.889	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSSBOG00000020026	SNRNP70	99	97.561	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSSHAG00000002194	SNRNP70	52	100.000	Sarcophilus_harrisii
MGP_SPRETEiJ_G0030812	Snrnp70	100	99.083	ENSSPUG00000016621	SNRNP70	52	98.649	Sphenodon_punctatus
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSSSCG00000023792	-	99	97.561	Sus_scrofa
MGP_SPRETEiJ_G0030812	Snrnp70	100	89.908	ENSTNIG00000014186	-	99	90.000	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSTTRG00000017099	SNRNP70	100	95.100	Tursiops_truncatus
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSUAMG00000016147	SNRNP70	100	95.089	Ursus_americanus
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSUMAG00000001467	SNRNP70	99	97.561	Ursus_maritimus
MGP_SPRETEiJ_G0030812	Snrnp70	100	99.083	ENSVPAG00000005959	-	100	80.995	Vicugna_pacos
MGP_SPRETEiJ_G0030812	Snrnp70	100	100.000	ENSVVUG00000022976	SNRNP70	99	97.561	Vulpes_vulpes