EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0031539 (Gene tree)
Gene ID: -
Gene Symbol: Tnrc6a
Alias: 2010321I05Rik|3110054G10Rik|CAGH26|D130023A07Rik|Tnrc6
Full Name: trinucleotide repeat containing 6a
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 71221 bases
Position: chr7:112883278-112954498
Accession: 2385292
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0085395	Ago_hook	PF10427.9	2.6e-18	1	1
MGP_SPRETEiJ_P0085392	Ago_hook	PF10427.9	5.2e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0085398	-	606	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0085399	-	463	-	MGP_SPRETEiJ_P0085399	154 (aa)	-	-
MGP_SPRETEiJ_T0085392	-	8312	-	MGP_SPRETEiJ_P0085392	1944 (aa)	-	-
MGP_SPRETEiJ_T0085393	-	3571	-	MGP_SPRETEiJ_P0085393	35 (aa)	-	-
MGP_SPRETEiJ_T0085390	-	631	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0085391	-	307	-	MGP_SPRETEiJ_P0085391	53 (aa)	-	-
MGP_SPRETEiJ_T0085396	-	4309	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0085397	-	939	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0085394	-	1783	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0085395	-	5235	-	MGP_SPRETEiJ_P0085395	1398 (aa)	-	-
MGP_SPRETEiJ_T0085400	-	3306	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0031539's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0031539's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0031539	Tnrc6a	98	44.347	MGP_SPRETEiJ_G0018309	Tnrc6c	99	42.315
MGP_SPRETEiJ_G0031539	Tnrc6a	98	40.453	MGP_SPRETEiJ_G0020941	Tnrc6b	98	38.044

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0031539	Tnrc6a	100	94.996	ENSG00000090905	TNRC6A	100	95.000	Homo_sapiens
MGP_SPRETEiJ_G0031539	Tnrc6a	100	94.853	ENSAMEG00000009333	TNRC6A	99	93.410	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0031539	Tnrc6a	100	83.227	ENSAPLG00000009978	TNRC6A	100	80.767	Anas_platyrhynchos
MGP_SPRETEiJ_G0031539	Tnrc6a	99	58.939	ENSACAG00000011857	TNRC6A	100	56.409	Anolis_carolinensis
MGP_SPRETEiJ_G0031539	Tnrc6a	100	94.996	ENSANAG00000025252	TNRC6A	100	94.021	Aotus_nancymaae
MGP_SPRETEiJ_G0031539	Tnrc6a	99	57.438	ENSAMXG00000019919	tnrc6a	100	56.025	Astyanax_mexicanus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	93.710	ENSBTAG00000017999	TNRC6A	99	92.154	Bos_taurus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	94.925	ENSCJAG00000020677	TNRC6A	100	93.343	Callithrix_jacchus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	94.496	ENSCAFG00000017531	TNRC6A	100	93.156	Canis_familiaris
MGP_SPRETEiJ_G0031539	Tnrc6a	100	92.995	ENSCAFG00020021160	TNRC6A	99	91.820	Canis_lupus_dingo
MGP_SPRETEiJ_G0031539	Tnrc6a	100	90.064	ENSCHIG00000019448	TNRC6A	100	89.807	Capra_hircus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	94.782	ENSTSYG00000012711	TNRC6A	100	93.667	Carlito_syrichta
MGP_SPRETEiJ_G0031539	Tnrc6a	100	91.208	ENSCPOG00000036684	TNRC6A	100	91.624	Cavia_porcellus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	94.925	ENSCCAG00000033664	TNRC6A	100	93.874	Cebus_capucinus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	93.674	ENSCATG00000019284	TNRC6A	99	91.035	Cercocebus_atys
MGP_SPRETEiJ_G0031539	Tnrc6a	100	86.919	ENSCLAG00000010217	TNRC6A	100	86.823	Chinchilla_lanigera
MGP_SPRETEiJ_G0031539	Tnrc6a	100	95.068	ENSCSAG00000006561	TNRC6A	100	93.980	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	88.921	ENSCHOG00000009374	TNRC6A	95	89.449	Choloepus_hoffmanni
MGP_SPRETEiJ_G0031539	Tnrc6a	100	79.487	ENSCPBG00000001881	TNRC6A	99	78.539	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0031539	Tnrc6a	100	95.068	ENSCANG00000041549	TNRC6A	100	94.076	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	96.712	ENSCGRG00001015021	Tnrc6a	99	96.588	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0031539	Tnrc6a	100	91.851	ENSCGRG00000013351	Tnrc6a	99	92.674	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0031539	Tnrc6a	99	57.153	ENSDARG00000079688	tnrc6a	99	56.498	Danio_rerio
MGP_SPRETEiJ_G0031539	Tnrc6a	100	92.521	ENSDNOG00000013989	TNRC6A	99	92.008	Dasypus_novemcinctus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	82.059	ENSETEG00000014658	TNRC6A	99	83.456	Echinops_telfairi
MGP_SPRETEiJ_G0031539	Tnrc6a	100	93.857	ENSEASG00005017693	TNRC6A	100	93.391	Equus_asinus_asinus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	93.786	ENSECAG00000025056	TNRC6A	100	93.391	Equus_caballus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	87.857	ENSEEUG00000004530	TNRC6A	99	86.945	Erinaceus_europaeus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	93.424	ENSFCAG00000025236	TNRC6A	100	92.532	Felis_catus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	81.366	ENSFALG00000003757	TNRC6A	99	79.148	Ficedula_albicollis
MGP_SPRETEiJ_G0031539	Tnrc6a	100	79.389	ENSGALG00000006068	TNRC6A	99	78.632	Gallus_gallus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	78.809	ENSGAGG00000023209	TNRC6A	99	78.232	Gopherus_agassizii
MGP_SPRETEiJ_G0031539	Tnrc6a	100	94.996	ENSGGOG00000005137	TNRC6A	99	93.933	Gorilla_gorilla
MGP_SPRETEiJ_G0031539	Tnrc6a	100	88.992	ENSHGLG00000012474	-	100	89.014	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0031539	Tnrc6a	99	69.192	ENSHGLG00000007368	-	93	70.861	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0031539	Tnrc6a	99	89.021	ENSHGLG00100012496	-	100	89.124	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0031539	Tnrc6a	100	94.282	ENSSTOG00000023394	TNRC6A	99	92.974	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0031539	Tnrc6a	99	71.710	ENSLACG00000006277	TNRC6A	100	69.459	Latimeria_chalumnae
MGP_SPRETEiJ_G0031539	Tnrc6a	99	82.561	ENSLOCG00000005517	tnrc6a	93	82.561	Lepisosteus_oculatus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	90.143	ENSLAFG00000004209	TNRC6A	99	90.474	Loxodonta_africana
MGP_SPRETEiJ_G0031539	Tnrc6a	100	93.674	ENSMFAG00000003824	TNRC6A	99	92.356	Macaca_fascicularis
MGP_SPRETEiJ_G0031539	Tnrc6a	100	94.996	ENSMMUG00000020428	TNRC6A	100	93.769	Macaca_mulatta
MGP_SPRETEiJ_G0031539	Tnrc6a	100	95.282	ENSMNEG00000034854	TNRC6A	100	93.598	Macaca_nemestrina
MGP_SPRETEiJ_G0031539	Tnrc6a	100	93.603	ENSMLEG00000042737	TNRC6A	97	92.168	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	82.495	ENSMGAG00000006455	TNRC6A	99	78.655	Meleagris_gallopavo
MGP_SPRETEiJ_G0031539	Tnrc6a	100	93.737	ENSMAUG00000012750	Tnrc6a	100	93.840	Mesocricetus_auratus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	95.568	ENSMICG00000030685	TNRC6A	100	94.292	Microcebus_murinus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	94.245	ENSMOCG00000000152	Tnrc6a	100	94.347	Microtus_ochrogaster
MGP_SPRETEiJ_G0031539	Tnrc6a	100	83.602	ENSMODG00000016348	TNRC6A	99	80.600	Monodelphis_domestica
MGP_SPRETEiJ_G0031539	Tnrc6a	100	98.498	MGP_CAROLIEiJ_G0030425	Tnrc6a	100	98.498	Mus_caroli
MGP_SPRETEiJ_G0031539	Tnrc6a	100	98.999	ENSMUSG00000052707	Tnrc6a	99	98.999	Mus_musculus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	99.070	MGP_PahariEiJ_G0013635	Tnrc6a	100	99.070	Mus_pahari
MGP_SPRETEiJ_G0031539	Tnrc6a	100	83.024	ENSMPUG00000012324	TNRC6A	100	80.337	Mustela_putorius_furo
MGP_SPRETEiJ_G0031539	Tnrc6a	99	92.704	ENSMLUG00000002701	TNRC6A	100	90.823	Myotis_lucifugus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	92.357	ENSNGAG00000020702	Tnrc6a	100	92.308	Nannospalax_galili
MGP_SPRETEiJ_G0031539	Tnrc6a	100	92.199	ENSNLEG00000011851	TNRC6A	98	91.261	Nomascus_leucogenys
MGP_SPRETEiJ_G0031539	Tnrc6a	93	87.818	ENSMEUG00000015959	-	77	87.818	Notamacropus_eugenii
MGP_SPRETEiJ_G0031539	Tnrc6a	96	98.507	ENSOPRG00000005819	TNRC6A	96	98.507	Ochotona_princeps
MGP_SPRETEiJ_G0031539	Tnrc6a	100	86.643	ENSODEG00000012802	TNRC6A	99	85.833	Octodon_degus
MGP_SPRETEiJ_G0031539	Tnrc6a	99	82.892	ENSOANG00000007672	TNRC6A	100	81.576	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	93.571	ENSOCUG00000004325	TNRC6A	100	91.284	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	94.861	ENSOGAG00000006666	TNRC6A	100	94.166	Otolemur_garnettii
MGP_SPRETEiJ_G0031539	Tnrc6a	100	93.594	ENSOARG00000017950	TNRC6A	100	91.302	Ovis_aries
MGP_SPRETEiJ_G0031539	Tnrc6a	100	94.925	ENSPPAG00000028379	TNRC6A	100	93.690	Pan_paniscus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	93.567	ENSPPRG00000005861	TNRC6A	100	92.634	Panthera_pardus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	93.495	ENSPTIG00000006346	TNRC6A	99	91.535	Panthera_tigris_altaica
MGP_SPRETEiJ_G0031539	Tnrc6a	100	94.996	ENSPTRG00000007898	TNRC6A	99	93.229	Pan_troglodytes
MGP_SPRETEiJ_G0031539	Tnrc6a	100	91.923	ENSPANG00000018523	TNRC6A	100	91.501	Papio_anubis
MGP_SPRETEiJ_G0031539	Tnrc6a	99	77.376	ENSPKIG00000012859	tnrc6a	99	75.862	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0031539	Tnrc6a	100	74.452	ENSPSIG00000003965	TNRC6A	99	75.246	Pelodiscus_sinensis
MGP_SPRETEiJ_G0031539	Tnrc6a	100	93.737	ENSPEMG00000016318	Tnrc6a	100	94.090	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0031539	Tnrc6a	100	85.582	ENSPCIG00000012106	TNRC6A	100	82.297	Phascolarctos_cinereus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	94.996	ENSPPYG00000007202	TNRC6A	100	93.170	Pongo_abelii
MGP_SPRETEiJ_G0031539	Tnrc6a	95	96.907	ENSPCAG00000008260	TNRC6A	94	96.907	Procavia_capensis
MGP_SPRETEiJ_G0031539	Tnrc6a	100	92.495	ENSPCOG00000010134	TNRC6A	100	92.198	Propithecus_coquereli
MGP_SPRETEiJ_G0031539	Tnrc6a	85	75.084	ENSPVAG00000012066	TNRC6A	99	70.622	Pteropus_vampyrus
MGP_SPRETEiJ_G0031539	Tnrc6a	99	98.205	ENSRNOG00000024737	Tnrc6a	99	97.254	Rattus_norvegicus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	95.211	ENSRBIG00000014222	TNRC6A	99	93.927	Rhinopithecus_bieti
MGP_SPRETEiJ_G0031539	Tnrc6a	100	95.211	ENSRROG00000032360	TNRC6A	100	94.319	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0031539	Tnrc6a	100	94.996	ENSSBOG00000036197	TNRC6A	100	95.026	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0031539	Tnrc6a	100	80.659	ENSSHAG00000008811	TNRC6A	99	80.090	Sarcophilus_harrisii
MGP_SPRETEiJ_G0031539	Tnrc6a	95	67.466	ENSSFOG00015008920	tnrc6a	99	69.219	Scleropages_formosus
MGP_SPRETEiJ_G0031539	Tnrc6a	72	82.065	ENSSARG00000002479	TNRC6A	89	83.152	Sorex_araneus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	78.955	ENSSPUG00000010525	TNRC6A	100	77.691	Sphenodon_punctatus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	94.853	ENSSSCG00000038870	TNRC6A	100	94.968	Sus_scrofa
MGP_SPRETEiJ_G0031539	Tnrc6a	100	78.505	ENSTGUG00000006142	TNRC6A	100	77.289	Taeniopygia_guttata
MGP_SPRETEiJ_G0031539	Tnrc6a	100	91.851	ENSTBEG00000014965	TNRC6A	99	91.323	Tupaia_belangeri
MGP_SPRETEiJ_G0031539	Tnrc6a	94	95.901	ENSTTRG00000002008	TNRC6A	93	95.901	Tursiops_truncatus
MGP_SPRETEiJ_G0031539	Tnrc6a	79	89.760	ENSUAMG00000006656	-	93	90.214	Ursus_americanus
MGP_SPRETEiJ_G0031539	Tnrc6a	100	94.925	ENSUMAG00000008274	TNRC6A	100	92.882	Ursus_maritimus
MGP_SPRETEiJ_G0031539	Tnrc6a	65	83.499	ENSVPAG00000010764	-	57	86.082	Vicugna_pacos
MGP_SPRETEiJ_G0031539	Tnrc6a	100	94.425	ENSVVUG00000005380	TNRC6A	99	93.100	Vulpes_vulpes
MGP_SPRETEiJ_G0031539	Tnrc6a	99	67.726	ENSXETG00000030437	TNRC6A	99	65.480	Xenopus_tropicalis