EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0031917 (Gene tree)
Gene ID: -
Gene Symbol: Lig4
Alias: 5830471N16Rik|DNA ligase IV|tiny
Full Name: ligase IV%2C DNA%2C ATP-dependent
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 7547 bases
Position: chr8:6983682-6991228
Accession: 1335098
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0087137	RNA_ligase	PF09414.10	4.3e-10	1	1
MGP_SPRETEiJ_P0087138	RNA_ligase	PF09414.10	4.3e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0087138	-	3004	-	MGP_SPRETEiJ_P0087138	911 (aa)	-	-
MGP_SPRETEiJ_T0087137	-	4040	-	MGP_SPRETEiJ_P0087137	911 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0031917's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0031917's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0031917	Lig4	100	87.047	ENSG00000174405	LIG4	100	87.047	Homo_sapiens
MGP_SPRETEiJ_G0031917	Lig4	99	65.055	ENSAPOG00000000866	lig4	99	65.165	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0031917	Lig4	100	83.535	ENSAMEG00000019685	LIG4	99	83.535	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0031917	Lig4	99	65.677	ENSACIG00000018309	lig4	99	65.787	Amphilophus_citrinellus
MGP_SPRETEiJ_G0031917	Lig4	99	64.725	ENSAOCG00000011768	lig4	99	64.835	Amphiprion_ocellaris
MGP_SPRETEiJ_G0031917	Lig4	99	64.945	ENSAPEG00000017815	lig4	99	65.055	Amphiprion_percula
MGP_SPRETEiJ_G0031917	Lig4	99	65.198	ENSATEG00000005583	lig4	99	65.308	Anabas_testudineus
MGP_SPRETEiJ_G0031917	Lig4	97	73.750	ENSAPLG00000001673	LIG4	99	73.750	Anas_platyrhynchos
MGP_SPRETEiJ_G0031917	Lig4	99	74.419	ENSACAG00000014566	LIG4	99	74.419	Anolis_carolinensis
MGP_SPRETEiJ_G0031917	Lig4	100	86.937	ENSANAG00000012446	LIG4	100	86.937	Aotus_nancymaae
MGP_SPRETEiJ_G0031917	Lig4	99	64.693	ENSACLG00000027051	lig4	99	65.017	Astatotilapia_calliptera
MGP_SPRETEiJ_G0031917	Lig4	99	63.786	ENSAMXG00000008192	lig4	94	63.786	Astyanax_mexicanus
MGP_SPRETEiJ_G0031917	Lig4	100	84.962	ENSBTAG00000015868	LIG4	100	84.962	Bos_taurus
MGP_SPRETEiJ_G0031917	Lig4	100	86.059	ENSCJAG00000014689	LIG4	100	86.059	Callithrix_jacchus
MGP_SPRETEiJ_G0031917	Lig4	100	85.401	ENSCAFG00000006031	LIG4	100	85.401	Canis_familiaris
MGP_SPRETEiJ_G0031917	Lig4	100	85.401	ENSCAFG00020021230	LIG4	100	85.401	Canis_lupus_dingo
MGP_SPRETEiJ_G0031917	Lig4	100	84.413	ENSCHIG00000001019	LIG4	100	84.413	Capra_hircus
MGP_SPRETEiJ_G0031917	Lig4	99	85.936	ENSCAPG00000006284	LIG4	99	85.936	Cavia_aperea
MGP_SPRETEiJ_G0031917	Lig4	100	85.840	ENSCPOG00000014266	LIG4	100	85.840	Cavia_porcellus
MGP_SPRETEiJ_G0031917	Lig4	100	85.950	ENSCCAG00000019971	LIG4	100	85.950	Cebus_capucinus
MGP_SPRETEiJ_G0031917	Lig4	100	86.279	ENSCATG00000021075	LIG4	100	86.279	Cercocebus_atys
MGP_SPRETEiJ_G0031917	Lig4	100	86.718	ENSCLAG00000003376	LIG4	100	86.718	Chinchilla_lanigera
MGP_SPRETEiJ_G0031917	Lig4	100	86.498	ENSCSAG00000000211	LIG4	100	86.498	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0031917	Lig4	99	76.380	ENSCPBG00000023291	LIG4	100	75.926	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0031917	Lig4	69	45.683	ENSCING00000009536	-	97	45.683	Ciona_intestinalis
MGP_SPRETEiJ_G0031917	Lig4	83	45.729	ENSCSAVG00000010336	-	98	45.729	Ciona_savignyi
MGP_SPRETEiJ_G0031917	Lig4	100	86.608	ENSCANG00000005805	LIG4	100	86.608	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0031917	Lig4	100	92.215	ENSCGRG00001012072	Lig4	100	92.215	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0031917	Lig4	100	92.215	ENSCGRG00000013417	Lig4	100	92.215	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0031917	Lig4	97	65.227	ENSCSEG00000013905	lig4	95	65.227	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0031917	Lig4	99	65.116	ENSCVAG00000007896	lig4	99	65.116	Cyprinodon_variegatus
MGP_SPRETEiJ_G0031917	Lig4	99	63.858	ENSDARG00000060620	lig4	98	63.858	Danio_rerio
MGP_SPRETEiJ_G0031917	Lig4	100	84.649	ENSDNOG00000000513	LIG4	100	84.649	Dasypus_novemcinctus
MGP_SPRETEiJ_G0031917	Lig4	100	85.620	ENSDORG00000027303	Lig4	100	85.620	Dipodomys_ordii
MGP_SPRETEiJ_G0031917	Lig4	89	31.665	FBgn0030506	Lig4	91	31.665	Drosophila_melanogaster
MGP_SPRETEiJ_G0031917	Lig4	99	81.042	ENSETEG00000015563	LIG4	100	81.153	Echinops_telfairi
MGP_SPRETEiJ_G0031917	Lig4	99	43.326	ENSEBUG00000014243	lig4	99	43.232	Eptatretus_burgeri
MGP_SPRETEiJ_G0031917	Lig4	100	85.840	ENSEASG00005022073	LIG4	100	85.840	Equus_asinus_asinus
MGP_SPRETEiJ_G0031917	Lig4	100	85.510	ENSECAG00000003257	LIG4	100	85.510	Equus_caballus
MGP_SPRETEiJ_G0031917	Lig4	99	65.601	ENSELUG00000006787	lig4	99	65.932	Esox_lucius
MGP_SPRETEiJ_G0031917	Lig4	100	85.181	ENSFCAG00000031985	LIG4	100	85.181	Felis_catus
MGP_SPRETEiJ_G0031917	Lig4	89	74.293	ENSFALG00000004214	LIG4	98	74.293	Ficedula_albicollis
MGP_SPRETEiJ_G0031917	Lig4	100	85.401	ENSFDAG00000008973	LIG4	100	85.401	Fukomys_damarensis
MGP_SPRETEiJ_G0031917	Lig4	99	63.956	ENSFHEG00000007398	lig4	90	63.956	Fundulus_heteroclitus
MGP_SPRETEiJ_G0031917	Lig4	85	64.470	ENSGMOG00000012843	lig4	99	64.470	Gadus_morhua
MGP_SPRETEiJ_G0031917	Lig4	100	72.926	ENSGALG00000016854	LIG4	100	72.926	Gallus_gallus
MGP_SPRETEiJ_G0031917	Lig4	99	64.588	ENSGAFG00000019779	lig4	95	64.136	Gambusia_affinis
MGP_SPRETEiJ_G0031917	Lig4	99	63.344	ENSGACG00000014135	lig4	99	63.344	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0031917	Lig4	100	86.937	ENSGGOG00000027771	LIG4	100	86.937	Gorilla_gorilla
MGP_SPRETEiJ_G0031917	Lig4	99	64.583	ENSHBUG00000006245	lig4	99	64.796	Haplochromis_burtoni
MGP_SPRETEiJ_G0031917	Lig4	100	85.291	ENSHGLG00000000718	LIG4	100	85.291	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0031917	Lig4	100	85.291	ENSHGLG00100003265	LIG4	100	85.291	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0031917	Lig4	99	64.505	ENSHCOG00000012010	lig4	99	64.505	Hippocampus_comes
MGP_SPRETEiJ_G0031917	Lig4	99	65.165	ENSIPUG00000013748	lig4	99	65.165	Ictalurus_punctatus
MGP_SPRETEiJ_G0031917	Lig4	100	86.169	ENSSTOG00000024303	LIG4	100	86.169	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0031917	Lig4	100	86.389	ENSJJAG00000006750	Lig4	100	86.389	Jaculus_jaculus
MGP_SPRETEiJ_G0031917	Lig4	99	64.563	ENSKMAG00000001149	lig4	99	64.563	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0031917	Lig4	91	65.783	ENSLBEG00000014578	lig4	99	65.904	Labrus_bergylta
MGP_SPRETEiJ_G0031917	Lig4	99	71.128	ENSLACG00000003282	LIG4	99	71.128	Latimeria_chalumnae
MGP_SPRETEiJ_G0031917	Lig4	99	69.934	ENSLOCG00000008901	lig4	98	69.934	Lepisosteus_oculatus
MGP_SPRETEiJ_G0031917	Lig4	100	82.804	ENSLAFG00000031152	LIG4	100	82.804	Loxodonta_africana
MGP_SPRETEiJ_G0031917	Lig4	100	86.389	ENSMFAG00000037235	LIG4	100	86.389	Macaca_fascicularis
MGP_SPRETEiJ_G0031917	Lig4	100	86.389	ENSMMUG00000008874	LIG4	100	86.389	Macaca_mulatta
MGP_SPRETEiJ_G0031917	Lig4	100	86.389	ENSMNEG00000023575	LIG4	100	86.389	Macaca_nemestrina
MGP_SPRETEiJ_G0031917	Lig4	100	86.389	ENSMLEG00000026720	LIG4	100	86.389	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0031917	Lig4	99	65.275	ENSMAMG00000008472	lig4	99	65.385	Mastacembelus_armatus
MGP_SPRETEiJ_G0031917	Lig4	99	64.693	ENSMZEG00005001855	lig4	99	64.906	Maylandia_zebra
MGP_SPRETEiJ_G0031917	Lig4	100	72.926	ENSMGAG00000015532	LIG4	100	72.926	Meleagris_gallopavo
MGP_SPRETEiJ_G0031917	Lig4	100	89.352	ENSMOCG00000019000	Lig4	100	89.352	Microtus_ochrogaster
MGP_SPRETEiJ_G0031917	Lig4	99	64.341	ENSMMOG00000004390	lig4	99	64.452	Mola_mola
MGP_SPRETEiJ_G0031917	Lig4	100	80.571	ENSMODG00000025064	LIG4	100	81.031	Monodelphis_domestica
MGP_SPRETEiJ_G0031917	Lig4	99	64.563	ENSMALG00000008555	lig4	99	64.563	Monopterus_albus
MGP_SPRETEiJ_G0031917	Lig4	100	97.914	MGP_CAROLIEiJ_G0030809	Lig4	100	97.914	Mus_caroli
MGP_SPRETEiJ_G0031917	Lig4	100	98.573	ENSMUSG00000049717	Lig4	100	98.573	Mus_musculus
MGP_SPRETEiJ_G0031917	Lig4	100	97.366	MGP_PahariEiJ_G0021270	Lig4	100	97.366	Mus_pahari
MGP_SPRETEiJ_G0031917	Lig4	100	84.193	ENSMPUG00000018675	LIG4	100	84.193	Mustela_putorius_furo
MGP_SPRETEiJ_G0031917	Lig4	100	85.620	ENSMLUG00000001267	LIG4	100	85.620	Myotis_lucifugus
MGP_SPRETEiJ_G0031917	Lig4	100	88.474	ENSNGAG00000013258	Lig4	100	88.474	Nannospalax_galili
MGP_SPRETEiJ_G0031917	Lig4	99	64.912	ENSNBRG00000021252	lig4	99	65.237	Neolamprologus_brichardi
MGP_SPRETEiJ_G0031917	Lig4	100	86.389	ENSNLEG00000007888	LIG4	100	86.389	Nomascus_leucogenys
MGP_SPRETEiJ_G0031917	Lig4	100	85.071	ENSOPRG00000005765	LIG4	100	85.071	Ochotona_princeps
MGP_SPRETEiJ_G0031917	Lig4	100	85.071	ENSODEG00000019683	LIG4	100	85.071	Octodon_degus
MGP_SPRETEiJ_G0031917	Lig4	99	64.803	ENSONIG00000011969	lig4	98	65.017	Oreochromis_niloticus
MGP_SPRETEiJ_G0031917	Lig4	100	86.498	ENSOCUG00000015734	LIG4	100	86.498	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0031917	Lig4	99	63.816	ENSORLG00000004041	lig4	99	64.035	Oryzias_latipes
MGP_SPRETEiJ_G0031917	Lig4	99	64.364	ENSORLG00020019607	lig4	99	64.583	Oryzias_latipes_hni
MGP_SPRETEiJ_G0031917	Lig4	99	63.925	ENSORLG00015017754	lig4	99	64.035	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0031917	Lig4	74	68.787	ENSOMEG00000003459	lig4	98	68.787	Oryzias_melastigma
MGP_SPRETEiJ_G0031917	Lig4	100	85.855	ENSOGAG00000032120	LIG4	99	85.855	Otolemur_garnettii
MGP_SPRETEiJ_G0031917	Lig4	82	85.772	ENSOARG00000005590	LIG4	98	85.772	Ovis_aries
MGP_SPRETEiJ_G0031917	Lig4	100	86.828	ENSPPAG00000032998	LIG4	100	86.828	Pan_paniscus
MGP_SPRETEiJ_G0031917	Lig4	100	85.620	ENSPPRG00000017804	LIG4	100	85.620	Panthera_pardus
MGP_SPRETEiJ_G0031917	Lig4	100	85.620	ENSPTIG00000010051	LIG4	100	85.620	Panthera_tigris_altaica
MGP_SPRETEiJ_G0031917	Lig4	100	86.937	ENSPTRG00000006025	LIG4	100	86.937	Pan_troglodytes
MGP_SPRETEiJ_G0031917	Lig4	100	86.389	ENSPANG00000007562	LIG4	100	86.389	Papio_anubis
MGP_SPRETEiJ_G0031917	Lig4	99	65.423	ENSPKIG00000011645	lig4	98	65.423	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0031917	Lig4	99	76.180	ENSPSIG00000001504	LIG4	99	76.180	Pelodiscus_sinensis
MGP_SPRETEiJ_G0031917	Lig4	99	62.111	ENSPMGG00000013486	lig4	99	61.910	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0031917	Lig4	100	91.338	ENSPEMG00000000076	Lig4	100	91.338	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0031917	Lig4	100	81.469	ENSPCIG00000021882	LIG4	100	81.469	Phascolarctos_cinereus
MGP_SPRETEiJ_G0031917	Lig4	99	64.516	ENSPFOG00000000797	lig4	99	64.066	Poecilia_formosa
MGP_SPRETEiJ_G0031917	Lig4	99	64.405	ENSPLAG00000001196	lig4	99	63.956	Poecilia_latipinna
MGP_SPRETEiJ_G0031917	Lig4	99	64.516	ENSPMEG00000021353	lig4	99	64.286	Poecilia_mexicana
MGP_SPRETEiJ_G0031917	Lig4	99	64.071	ENSPREG00000007323	lig4	99	63.846	Poecilia_reticulata
MGP_SPRETEiJ_G0031917	Lig4	100	86.718	ENSPPYG00000005540	LIG4	100	86.718	Pongo_abelii
MGP_SPRETEiJ_G0031917	Lig4	100	85.950	ENSPVAG00000016403	LIG4	100	85.950	Pteropus_vampyrus
MGP_SPRETEiJ_G0031917	Lig4	99	64.583	ENSPNYG00000009660	lig4	99	64.906	Pundamilia_nyererei
MGP_SPRETEiJ_G0031917	Lig4	100	64.254	ENSPNAG00000028056	lig4	100	64.364	Pygocentrus_nattereri
MGP_SPRETEiJ_G0031917	Lig4	100	64.254	ENSPNAG00000028069	LIG4	100	64.364	Pygocentrus_nattereri
MGP_SPRETEiJ_G0031917	Lig4	100	93.963	ENSRNOG00000014605	Lig4	100	93.963	Rattus_norvegicus
MGP_SPRETEiJ_G0031917	Lig4	100	85.401	ENSRBIG00000039962	LIG4	100	85.401	Rhinopithecus_bieti
MGP_SPRETEiJ_G0031917	Lig4	100	86.279	ENSRROG00000006040	LIG4	100	86.279	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0031917	Lig4	100	86.279	ENSSBOG00000019029	LIG4	100	86.279	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0031917	Lig4	100	78.728	ENSSHAG00000009525	LIG4	100	78.728	Sarcophilus_harrisii
MGP_SPRETEiJ_G0031917	Lig4	100	64.738	ENSSFOG00015012835	lig4	100	64.738	Scleropages_formosus
MGP_SPRETEiJ_G0031917	Lig4	99	62.569	ENSSMAG00000011267	lig4	99	62.569	Scophthalmus_maximus
MGP_SPRETEiJ_G0031917	Lig4	99	65.521	ENSSDUG00000010343	lig4	98	65.521	Seriola_dumerili
MGP_SPRETEiJ_G0031917	Lig4	99	63.898	ENSSLDG00000003239	lig4	99	63.898	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0031917	Lig4	100	80.416	ENSSARG00000006573	LIG4	100	80.416	Sorex_araneus
MGP_SPRETEiJ_G0031917	Lig4	93	76.066	ENSSPUG00000002444	LIG4	100	76.066	Sphenodon_punctatus
MGP_SPRETEiJ_G0031917	Lig4	99	65.055	ENSSPAG00000001609	lig4	99	65.165	Stegastes_partitus
MGP_SPRETEiJ_G0031917	Lig4	99	83.608	ENSSSCG00000009540	LIG4	99	83.608	Sus_scrofa
MGP_SPRETEiJ_G0031917	Lig4	99	73.187	ENSTGUG00000010795	LIG4	100	73.187	Taeniopygia_guttata
MGP_SPRETEiJ_G0031917	Lig4	99	65.116	ENSTRUG00000009984	lig4	99	65.116	Takifugu_rubripes
MGP_SPRETEiJ_G0031917	Lig4	99	64.835	ENSTNIG00000010348	lig4	99	65.055	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0031917	Lig4	100	87.047	ENSTBEG00000017741	LIG4	100	87.047	Tupaia_belangeri
MGP_SPRETEiJ_G0031917	Lig4	100	85.840	ENSTTRG00000012660	LIG4	100	85.840	Tursiops_truncatus
MGP_SPRETEiJ_G0031917	Lig4	100	83.754	ENSUAMG00000003773	LIG4	100	83.754	Ursus_americanus
MGP_SPRETEiJ_G0031917	Lig4	99	70.000	ENSXETG00000002654	lig4	99	70.000	Xenopus_tropicalis
MGP_SPRETEiJ_G0031917	Lig4	99	64.294	ENSXCOG00000017401	lig4	99	63.846	Xiphophorus_couchianus
MGP_SPRETEiJ_G0031917	Lig4	99	64.667	ENSXMAG00000015142	lig4	99	64.215	Xiphophorus_maculatus