EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0031958 (Gene tree)
Gene ID: -
Gene Symbol: Upf3a
Alias: 2600001C03Rik|4930546M19Rik|RENT3A|UPF3
Full Name: UPF3 regulator of nonsense transcripts homolog A (yeast)
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 13153 bases
Position: chr8:10988750-11001902
Accession: 1914281
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0087286	Smg4_UPF3	PF03467.15	3e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0087286	-	1402	-	MGP_SPRETEiJ_P0087286	422 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0031958's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0031958's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0031958	Upf3a	99	69.816	ENSG00000169062	UPF3A	99	73.077	Homo_sapiens
MGP_SPRETEiJ_G0031958	Upf3a	57	63.200	ENSAPOG00000012775	upf3b	78	51.247	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0031958	Upf3a	92	69.554	ENSAMEG00000004259	UPF3A	88	69.554	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0031958	Upf3a	57	61.200	ENSAOCG00000000706	upf3b	78	48.468	Amphiprion_ocellaris
MGP_SPRETEiJ_G0031958	Upf3a	57	63.200	ENSAPEG00000005545	upf3b	78	50.556	Amphiprion_percula
MGP_SPRETEiJ_G0031958	Upf3a	92	58.312	ENSATEG00000005843	upf3a	81	59.474	Anabas_testudineus
MGP_SPRETEiJ_G0031958	Upf3a	84	65.847	ENSACAG00000001540	UPF3A	88	65.847	Anolis_carolinensis
MGP_SPRETEiJ_G0031958	Upf3a	69	50.000	ENSANAG00000025598	-	74	42.162	Aotus_nancymaae
MGP_SPRETEiJ_G0031958	Upf3a	99	65.899	ENSANAG00000021713	UPF3A	87	66.024	Aotus_nancymaae
MGP_SPRETEiJ_G0031958	Upf3a	88	59.151	ENSAMXG00000002608	upf3a	82	59.151	Astyanax_mexicanus
MGP_SPRETEiJ_G0031958	Upf3a	95	65.700	ENSCJAG00000019102	UPF3A	87	66.265	Callithrix_jacchus
MGP_SPRETEiJ_G0031958	Upf3a	99	70.252	ENSCAFG00000006504	UPF3A	89	70.192	Canis_familiaris
MGP_SPRETEiJ_G0031958	Upf3a	99	70.575	ENSCAFG00020014268	UPF3A	87	70.673	Canis_lupus_dingo
MGP_SPRETEiJ_G0031958	Upf3a	99	67.051	ENSCHIG00000008682	UPF3A	86	67.512	Capra_hircus
MGP_SPRETEiJ_G0031958	Upf3a	74	64.417	ENSTSYG00000001918	UPF3A	87	64.724	Carlito_syrichta
MGP_SPRETEiJ_G0031958	Upf3a	89	69.072	ENSCPOG00000006824	UPF3A	90	69.072	Cavia_porcellus
MGP_SPRETEiJ_G0031958	Upf3a	99	67.972	ENSCCAG00000018406	UPF3A	87	68.116	Cebus_capucinus
MGP_SPRETEiJ_G0031958	Upf3a	99	70.353	ENSCATG00000029733	UPF3A	87	69.951	Cercocebus_atys
MGP_SPRETEiJ_G0031958	Upf3a	99	69.159	ENSCSAG00000017388	UPF3A	87	68.704	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0031958	Upf3a	99	83.175	ENSCGRG00001017387	Upf3a	99	83.175	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0031958	Upf3a	53	57.709	ENSCGRG00000007627	Upf3b	70	53.795	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0031958	Upf3a	99	82.701	ENSCGRG00000001468	Upf3a	95	82.921	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0031958	Upf3a	54	62.185	ENSCSEG00000002046	upf3b	72	49.713	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0031958	Upf3a	92	54.054	ENSCSEG00000005106	upf3a	83	58.750	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0031958	Upf3a	87	58.933	ENSCVAG00000022333	upf3a	80	58.933	Cyprinodon_variegatus
MGP_SPRETEiJ_G0031958	Upf3a	87	55.208	ENSDARG00000069297	upf3a	81	57.105	Danio_rerio
MGP_SPRETEiJ_G0031958	Upf3a	89	69.720	ENSDNOG00000034391	UPF3A	89	69.975	Dasypus_novemcinctus
MGP_SPRETEiJ_G0031958	Upf3a	96	59.242	ENSETEG00000010110	UPF3A	87	59.091	Echinops_telfairi
MGP_SPRETEiJ_G0031958	Upf3a	99	68.433	ENSEASG00005021884	UPF3A	85	67.952	Equus_asinus_asinus
MGP_SPRETEiJ_G0031958	Upf3a	95	67.711	ENSECAG00000017141	UPF3A	85	67.711	Equus_caballus
MGP_SPRETEiJ_G0031958	Upf3a	84	59.887	ENSELUG00000011050	upf3a	74	59.887	Esox_lucius
MGP_SPRETEiJ_G0031958	Upf3a	52	63.636	ENSELUG00000020389	upf3b	51	61.024	Esox_lucius
MGP_SPRETEiJ_G0031958	Upf3a	95	68.029	ENSFCAG00000014602	UPF3A	87	68.029	Felis_catus
MGP_SPRETEiJ_G0031958	Upf3a	52	58.036	ENSFALG00000001569	UPF3B	85	47.086	Ficedula_albicollis
MGP_SPRETEiJ_G0031958	Upf3a	76	61.493	ENSGMOG00000019615	upf3a	100	60.597	Gadus_morhua
MGP_SPRETEiJ_G0031958	Upf3a	57	59.839	ENSGMOG00000001621	upf3b	52	59.839	Gadus_morhua
MGP_SPRETEiJ_G0031958	Upf3a	58	57.678	ENSGACG00000017435	upf3b	77	65.116	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0031958	Upf3a	76	62.617	ENSGACG00000001972	upf3a	100	62.617	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0031958	Upf3a	99	69.124	ENSGGOG00000015428	UPF3A	87	69.157	Gorilla_gorilla
MGP_SPRETEiJ_G0031958	Upf3a	98	54.654	ENSGGOG00000043074	-	83	55.808	Gorilla_gorilla
MGP_SPRETEiJ_G0031958	Upf3a	90	57.436	ENSGGOG00000041219	-	81	60.054	Gorilla_gorilla
MGP_SPRETEiJ_G0031958	Upf3a	90	71.129	ENSHGLG00000001544	UPF3A	90	71.129	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0031958	Upf3a	90	71.129	ENSHGLG00100013244	UPF3A	90	71.129	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0031958	Upf3a	57	60.569	ENSHCOG00000017004	upf3b	53	60.569	Hippocampus_comes
MGP_SPRETEiJ_G0031958	Upf3a	88	58.995	ENSIPUG00000023450	upf3a	82	58.995	Ictalurus_punctatus
MGP_SPRETEiJ_G0031958	Upf3a	55	64.490	ENSIPUG00000019249	upf3b	91	48.387	Ictalurus_punctatus
MGP_SPRETEiJ_G0031958	Upf3a	54	75.652	ENSSTOG00000030282	-	87	77.778	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0031958	Upf3a	50	84.211	ENSJJAG00000018099	-	98	84.211	Jaculus_jaculus
MGP_SPRETEiJ_G0031958	Upf3a	92	58.291	ENSKMAG00000004381	upf3a	82	58.291	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0031958	Upf3a	57	59.200	ENSLBEG00000028689	upf3b	54	59.200	Labrus_bergylta
MGP_SPRETEiJ_G0031958	Upf3a	87	53.369	ENSLBEG00000021570	upf3a	80	53.333	Labrus_bergylta
MGP_SPRETEiJ_G0031958	Upf3a	59	41.727	ENSLACG00000006645	UPF3A	83	37.380	Latimeria_chalumnae
MGP_SPRETEiJ_G0031958	Upf3a	92	57.895	ENSLOCG00000002665	upf3a	81	60.212	Lepisosteus_oculatus
MGP_SPRETEiJ_G0031958	Upf3a	56	64.919	ENSLOCG00000015238	upf3b	57	64.844	Lepisosteus_oculatus
MGP_SPRETEiJ_G0031958	Upf3a	76	62.784	ENSLAFG00000023358	UPF3A	83	61.960	Loxodonta_africana
MGP_SPRETEiJ_G0031958	Upf3a	67	50.993	ENSLAFG00000001267	UPF3B	80	49.347	Loxodonta_africana
MGP_SPRETEiJ_G0031958	Upf3a	99	66.353	ENSMFAG00000045016	UPF3A	87	66.010	Macaca_fascicularis
MGP_SPRETEiJ_G0031958	Upf3a	99	66.745	ENSMMUG00000007449	UPF3A	86	66.173	Macaca_mulatta
MGP_SPRETEiJ_G0031958	Upf3a	99	64.679	ENSMNEG00000036402	UPF3A	80	69.372	Macaca_nemestrina
MGP_SPRETEiJ_G0031958	Upf3a	88	68.883	ENSMLEG00000014726	UPF3A	89	67.792	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0031958	Upf3a	92	58.734	ENSMAMG00000018364	upf3a	80	58.734	Mastacembelus_armatus
MGP_SPRETEiJ_G0031958	Upf3a	80	65.616	ENSMGAG00000014837	UPF3A	87	65.616	Meleagris_gallopavo
MGP_SPRETEiJ_G0031958	Upf3a	84	81.461	ENSMOCG00000000550	Upf3a	98	81.461	Microtus_ochrogaster
MGP_SPRETEiJ_G0031958	Upf3a	85	68.194	ENSMODG00000003159	UPF3A	86	68.293	Monodelphis_domestica
MGP_SPRETEiJ_G0031958	Upf3a	100	95.024	MGP_CAROLIEiJ_G0030848	Upf3a	100	95.024	Mus_caroli
MGP_SPRETEiJ_G0031958	Upf3a	100	99.052	ENSMUSG00000038398	Upf3a	100	99.052	Mus_musculus
MGP_SPRETEiJ_G0031958	Upf3a	100	93.839	MGP_PahariEiJ_G0021311	Upf3a	100	93.839	Mus_pahari
MGP_SPRETEiJ_G0031958	Upf3a	99	69.213	ENSMPUG00000009139	UPF3A	86	68.765	Mustela_putorius_furo
MGP_SPRETEiJ_G0031958	Upf3a	84	69.003	ENSMLUG00000015905	UPF3A	88	69.003	Myotis_lucifugus
MGP_SPRETEiJ_G0031958	Upf3a	99	79.621	ENSNGAG00000019314	Upf3a	99	79.621	Nannospalax_galili
MGP_SPRETEiJ_G0031958	Upf3a	99	68.966	ENSNLEG00000007563	UPF3A	87	68.510	Nomascus_leucogenys
MGP_SPRETEiJ_G0031958	Upf3a	70	66.239	ENSOPRG00000008846	-	58	66.390	Ochotona_princeps
MGP_SPRETEiJ_G0031958	Upf3a	51	77.523	ENSODEG00000009176	-	86	77.523	Octodon_degus
MGP_SPRETEiJ_G0031958	Upf3a	76	60.241	ENSOANG00000006985	-	86	60.241	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0031958	Upf3a	81	63.842	ENSOCUG00000008450	UPF3A	77	61.702	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0031958	Upf3a	87	59.249	ENSORLG00000010911	upf3a	79	59.249	Oryzias_latipes
MGP_SPRETEiJ_G0031958	Upf3a	66	55.208	ENSORLG00000001026	upf3b	61	55.363	Oryzias_latipes
MGP_SPRETEiJ_G0031958	Upf3a	66	55.556	ENSORLG00020003758	upf3b	61	55.709	Oryzias_latipes_hni
MGP_SPRETEiJ_G0031958	Upf3a	86	57.796	ENSORLG00020014317	upf3a	79	57.796	Oryzias_latipes_hni
MGP_SPRETEiJ_G0031958	Upf3a	66	55.556	ENSORLG00015012954	upf3b	84	47.328	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0031958	Upf3a	65	47.703	ENSOMEG00000014736	upf3b	61	57.093	Oryzias_melastigma
MGP_SPRETEiJ_G0031958	Upf3a	87	56.800	ENSOMEG00000014425	upf3a	80	58.065	Oryzias_melastigma
MGP_SPRETEiJ_G0031958	Upf3a	91	69.444	ENSOGAG00000004788	UPF3A	96	69.444	Otolemur_garnettii
MGP_SPRETEiJ_G0031958	Upf3a	97	64.554	ENSOARG00000009004	UPF3A	83	67.929	Ovis_aries
MGP_SPRETEiJ_G0031958	Upf3a	66	48.239	ENSOARG00000007869	-	69	45.070	Ovis_aries
MGP_SPRETEiJ_G0031958	Upf3a	99	69.284	ENSPPAG00000042267	UPF3A	87	69.157	Pan_paniscus
MGP_SPRETEiJ_G0031958	Upf3a	95	67.788	ENSPPRG00000025062	UPF3A	87	67.788	Panthera_pardus
MGP_SPRETEiJ_G0031958	Upf3a	90	54.499	ENSPTRG00000051640	-	87	54.082	Pan_troglodytes
MGP_SPRETEiJ_G0031958	Upf3a	84	57.967	ENSPTRG00000041187	-	81	57.692	Pan_troglodytes
MGP_SPRETEiJ_G0031958	Upf3a	84	56.901	ENSPTRG00000041835	-	81	56.901	Pan_troglodytes
MGP_SPRETEiJ_G0031958	Upf3a	99	69.816	ENSPTRG00000006073	UPF3A	87	69.157	Pan_troglodytes
MGP_SPRETEiJ_G0031958	Upf3a	99	70.353	ENSPANG00000004346	UPF3A	87	69.951	Papio_anubis
MGP_SPRETEiJ_G0031958	Upf3a	56	63.052	ENSPKIG00000019226	upf3b	75	68.376	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0031958	Upf3a	84	65.668	ENSPSIG00000007468	UPF3A	89	65.668	Pelodiscus_sinensis
MGP_SPRETEiJ_G0031958	Upf3a	99	85.308	ENSPEMG00000019968	-	99	85.308	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0031958	Upf3a	78	71.429	ENSPCIG00000019590	-	80	76.630	Phascolarctos_cinereus
MGP_SPRETEiJ_G0031958	Upf3a	87	52.785	ENSPFOG00000013222	upf3a	79	61.126	Poecilia_formosa
MGP_SPRETEiJ_G0031958	Upf3a	99	69.124	ENSPPYG00000005536	UPF3A	87	69.157	Pongo_abelii
MGP_SPRETEiJ_G0031958	Upf3a	73	65.931	ENSPCAG00000013124	UPF3A	62	67.003	Procavia_capensis
MGP_SPRETEiJ_G0031958	Upf3a	99	65.207	ENSPVAG00000005656	UPF3A	87	65.942	Pteropus_vampyrus
MGP_SPRETEiJ_G0031958	Upf3a	88	58.713	ENSPNAG00000019532	upf3a	82	58.713	Pygocentrus_nattereri
MGP_SPRETEiJ_G0031958	Upf3a	52	67.123	ENSPNAG00000021528	upf3b	72	67.123	Pygocentrus_nattereri
MGP_SPRETEiJ_G0031958	Upf3a	94	90.127	ENSRNOG00000017397	Upf3a	97	90.127	Rattus_norvegicus
MGP_SPRETEiJ_G0031958	Upf3a	86	71.196	ENSRBIG00000034007	UPF3A	86	70.157	Rhinopithecus_bieti
MGP_SPRETEiJ_G0031958	Upf3a	84	71.910	ENSRROG00000012212	UPF3A	76	71.910	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0031958	Upf3a	99	60.138	ENSSBOG00000029989	UPF3A	86	60.000	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0031958	Upf3a	86	66.578	ENSSHAG00000009895	UPF3A	90	66.578	Sarcophilus_harrisii
MGP_SPRETEiJ_G0031958	Upf3a	84	45.833	ENSSHAG00000008634	UPF3B	79	49.485	Sarcophilus_harrisii
MGP_SPRETEiJ_G0031958	Upf3a	92	55.190	ENSSFOG00015021851	upf3a	83	55.190	Scleropages_formosus
MGP_SPRETEiJ_G0031958	Upf3a	62	62.271	ENSSFOG00015005614	upf3b	64	58.746	Scleropages_formosus
MGP_SPRETEiJ_G0031958	Upf3a	85	58.127	ENSSMAG00000003858	upf3a	79	72.650	Scophthalmus_maximus
MGP_SPRETEiJ_G0031958	Upf3a	57	62.550	ENSSMAG00000012913	upf3b	69	66.977	Scophthalmus_maximus
MGP_SPRETEiJ_G0031958	Upf3a	92	49.239	ENSSDUG00000009680	upf3a	80	58.081	Seriola_dumerili
MGP_SPRETEiJ_G0031958	Upf3a	84	58.904	ENSSARG00000007262	UPF3A	89	55.342	Sorex_araneus
MGP_SPRETEiJ_G0031958	Upf3a	55	62.705	ENSSPAG00000009989	upf3b	78	50.416	Stegastes_partitus
MGP_SPRETEiJ_G0031958	Upf3a	99	65.747	ENSSSCG00000024679	UPF3A	83	66.106	Sus_scrofa
MGP_SPRETEiJ_G0031958	Upf3a	87	66.755	ENSTGUG00000009493	UPF3A	96	66.667	Taeniopygia_guttata
MGP_SPRETEiJ_G0031958	Upf3a	89	57.592	ENSTRUG00000012730	upf3a	82	57.592	Takifugu_rubripes
MGP_SPRETEiJ_G0031958	Upf3a	87	50.674	ENSTNIG00000014973	upf3a	95	49.215	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0031958	Upf3a	68	62.000	ENSTBEG00000017186	-	95	62.000	Tupaia_belangeri
MGP_SPRETEiJ_G0031958	Upf3a	99	58.161	ENSTTRG00000015414	UPF3A	87	58.413	Tursiops_truncatus
MGP_SPRETEiJ_G0031958	Upf3a	84	69.672	ENSVPAG00000003525	UPF3A	89	69.672	Vicugna_pacos
MGP_SPRETEiJ_G0031958	Upf3a	99	67.816	ENSVVUG00000013538	UPF3A	84	68.585	Vulpes_vulpes
MGP_SPRETEiJ_G0031958	Upf3a	85	46.214	ENSXETG00000007440	upf3b	71	69.512	Xenopus_tropicalis
MGP_SPRETEiJ_G0031958	Upf3a	86	56.522	ENSXETG00000002572	upf3a	87	56.522	Xenopus_tropicalis