EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0032483 (Gene tree)
Gene ID: -
Gene Symbol: Chd9
Alias: 1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013
Full Name: chromodomain helicase DNA binding protein 9
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 233761 bases
Position: chr8:89885326-90119086
Accession: 1924001
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0088990	ResIII	PF04851.15	3.2e-06	1	1
MGP_SPRETEiJ_P0088991	ResIII	PF04851.15	3.2e-06	1	1
MGP_SPRETEiJ_P0088991	BRK	PF07533.16	3.2e-30	1	2
MGP_SPRETEiJ_P0088991	BRK	PF07533.16	3.2e-30	2	2
MGP_SPRETEiJ_P0088990	BRK	PF07533.16	3.2e-30	1	2
MGP_SPRETEiJ_P0088990	BRK	PF07533.16	3.2e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0088993	-	11509	-	MGP_SPRETEiJ_P0088993	2883 (aa)	-	-
MGP_SPRETEiJ_T0088991	-	11513	-	MGP_SPRETEiJ_P0088991	2867 (aa)	-	-
MGP_SPRETEiJ_T0088990	-	11561	-	MGP_SPRETEiJ_P0088990	2883 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0032483's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0032483's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0032483	Chd9	74	61.347	MGP_SPRETEiJ_G0025526	Chd6	87	68.786
MGP_SPRETEiJ_G0032483	Chd9	83	71.016	MGP_SPRETEiJ_G0026745	Chd7	94	54.334

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0032483	Chd9	99	90.101	ENSG00000177200	CHD9	100	100.000	Homo_sapiens
MGP_SPRETEiJ_G0032483	Chd9	84	69.851	ENSAPOG00000023034	chd9	67	74.094	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0032483	Chd9	99	90.146	ENSAMEG00000016232	CHD9	99	90.423	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0032483	Chd9	79	68.643	ENSACIG00000004097	chd9	73	61.419	Amphilophus_citrinellus
MGP_SPRETEiJ_G0032483	Chd9	84	70.072	ENSAOCG00000005487	chd9	67	74.226	Amphiprion_ocellaris
MGP_SPRETEiJ_G0032483	Chd9	84	70.021	ENSAPEG00000009859	chd9	99	60.300	Amphiprion_percula
MGP_SPRETEiJ_G0032483	Chd9	61	76.135	ENSATEG00000002748	chd9	73	63.736	Anabas_testudineus
MGP_SPRETEiJ_G0032483	Chd9	99	80.979	ENSAPLG00000002826	CHD9	74	82.833	Anas_platyrhynchos
MGP_SPRETEiJ_G0032483	Chd9	99	78.134	ENSACAG00000016150	CHD9	98	78.621	Anolis_carolinensis
MGP_SPRETEiJ_G0032483	Chd9	99	90.486	ENSANAG00000015630	CHD9	98	93.773	Aotus_nancymaae
MGP_SPRETEiJ_G0032483	Chd9	90	62.606	ENSAMXG00000005652	chd9	69	73.282	Astyanax_mexicanus
MGP_SPRETEiJ_G0032483	Chd9	99	89.656	ENSBTAG00000002287	CHD9	99	89.795	Bos_taurus
MGP_SPRETEiJ_G0032483	Chd9	99	90.262	ENSCJAG00000001573	CHD9	98	94.139	Callithrix_jacchus
MGP_SPRETEiJ_G0032483	Chd9	99	90.385	ENSCAFG00000009699	CHD9	99	90.524	Canis_familiaris
MGP_SPRETEiJ_G0032483	Chd9	99	90.385	ENSCAFG00020002879	CHD9	98	94.505	Canis_lupus_dingo
MGP_SPRETEiJ_G0032483	Chd9	99	90.069	ENSTSYG00000007693	CHD9	98	94.505	Carlito_syrichta
MGP_SPRETEiJ_G0032483	Chd9	81	73.764	ENSCAPG00000011604	CHD9	81	74.518	Cavia_aperea
MGP_SPRETEiJ_G0032483	Chd9	99	87.008	ENSCPOG00000036544	CHD9	99	87.461	Cavia_porcellus
MGP_SPRETEiJ_G0032483	Chd9	99	90.154	ENSCCAG00000036178	CHD9	98	93.407	Cebus_capucinus
MGP_SPRETEiJ_G0032483	Chd9	99	90.091	ENSCATG00000036753	CHD9	98	94.139	Cercocebus_atys
MGP_SPRETEiJ_G0032483	Chd9	99	90.038	ENSCLAG00000007137	CHD9	99	94.798	Chinchilla_lanigera
MGP_SPRETEiJ_G0032483	Chd9	99	90.045	ENSCSAG00000005311	CHD9	99	90.531	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0032483	Chd9	74	96.154	ENSCHOG00000003935	CHD9	76	96.154	Choloepus_hoffmanni
MGP_SPRETEiJ_G0032483	Chd9	92	90.318	ENSCPBG00000012459	CHD9	99	90.318	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0032483	Chd9	99	90.146	ENSCANG00000030349	CHD9	98	94.139	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0032483	Chd9	99	93.547	ENSCGRG00001016150	Chd9	99	93.094	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0032483	Chd9	99	93.547	ENSCGRG00000012850	Chd9	99	96.994	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0032483	Chd9	79	67.456	ENSCSEG00000009209	chd9	66	72.226	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0032483	Chd9	85	69.724	ENSCVAG00000016195	chd9	93	67.285	Cyprinodon_variegatus
MGP_SPRETEiJ_G0032483	Chd9	81	68.500	ENSDARG00000074498	chd9	99	67.384	Danio_rerio
MGP_SPRETEiJ_G0032483	Chd9	80	91.030	ENSDNOG00000006045	CHD9	99	91.245	Dasypus_novemcinctus
MGP_SPRETEiJ_G0032483	Chd9	69	90.471	ENSDORG00000008523	-	99	91.709	Dipodomys_ordii
MGP_SPRETEiJ_G0032483	Chd9	93	95.789	ENSETEG00000009565	CHD9	93	95.789	Echinops_telfairi
MGP_SPRETEiJ_G0032483	Chd9	99	90.288	ENSEASG00005014832	CHD9	99	93.483	Equus_asinus_asinus
MGP_SPRETEiJ_G0032483	Chd9	99	90.257	ENSECAG00000011505	CHD9	99	90.527	Equus_caballus
MGP_SPRETEiJ_G0032483	Chd9	83	96.133	ENSEEUG00000014515	CHD9	87	96.133	Erinaceus_europaeus
MGP_SPRETEiJ_G0032483	Chd9	76	73.958	ENSELUG00000006031	chd9	97	66.934	Esox_lucius
MGP_SPRETEiJ_G0032483	Chd9	99	90.000	ENSFCAG00000022534	CHD9	98	94.139	Felis_catus
MGP_SPRETEiJ_G0032483	Chd9	83	84.952	ENSFALG00000013276	CHD9	99	85.494	Ficedula_albicollis
MGP_SPRETEiJ_G0032483	Chd9	99	90.243	ENSFDAG00000021037	CHD9	99	90.688	Fukomys_damarensis
MGP_SPRETEiJ_G0032483	Chd9	84	69.497	ENSFHEG00000006068	chd9	94	68.500	Fundulus_heteroclitus
MGP_SPRETEiJ_G0032483	Chd9	67	75.984	ENSGMOG00000006040	chd9	81	75.984	Gadus_morhua
MGP_SPRETEiJ_G0032483	Chd9	96	81.730	ENSGALG00000039178	CHD9	99	81.792	Gallus_gallus
MGP_SPRETEiJ_G0032483	Chd9	84	69.528	ENSGAFG00000010014	chd9	98	67.405	Gambusia_affinis
MGP_SPRETEiJ_G0032483	Chd9	79	67.464	ENSGACG00000016694	chd9	68	73.810	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0032483	Chd9	99	90.177	ENSGGOG00000014816	CHD9	98	94.505	Gorilla_gorilla
MGP_SPRETEiJ_G0032483	Chd9	79	69.898	ENSHBUG00000023322	chd9	95	69.930	Haplochromis_burtoni
MGP_SPRETEiJ_G0032483	Chd9	99	90.275	ENSHGLG00000014938	CHD9	99	94.913	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0032483	Chd9	97	60.208	ENSHCOG00000000937	chd9	97	67.808	Hippocampus_comes
MGP_SPRETEiJ_G0032483	Chd9	80	70.440	ENSIPUG00000016448	chd9	97	72.263	Ictalurus_punctatus
MGP_SPRETEiJ_G0032483	Chd9	99	90.388	ENSSTOG00000022273	CHD9	99	95.145	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0032483	Chd9	69	90.854	ENSJJAG00000015741	-	99	91.793	Jaculus_jaculus
MGP_SPRETEiJ_G0032483	Chd9	84	69.881	ENSKMAG00000016784	chd9	96	60.489	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0032483	Chd9	88	64.253	ENSLBEG00000012077	chd9	66	73.029	Labrus_bergylta
MGP_SPRETEiJ_G0032483	Chd9	99	70.260	ENSLACG00000005557	CHD9	99	70.103	Latimeria_chalumnae
MGP_SPRETEiJ_G0032483	Chd9	87	71.179	ENSLOCG00000007225	chd9	68	78.204	Lepisosteus_oculatus
MGP_SPRETEiJ_G0032483	Chd9	99	89.833	ENSLAFG00000015374	CHD9	99	89.972	Loxodonta_africana
MGP_SPRETEiJ_G0032483	Chd9	99	90.076	ENSMFAG00000041354	CHD9	98	94.139	Macaca_fascicularis
MGP_SPRETEiJ_G0032483	Chd9	99	90.076	ENSMMUG00000016310	CHD9	98	94.139	Macaca_mulatta
MGP_SPRETEiJ_G0032483	Chd9	99	90.010	ENSMNEG00000031494	CHD9	100	90.979	Macaca_nemestrina
MGP_SPRETEiJ_G0032483	Chd9	99	90.146	ENSMLEG00000043219	CHD9	98	94.139	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0032483	Chd9	79	70.366	ENSMZEG00005006581	chd9	67	74.242	Maylandia_zebra
MGP_SPRETEiJ_G0032483	Chd9	95	76.770	ENSMGAG00000004642	CHD9	72	78.037	Meleagris_gallopavo
MGP_SPRETEiJ_G0032483	Chd9	99	90.639	ENSMICG00000016679	CHD9	98	94.505	Microcebus_murinus
MGP_SPRETEiJ_G0032483	Chd9	85	69.148	ENSMMOG00000016406	chd9	74	62.409	Mola_mola
MGP_SPRETEiJ_G0032483	Chd9	73	79.528	ENSMODG00000013142	-	99	90.856	Monodelphis_domestica
MGP_SPRETEiJ_G0032483	Chd9	84	69.631	ENSMALG00000013306	chd9	73	62.295	Monopterus_albus
MGP_SPRETEiJ_G0032483	Chd9	100	98.580	MGP_CAROLIEiJ_G0031364	Chd9	100	98.580	Mus_caroli
MGP_SPRETEiJ_G0032483	Chd9	100	99.307	ENSMUSG00000056608	Chd9	100	99.307	Mus_musculus
MGP_SPRETEiJ_G0032483	Chd9	100	95.859	MGP_PahariEiJ_G0022964	Chd9	100	95.859	Mus_pahari
MGP_SPRETEiJ_G0032483	Chd9	99	89.931	ENSMPUG00000003285	CHD9	99	90.312	Mustela_putorius_furo
MGP_SPRETEiJ_G0032483	Chd9	99	89.232	ENSMLUG00000004456	CHD9	99	89.684	Myotis_lucifugus
MGP_SPRETEiJ_G0032483	Chd9	84	68.877	ENSNBRG00000009423	chd9	67	74.050	Neolamprologus_brichardi
MGP_SPRETEiJ_G0032483	Chd9	90	90.805	ENSNLEG00000001026	CHD9	100	91.188	Nomascus_leucogenys
MGP_SPRETEiJ_G0032483	Chd9	76	94.118	ENSMEUG00000008222	-	84	94.118	Notamacropus_eugenii
MGP_SPRETEiJ_G0032483	Chd9	83	100.000	ENSOPRG00000011168	CHD9	85	96.286	Ochotona_princeps
MGP_SPRETEiJ_G0032483	Chd9	99	89.965	ENSODEG00000004466	CHD9	99	89.965	Octodon_degus
MGP_SPRETEiJ_G0032483	Chd9	80	70.865	ENSONIG00000002816	chd9	87	62.338	Oreochromis_niloticus
MGP_SPRETEiJ_G0032483	Chd9	99	83.466	ENSOANG00000013401	CHD9	99	83.778	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0032483	Chd9	83	92.439	ENSOCUG00000001016	CHD9	98	92.941	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0032483	Chd9	84	69.541	ENSORLG00000013810	chd9	67	73.970	Oryzias_latipes
MGP_SPRETEiJ_G0032483	Chd9	84	69.270	ENSORLG00015019126	chd9	99	61.590	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0032483	Chd9	99	90.177	ENSOGAG00000002110	CHD9	99	90.177	Otolemur_garnettii
MGP_SPRETEiJ_G0032483	Chd9	99	89.286	ENSOARG00000017664	CHD9	99	89.528	Ovis_aries
MGP_SPRETEiJ_G0032483	Chd9	82	90.620	ENSPPAG00000039388	-	99	91.122	Pan_paniscus
MGP_SPRETEiJ_G0032483	Chd9	99	89.896	ENSPPRG00000004801	CHD9	98	94.139	Panthera_pardus
MGP_SPRETEiJ_G0032483	Chd9	99	88.889	ENSPTIG00000021854	CHD9	99	89.062	Panthera_tigris_altaica
MGP_SPRETEiJ_G0032483	Chd9	99	90.347	ENSPTRG00000008113	CHD9	98	94.505	Pan_troglodytes
MGP_SPRETEiJ_G0032483	Chd9	99	90.146	ENSPANG00000019307	CHD9	98	94.139	Papio_anubis
MGP_SPRETEiJ_G0032483	Chd9	95	62.549	ENSPKIG00000021876	chd9	68	75.642	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0032483	Chd9	99	58.066	ENSPKIG00000025401	-	71	62.370	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0032483	Chd9	64	81.253	ENSPSIG00000008099	CHD9	99	81.253	Pelodiscus_sinensis
MGP_SPRETEiJ_G0032483	Chd9	59	57.126	ENSPMAG00000006035	-	72	67.309	Petromyzon_marinus
MGP_SPRETEiJ_G0032483	Chd9	89	84.690	ENSPCIG00000017215	CHD9	97	88.491	Phascolarctos_cinereus
MGP_SPRETEiJ_G0032483	Chd9	79	69.643	ENSPFOG00000015839	chd9	96	60.540	Poecilia_formosa
MGP_SPRETEiJ_G0032483	Chd9	84	69.741	ENSPLAG00000011118	chd9	95	69.589	Poecilia_latipinna
MGP_SPRETEiJ_G0032483	Chd9	79	70.095	ENSPMEG00000015106	chd9	96	61.044	Poecilia_mexicana
MGP_SPRETEiJ_G0032483	Chd9	79	70.817	ENSPREG00000006473	chd9	98	67.664	Poecilia_reticulata
MGP_SPRETEiJ_G0032483	Chd9	99	90.174	ENSPPYG00000007348	CHD9	99	90.590	Pongo_abelii
MGP_SPRETEiJ_G0032483	Chd9	78	93.474	ENSPCAG00000007564	CHD9	86	93.474	Procavia_capensis
MGP_SPRETEiJ_G0032483	Chd9	99	89.198	ENSPCOG00000028433	CHD9	98	94.872	Propithecus_coquereli
MGP_SPRETEiJ_G0032483	Chd9	97	86.237	ENSPVAG00000015617	CHD9	97	86.814	Pteropus_vampyrus
MGP_SPRETEiJ_G0032483	Chd9	84	69.941	ENSPNYG00000010947	chd9	67	74.109	Pundamilia_nyererei
MGP_SPRETEiJ_G0032483	Chd9	80	71.361	ENSPNAG00000024141	chd9	99	60.284	Pygocentrus_nattereri
MGP_SPRETEiJ_G0032483	Chd9	90	93.154	ENSRNOG00000049302	Chd9	100	95.099	Rattus_norvegicus
MGP_SPRETEiJ_G0032483	Chd9	83	91.691	ENSRBIG00000035553	CHD9	98	94.139	Rhinopithecus_bieti
MGP_SPRETEiJ_G0032483	Chd9	82	91.614	ENSRROG00000033278	CHD9	98	94.139	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0032483	Chd9	99	90.518	ENSSBOG00000030240	CHD9	98	93.773	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0032483	Chd9	99	83.622	ENSSHAG00000002719	CHD9	99	84.165	Sarcophilus_harrisii
MGP_SPRETEiJ_G0032483	Chd9	86	66.366	ENSSFOG00015001327	chd9	67	75.644	Scleropages_formosus
MGP_SPRETEiJ_G0032483	Chd9	98	62.548	ENSSFOG00015020209	chd9	68	76.360	Scleropages_formosus
MGP_SPRETEiJ_G0032483	Chd9	84	68.753	ENSSMAG00000008953	chd9	99	62.083	Scophthalmus_maximus
MGP_SPRETEiJ_G0032483	Chd9	79	70.128	ENSSDUG00000006139	chd9	67	73.843	Seriola_dumerili
MGP_SPRETEiJ_G0032483	Chd9	79	70.204	ENSSLDG00000017818	chd9	67	73.934	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0032483	Chd9	71	95.205	ENSSARG00000010632	CHD9	71	95.205	Sorex_araneus
MGP_SPRETEiJ_G0032483	Chd9	84	69.873	ENSSPAG00000021649	chd9	67	73.812	Stegastes_partitus
MGP_SPRETEiJ_G0032483	Chd9	99	88.429	ENSSSCG00000033591	CHD9	75	91.437	Sus_scrofa
MGP_SPRETEiJ_G0032483	Chd9	90	81.804	ENSTGUG00000007476	CHD9	100	82.263	Taeniopygia_guttata
MGP_SPRETEiJ_G0032483	Chd9	56	74.571	ENSTRUG00000009125	chd9	73	62.086	Takifugu_rubripes
MGP_SPRETEiJ_G0032483	Chd9	66	62.150	ENSTNIG00000003825	chd9	96	62.150	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0032483	Chd9	66	92.342	ENSTBEG00000016052	-	81	92.342	Tupaia_belangeri
MGP_SPRETEiJ_G0032483	Chd9	90	89.464	ENSTTRG00000012674	CHD9	90	89.847	Tursiops_truncatus
MGP_SPRETEiJ_G0032483	Chd9	64	89.268	ENSUAMG00000022706	CHD9	98	94.505	Ursus_americanus
MGP_SPRETEiJ_G0032483	Chd9	90	88.851	ENSUMAG00000004043	CHD9	98	97.015	Ursus_maritimus
MGP_SPRETEiJ_G0032483	Chd9	97	90.010	ENSVPAG00000001374	CHD9	97	90.539	Vicugna_pacos
MGP_SPRETEiJ_G0032483	Chd9	99	90.385	ENSVVUG00000019435	CHD9	99	90.524	Vulpes_vulpes
MGP_SPRETEiJ_G0032483	Chd9	99	71.064	ENSXETG00000000349	chd9	96	74.467	Xenopus_tropicalis
MGP_SPRETEiJ_G0032483	Chd9	79	70.429	ENSXCOG00000012997	chd9	95	69.789	Xiphophorus_couchianus
MGP_SPRETEiJ_G0032483	Chd9	79	69.593	ENSXMAG00000016192	chd9	95	69.099	Xiphophorus_maculatus