EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0032540 (Gene tree)
Gene ID: -
Gene Symbol: Usb1
Alias: AA960436
Full Name: U6 snRNA biogenesis 1
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 17957 bases
Position: chr8:94586932-94604888
Accession: 2142454
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0089166	HVSL	PF09749.9	7.2e-65	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0089165	-	871	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0089167	-	526	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0089166	-	1689	-	MGP_SPRETEiJ_P0089166	267 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0032540's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0032540's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0032540	Usb1	100	79.775	ENSG00000103005	USB1	100	83.645	Homo_sapiens
MGP_SPRETEiJ_G0032540	Usb1	98	48.746	ENSAPOG00000011942	usb1	99	48.746	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0032540	Usb1	100	78.810	ENSAMEG00000017205	USB1	100	78.810	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0032540	Usb1	85	55.310	ENSACIG00000012234	usb1	99	52.963	Amphilophus_citrinellus
MGP_SPRETEiJ_G0032540	Usb1	85	53.509	ENSAOCG00000014831	usb1	99	48.754	Amphiprion_ocellaris
MGP_SPRETEiJ_G0032540	Usb1	85	53.947	ENSAPEG00000000296	usb1	99	49.110	Amphiprion_percula
MGP_SPRETEiJ_G0032540	Usb1	95	50.593	ENSATEG00000009348	usb1	99	49.286	Anabas_testudineus
MGP_SPRETEiJ_G0032540	Usb1	84	67.257	ENSAPLG00000002756	USB1	100	67.257	Anas_platyrhynchos
MGP_SPRETEiJ_G0032540	Usb1	85	62.882	ENSACAG00000015481	USB1	100	62.882	Anolis_carolinensis
MGP_SPRETEiJ_G0032540	Usb1	100	80.899	ENSANAG00000035640	USB1	100	80.899	Aotus_nancymaae
MGP_SPRETEiJ_G0032540	Usb1	84	54.911	ENSACLG00000020586	usb1	99	48.929	Astatotilapia_calliptera
MGP_SPRETEiJ_G0032540	Usb1	84	52.000	ENSAMXG00000040146	usb1	95	47.405	Astyanax_mexicanus
MGP_SPRETEiJ_G0032540	Usb1	100	79.775	ENSBTAG00000015758	USB1	100	79.775	Bos_taurus
MGP_SPRETEiJ_G0032540	Usb1	100	80.899	ENSCJAG00000011733	USB1	100	80.899	Callithrix_jacchus
MGP_SPRETEiJ_G0032540	Usb1	99	77.574	ENSCAFG00000008556	USB1	73	77.574	Canis_familiaris
MGP_SPRETEiJ_G0032540	Usb1	99	79.104	ENSCAFG00020009263	USB1	99	79.104	Canis_lupus_dingo
MGP_SPRETEiJ_G0032540	Usb1	100	77.903	ENSCHIG00000024290	USB1	100	77.903	Capra_hircus
MGP_SPRETEiJ_G0032540	Usb1	100	80.524	ENSTSYG00000006997	USB1	100	81.648	Carlito_syrichta
MGP_SPRETEiJ_G0032540	Usb1	87	67.241	ENSCAPG00000009057	USB1	100	67.241	Cavia_aperea
MGP_SPRETEiJ_G0032540	Usb1	100	79.478	ENSCPOG00000014325	USB1	100	79.478	Cavia_porcellus
MGP_SPRETEiJ_G0032540	Usb1	100	81.648	ENSCCAG00000022132	USB1	100	81.648	Cebus_capucinus
MGP_SPRETEiJ_G0032540	Usb1	100	80.150	ENSCATG00000032174	USB1	100	80.899	Cercocebus_atys
MGP_SPRETEiJ_G0032540	Usb1	66	84.091	ENSCLAG00000007363	USB1	100	84.091	Chinchilla_lanigera
MGP_SPRETEiJ_G0032540	Usb1	100	80.150	ENSCSAG00000004783	USB1	100	80.899	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0032540	Usb1	90	63.333	ENSCPBG00000026943	USB1	100	60.215	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0032540	Usb1	82	32.000	ENSCSAVG00000000894	-	81	32.000	Ciona_savignyi
MGP_SPRETEiJ_G0032540	Usb1	100	78.652	ENSCANG00000037135	USB1	100	79.401	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0032540	Usb1	100	88.060	ENSCGRG00001011243	USB1	100	88.060	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0032540	Usb1	100	88.060	ENSCGRG00000013252	USB1	100	88.060	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0032540	Usb1	98	47.636	ENSCSEG00000013881	usb1	99	47.636	Cynoglossus_semilaevis
MGP_SPRETEiJ_G0032540	Usb1	84	47.391	ENSCVAG00000009252	usb1	97	48.684	Cyprinodon_variegatus
MGP_SPRETEiJ_G0032540	Usb1	90	48.117	ENSDARG00000003841	usb1	99	45.091	Danio_rerio
MGP_SPRETEiJ_G0032540	Usb1	100	81.273	ENSDORG00000001888	Usb1	100	81.273	Dipodomys_ordii
MGP_SPRETEiJ_G0032540	Usb1	76	38.942	FBgn0037713	CG16790	78	39.130	Drosophila_melanogaster
MGP_SPRETEiJ_G0032540	Usb1	100	66.667	ENSETEG00000019682	USB1	100	66.667	Echinops_telfairi
MGP_SPRETEiJ_G0032540	Usb1	83	50.000	ENSEBUG00000005889	usb1	78	48.276	Eptatretus_burgeri
MGP_SPRETEiJ_G0032540	Usb1	100	82.397	ENSEASG00005005484	USB1	100	82.397	Equus_asinus_asinus
MGP_SPRETEiJ_G0032540	Usb1	100	81.648	ENSECAG00000019493	USB1	91	81.648	Equus_caballus
MGP_SPRETEiJ_G0032540	Usb1	66	75.568	ENSEEUG00000000154	USB1	66	75.568	Erinaceus_europaeus
MGP_SPRETEiJ_G0032540	Usb1	91	48.770	ENSELUG00000010974	usb1	99	46.237	Esox_lucius
MGP_SPRETEiJ_G0032540	Usb1	100	80.899	ENSFCAG00000002693	USB1	100	80.899	Felis_catus
MGP_SPRETEiJ_G0032540	Usb1	99	58.113	ENSFALG00000006876	USB1	99	58.113	Ficedula_albicollis
MGP_SPRETEiJ_G0032540	Usb1	100	80.899	ENSFDAG00000010052	USB1	100	80.899	Fukomys_damarensis
MGP_SPRETEiJ_G0032540	Usb1	85	46.748	ENSFHEG00000012334	usb1	96	47.154	Fundulus_heteroclitus
MGP_SPRETEiJ_G0032540	Usb1	84	52.915	ENSGMOG00000004228	usb1	99	52.915	Gadus_morhua
MGP_SPRETEiJ_G0032540	Usb1	84	65.625	ENSGALG00000035604	USB1	99	61.278	Gallus_gallus
MGP_SPRETEiJ_G0032540	Usb1	98	49.818	ENSGAFG00000021890	usb1	99	49.818	Gambusia_affinis
MGP_SPRETEiJ_G0032540	Usb1	97	47.692	ENSGACG00000003257	usb1	99	49.821	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0032540	Usb1	100	62.774	ENSGAGG00000022572	USB1	100	62.774	Gopherus_agassizii
MGP_SPRETEiJ_G0032540	Usb1	100	80.150	ENSGGOG00000017147	USB1	100	80.150	Gorilla_gorilla
MGP_SPRETEiJ_G0032540	Usb1	85	55.066	ENSHBUG00000009823	usb1	99	49.104	Haplochromis_burtoni
MGP_SPRETEiJ_G0032540	Usb1	100	81.648	ENSHGLG00000016078	USB1	98	81.648	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0032540	Usb1	100	81.648	ENSHGLG00100005562	USB1	98	81.648	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0032540	Usb1	81	55.556	ENSHCOG00000015633	usb1	99	52.290	Hippocampus_comes
MGP_SPRETEiJ_G0032540	Usb1	98	46.735	ENSIPUG00000008601	usb1	99	46.735	Ictalurus_punctatus
MGP_SPRETEiJ_G0032540	Usb1	100	79.853	ENSSTOG00000007548	USB1	100	80.220	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0032540	Usb1	100	86.142	ENSJJAG00000021859	Usb1	100	86.142	Jaculus_jaculus
MGP_SPRETEiJ_G0032540	Usb1	85	51.982	ENSKMAG00000007200	usb1	99	47.143	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0032540	Usb1	74	54.545	ENSLBEG00000008452	usb1	64	55.263	Labrus_bergylta
MGP_SPRETEiJ_G0032540	Usb1	77	61.538	ENSLACG00000000105	USB1	92	53.933	Latimeria_chalumnae
MGP_SPRETEiJ_G0032540	Usb1	96	52.529	ENSLOCG00000000465	usb1	99	51.246	Lepisosteus_oculatus
MGP_SPRETEiJ_G0032540	Usb1	100	67.037	ENSLAFG00000002267	USB1	100	67.407	Loxodonta_africana
MGP_SPRETEiJ_G0032540	Usb1	100	80.150	ENSMFAG00000003926	USB1	100	80.899	Macaca_fascicularis
MGP_SPRETEiJ_G0032540	Usb1	100	80.150	ENSMMUG00000022669	USB1	100	80.899	Macaca_mulatta
MGP_SPRETEiJ_G0032540	Usb1	100	79.775	ENSMNEG00000042487	USB1	100	80.524	Macaca_nemestrina
MGP_SPRETEiJ_G0032540	Usb1	100	80.150	ENSMLEG00000028756	USB1	100	80.899	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0032540	Usb1	98	50.360	ENSMAMG00000015092	usb1	99	50.360	Mastacembelus_armatus
MGP_SPRETEiJ_G0032540	Usb1	84	54.911	ENSMZEG00005010008	usb1	99	49.104	Maylandia_zebra
MGP_SPRETEiJ_G0032540	Usb1	100	87.266	ENSMAUG00000007832	Usb1	100	87.266	Mesocricetus_auratus
MGP_SPRETEiJ_G0032540	Usb1	100	79.401	ENSMICG00000004900	USB1	100	80.150	Microcebus_murinus
MGP_SPRETEiJ_G0032540	Usb1	100	88.015	ENSMOCG00000022647	Usb1	100	88.015	Microtus_ochrogaster
MGP_SPRETEiJ_G0032540	Usb1	85	52.655	ENSMMOG00000000490	usb1	99	50.000	Mola_mola
MGP_SPRETEiJ_G0032540	Usb1	100	65.314	ENSMODG00000014067	USB1	100	67.159	Monodelphis_domestica
MGP_SPRETEiJ_G0032540	Usb1	85	51.316	ENSMALG00000005930	usb1	99	48.043	Monopterus_albus
MGP_SPRETEiJ_G0032540	Usb1	100	97.378	MGP_CAROLIEiJ_G0031421	Usb1	100	97.378	Mus_caroli
MGP_SPRETEiJ_G0032540	Usb1	100	97.753	ENSMUSG00000031792	Usb1	100	97.753	Mus_musculus
MGP_SPRETEiJ_G0032540	Usb1	100	95.131	MGP_PahariEiJ_G0023019	Usb1	100	95.131	Mus_pahari
MGP_SPRETEiJ_G0032540	Usb1	100	78.439	ENSMPUG00000004684	USB1	96	78.810	Mustela_putorius_furo
MGP_SPRETEiJ_G0032540	Usb1	87	83.550	ENSMLUG00000007400	USB1	100	83.550	Myotis_lucifugus
MGP_SPRETEiJ_G0032540	Usb1	100	86.617	ENSNGAG00000009703	Usb1	100	86.617	Nannospalax_galili
MGP_SPRETEiJ_G0032540	Usb1	87	49.569	ENSNBRG00000008747	usb1	99	53.738	Neolamprologus_brichardi
MGP_SPRETEiJ_G0032540	Usb1	94	79.365	ENSNLEG00000003340	USB1	100	79.365	Nomascus_leucogenys
MGP_SPRETEiJ_G0032540	Usb1	57	60.131	ENSMEUG00000003328	-	100	62.179	Notamacropus_eugenii
MGP_SPRETEiJ_G0032540	Usb1	63	94.118	ENSOPRG00000011803	USB1	72	94.118	Ochotona_princeps
MGP_SPRETEiJ_G0032540	Usb1	100	79.026	ENSODEG00000016214	USB1	100	79.026	Octodon_degus
MGP_SPRETEiJ_G0032540	Usb1	98	50.179	ENSONIG00000011063	usb1	99	49.821	Oreochromis_niloticus
MGP_SPRETEiJ_G0032540	Usb1	84	70.667	ENSOANG00000012118	USB1	94	70.667	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0032540	Usb1	85	50.877	ENSORLG00000012479	usb1	99	48.162	Oryzias_latipes
MGP_SPRETEiJ_G0032540	Usb1	85	50.877	ENSORLG00020018671	usb1	99	47.426	Oryzias_latipes_hni
MGP_SPRETEiJ_G0032540	Usb1	85	50.877	ENSORLG00015009679	usb1	99	47.794	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0032540	Usb1	85	50.877	ENSOMEG00000012930	usb1	99	48.000	Oryzias_melastigma
MGP_SPRETEiJ_G0032540	Usb1	100	73.408	ENSOGAG00000003273	USB1	100	74.157	Otolemur_garnettii
MGP_SPRETEiJ_G0032540	Usb1	92	77.642	ENSOARG00000001107	USB1	94	77.642	Ovis_aries
MGP_SPRETEiJ_G0032540	Usb1	100	80.524	ENSPPAG00000042137	USB1	100	80.524	Pan_paniscus
MGP_SPRETEiJ_G0032540	Usb1	100	80.524	ENSPPRG00000024797	USB1	100	80.524	Panthera_pardus
MGP_SPRETEiJ_G0032540	Usb1	100	80.524	ENSPTIG00000007506	USB1	100	80.524	Panthera_tigris_altaica
MGP_SPRETEiJ_G0032540	Usb1	100	73.034	ENSPTRG00000008172	USB1	100	84.112	Pan_troglodytes
MGP_SPRETEiJ_G0032540	Usb1	100	80.150	ENSPANG00000025138	USB1	100	80.899	Papio_anubis
MGP_SPRETEiJ_G0032540	Usb1	96	49.035	ENSPKIG00000015109	usb1	84	49.035	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0032540	Usb1	84	49.778	ENSPSIG00000004305	USB1	100	49.778	Pelodiscus_sinensis
MGP_SPRETEiJ_G0032540	Usb1	84	52.444	ENSPMGG00000017725	usb1	98	49.425	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0032540	Usb1	100	87.500	ENSPEMG00000016183	Usb1	100	87.500	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0032540	Usb1	91	48.780	ENSPMAG00000000462	usb1	99	48.780	Petromyzon_marinus
MGP_SPRETEiJ_G0032540	Usb1	98	47.143	ENSPFOG00000011130	usb1	99	48.551	Poecilia_formosa
MGP_SPRETEiJ_G0032540	Usb1	98	48.561	ENSPLAG00000009820	usb1	99	48.551	Poecilia_latipinna
MGP_SPRETEiJ_G0032540	Usb1	98	47.842	ENSPMEG00000006402	usb1	99	49.275	Poecilia_mexicana
MGP_SPRETEiJ_G0032540	Usb1	85	49.587	ENSPREG00000001047	usb1	98	50.413	Poecilia_reticulata
MGP_SPRETEiJ_G0032540	Usb1	95	76.378	ENSPPYG00000007401	USB1	100	76.378	Pongo_abelii
MGP_SPRETEiJ_G0032540	Usb1	100	80.150	ENSPCOG00000022612	USB1	100	80.899	Propithecus_coquereli
MGP_SPRETEiJ_G0032540	Usb1	100	77.903	ENSPVAG00000004613	USB1	100	77.903	Pteropus_vampyrus
MGP_SPRETEiJ_G0032540	Usb1	85	55.066	ENSPNYG00000022262	usb1	99	49.104	Pundamilia_nyererei
MGP_SPRETEiJ_G0032540	Usb1	84	52.679	ENSPNAG00000011736	usb1	99	46.416	Pygocentrus_nattereri
MGP_SPRETEiJ_G0032540	Usb1	100	91.386	ENSRNOG00000013216	Usb1	100	91.386	Rattus_norvegicus
MGP_SPRETEiJ_G0032540	Usb1	100	73.408	ENSRBIG00000044466	USB1	100	85.514	Rhinopithecus_bieti
MGP_SPRETEiJ_G0032540	Usb1	100	79.775	ENSRROG00000029211	USB1	100	80.524	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0032540	Usb1	100	80.899	ENSSBOG00000029362	USB1	100	80.899	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0032540	Usb1	82	71.689	ENSSHAG00000006993	USB1	100	67.188	Sarcophilus_harrisii
MGP_SPRETEiJ_G0032540	Usb1	93	52.610	ENSSFOG00015023663	usb1	78	52.610	Scleropages_formosus
MGP_SPRETEiJ_G0032540	Usb1	98	48.639	ENSSMAG00000015834	usb1	99	48.639	Scophthalmus_maximus
MGP_SPRETEiJ_G0032540	Usb1	85	54.867	ENSSDUG00000002949	usb1	99	49.638	Seriola_dumerili
MGP_SPRETEiJ_G0032540	Usb1	95	50.593	ENSSLDG00000014174	usb1	99	49.104	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0032540	Usb1	80	65.888	ENSSPUG00000006741	USB1	100	65.888	Sphenodon_punctatus
MGP_SPRETEiJ_G0032540	Usb1	98	46.643	ENSSPAG00000007484	usb1	99	46.643	Stegastes_partitus
MGP_SPRETEiJ_G0032540	Usb1	100	80.297	ENSSSCG00000002807	USB1	100	80.297	Sus_scrofa
MGP_SPRETEiJ_G0032540	Usb1	79	66.038	ENSTGUG00000004792	USB1	99	60.755	Taeniopygia_guttata
MGP_SPRETEiJ_G0032540	Usb1	98	48.327	ENSTRUG00000021069	usb1	99	48.327	Takifugu_rubripes
MGP_SPRETEiJ_G0032540	Usb1	99	47.547	ENSTNIG00000000626	usb1	99	47.547	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0032540	Usb1	87	60.345	ENSTBEG00000001507	USB1	100	60.345	Tupaia_belangeri
MGP_SPRETEiJ_G0032540	Usb1	100	78.439	ENSUAMG00000016823	USB1	100	78.810	Ursus_americanus
MGP_SPRETEiJ_G0032540	Usb1	80	82.243	ENSUMAG00000021369	USB1	100	82.243	Ursus_maritimus
MGP_SPRETEiJ_G0032540	Usb1	77	55.610	ENSVPAG00000009834	-	100	55.610	Vicugna_pacos
MGP_SPRETEiJ_G0032540	Usb1	99	79.104	ENSVVUG00000023700	USB1	90	80.753	Vulpes_vulpes
MGP_SPRETEiJ_G0032540	Usb1	81	57.339	ENSXETG00000013795	usb1	99	52.290	Xenopus_tropicalis
MGP_SPRETEiJ_G0032540	Usb1	85	53.509	ENSXMAG00000024687	usb1	80	50.204	Xiphophorus_maculatus