EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0032788 (Gene tree)
Gene ID: -
Gene Symbol: Pabpn1l
Alias: LOC382035|ePABP2
Full Name: poly(A)binding protein nuclear 1-like
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 3293 bases
Position: chr8:123387629-123390921
Accession: 2685954
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0089909	RRM_1	PF00076.22	2.1e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0089909	-	1148	-	MGP_SPRETEiJ_P0089909	273 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0032788's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0032788's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0032788	Pabpn1l	51	55.102	MGP_SPRETEiJ_G0020166	Pabpn1	92	50.314
MGP_SPRETEiJ_G0032788	Pabpn1l	51	55.944	MGP_SPRETEiJ_G0020165	Gm20521	57	46.193

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0032788	Pabpn1l	100	65.950	ENSG00000205022	PABPN1L	100	65.950	Homo_sapiens
MGP_SPRETEiJ_G0032788	Pabpn1l	53	55.102	ENSAPOG00000000685	PABPN1L	62	47.739	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0032788	Pabpn1l	53	53.741	ENSACIG00000021400	PABPN1L	85	53.750	Amphilophus_citrinellus
MGP_SPRETEiJ_G0032788	Pabpn1l	58	52.201	ENSATEG00000011646	PABPN1L	75	47.716	Anabas_testudineus
MGP_SPRETEiJ_G0032788	Pabpn1l	71	54.592	ENSACAG00000013250	PABPN1L	100	54.592	Anolis_carolinensis
MGP_SPRETEiJ_G0032788	Pabpn1l	100	61.733	ENSANAG00000038178	PABPN1L	100	63.177	Aotus_nancymaae
MGP_SPRETEiJ_G0032788	Pabpn1l	58	50.617	ENSACLG00000025147	PABPN1L	76	46.190	Astatotilapia_calliptera
MGP_SPRETEiJ_G0032788	Pabpn1l	58	54.430	ENSAMXG00000010873	PABPN1L	71	51.323	Astyanax_mexicanus
MGP_SPRETEiJ_G0032788	Pabpn1l	100	62.366	ENSBTAG00000023752	-	100	63.441	Bos_taurus
MGP_SPRETEiJ_G0032788	Pabpn1l	51	71.942	ENSBTAG00000006727	-	85	71.942	Bos_taurus
MGP_SPRETEiJ_G0032788	Pabpn1l	100	61.455	ENSCJAG00000045284	PABPN1L	100	64.130	Callithrix_jacchus
MGP_SPRETEiJ_G0032788	Pabpn1l	100	61.538	ENSCHIG00000013987	PABPN1L	100	61.538	Capra_hircus
MGP_SPRETEiJ_G0032788	Pabpn1l	95	61.940	ENSCAPG00000007240	PABPN1L	100	62.313	Cavia_aperea
MGP_SPRETEiJ_G0032788	Pabpn1l	100	62.774	ENSCPOG00000025951	PABPN1L	100	63.139	Cavia_porcellus
MGP_SPRETEiJ_G0032788	Pabpn1l	100	62.094	ENSCCAG00000027631	PABPN1L	100	63.538	Cebus_capucinus
MGP_SPRETEiJ_G0032788	Pabpn1l	100	64.727	ENSCATG00000031060	PABPN1L	100	66.304	Cercocebus_atys
MGP_SPRETEiJ_G0032788	Pabpn1l	100	64.234	ENSCLAG00000000704	PABPN1L	100	64.234	Chinchilla_lanigera
MGP_SPRETEiJ_G0032788	Pabpn1l	100	62.671	ENSCSAG00000002881	PABPN1L	100	63.356	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0032788	Pabpn1l	60	57.831	ENSCPBG00000023441	PABPN1L	61	53.960	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0032788	Pabpn1l	100	62.319	ENSCANG00000039336	PABPN1L	100	64.621	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0032788	Pabpn1l	100	78.182	ENSCGRG00001013211	Pabpn1l	100	80.364	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0032788	Pabpn1l	100	78.182	ENSCGRG00000015868	Pabpn1l	100	80.364	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0032788	Pabpn1l	100	50.179	ENSDNOG00000034677	PABPN1L	100	55.124	Dasypus_novemcinctus
MGP_SPRETEiJ_G0032788	Pabpn1l	100	64.388	ENSEASG00005000777	PABPN1L	100	64.388	Equus_asinus_asinus
MGP_SPRETEiJ_G0032788	Pabpn1l	100	64.748	ENSECAG00000000378	PABPN1L	100	64.748	Equus_caballus
MGP_SPRETEiJ_G0032788	Pabpn1l	100	59.124	ENSEEUG00000004747	PABPN1L	100	59.124	Erinaceus_europaeus
MGP_SPRETEiJ_G0032788	Pabpn1l	54	57.047	ENSELUG00000018385	PABPN1L	67	48.663	Esox_lucius
MGP_SPRETEiJ_G0032788	Pabpn1l	100	62.724	ENSFCAG00000010465	PABPN1L	100	62.724	Felis_catus
MGP_SPRETEiJ_G0032788	Pabpn1l	72	52.792	ENSFALG00000003319	PABPN1L	79	52.792	Ficedula_albicollis
MGP_SPRETEiJ_G0032788	Pabpn1l	100	67.518	ENSFDAG00000021067	PABPN1L	100	67.518	Fukomys_damarensis
MGP_SPRETEiJ_G0032788	Pabpn1l	59	49.383	ENSFHEG00000018295	PABPN1L	76	47.642	Fundulus_heteroclitus
MGP_SPRETEiJ_G0032788	Pabpn1l	53	60.135	ENSGALG00000006242	PABPN1L	84	60.135	Gallus_gallus
MGP_SPRETEiJ_G0032788	Pabpn1l	65	54.098	ENSGAGG00000010613	PABPN1L	60	54.098	Gopherus_agassizii
MGP_SPRETEiJ_G0032788	Pabpn1l	100	65.091	ENSGGOG00000012670	PABPN1L	100	66.667	Gorilla_gorilla
MGP_SPRETEiJ_G0032788	Pabpn1l	58	50.617	ENSHBUG00000002388	PABPN1L	76	45.755	Haplochromis_burtoni
MGP_SPRETEiJ_G0032788	Pabpn1l	96	66.031	ENSHGLG00000014207	PABPN1L	100	66.031	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0032788	Pabpn1l	96	66.031	ENSHGLG00100005230	PABPN1L	100	66.031	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0032788	Pabpn1l	100	64.894	ENSSTOG00000020814	PABPN1L	100	64.894	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0032788	Pabpn1l	100	68.727	ENSJJAG00000006433	Pabpn1l	100	68.727	Jaculus_jaculus
MGP_SPRETEiJ_G0032788	Pabpn1l	71	60.406	ENSLAFG00000025902	-	78	60.406	Loxodonta_africana
MGP_SPRETEiJ_G0032788	Pabpn1l	100	64.000	ENSMFAG00000002924	PABPN1L	100	65.580	Macaca_fascicularis
MGP_SPRETEiJ_G0032788	Pabpn1l	100	63.636	ENSMMUG00000012438	PABPN1L	100	65.217	Macaca_mulatta
MGP_SPRETEiJ_G0032788	Pabpn1l	100	64.000	ENSMNEG00000044808	PABPN1L	100	65.580	Macaca_nemestrina
MGP_SPRETEiJ_G0032788	Pabpn1l	100	64.727	ENSMLEG00000032667	PABPN1L	100	66.304	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0032788	Pabpn1l	58	50.617	ENSMZEG00005002186	PABPN1L	76	46.190	Maylandia_zebra
MGP_SPRETEiJ_G0032788	Pabpn1l	100	78.909	ENSMAUG00000014032	Pabpn1l	100	80.989	Mesocricetus_auratus
MGP_SPRETEiJ_G0032788	Pabpn1l	100	65.455	ENSMICG00000028179	PABPN1L	100	65.455	Microcebus_murinus
MGP_SPRETEiJ_G0032788	Pabpn1l	100	77.289	ENSMOCG00000007955	Pabpn1l	100	77.289	Microtus_ochrogaster
MGP_SPRETEiJ_G0032788	Pabpn1l	99	51.273	ENSMODG00000003873	-	99	52.190	Monodelphis_domestica
MGP_SPRETEiJ_G0032788	Pabpn1l	100	97.436	MGP_CAROLIEiJ_G0031670	Pabpn1l	100	97.436	Mus_caroli
MGP_SPRETEiJ_G0032788	Pabpn1l	100	98.168	ENSMUSG00000069867	Pabpn1l	100	98.168	Mus_musculus
MGP_SPRETEiJ_G0032788	Pabpn1l	100	93.040	MGP_PahariEiJ_G0023268	Pabpn1l	100	93.040	Mus_pahari
MGP_SPRETEiJ_G0032788	Pabpn1l	96	48.736	ENSMLUG00000003228	PABPN1L	95	48.736	Myotis_lucifugus
MGP_SPRETEiJ_G0032788	Pabpn1l	100	75.547	ENSNGAG00000023992	Pabpn1l	100	75.547	Nannospalax_galili
MGP_SPRETEiJ_G0032788	Pabpn1l	58	50.311	ENSNBRG00000017078	PABPN1L	78	47.208	Neolamprologus_brichardi
MGP_SPRETEiJ_G0032788	Pabpn1l	100	66.426	ENSOPRG00000005597	PABPN1L	100	66.426	Ochotona_princeps
MGP_SPRETEiJ_G0032788	Pabpn1l	100	58.392	ENSODEG00000004649	PABPN1L	100	58.392	Octodon_degus
MGP_SPRETEiJ_G0032788	Pabpn1l	98	51.264	ENSOANG00000013901	PABPN1L	98	52.963	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0032788	Pabpn1l	75	47.847	ENSORLG00000026560	PABPN1L	76	47.847	Oryzias_latipes
MGP_SPRETEiJ_G0032788	Pabpn1l	75	47.847	ENSORLG00020015068	PABPN1L	76	47.847	Oryzias_latipes_hni
MGP_SPRETEiJ_G0032788	Pabpn1l	75	47.847	ENSORLG00015000397	PABPN1L	76	47.847	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0032788	Pabpn1l	80	45.045	ENSOMEG00000017896	PABPN1L	58	45.045	Oryzias_melastigma
MGP_SPRETEiJ_G0032788	Pabpn1l	100	62.545	ENSOGAG00000000433	PABPN1L	100	62.545	Otolemur_garnettii
MGP_SPRETEiJ_G0032788	Pabpn1l	100	60.066	ENSOARG00000013682	PABPN1L	100	61.056	Ovis_aries
MGP_SPRETEiJ_G0032788	Pabpn1l	100	65.591	ENSPPAG00000028866	PABPN1L	100	65.950	Pan_paniscus
MGP_SPRETEiJ_G0032788	Pabpn1l	100	62.724	ENSPPRG00000015106	PABPN1L	100	62.724	Panthera_pardus
MGP_SPRETEiJ_G0032788	Pabpn1l	93	59.533	ENSPTIG00000015606	PABPN1L	100	59.533	Panthera_tigris_altaica
MGP_SPRETEiJ_G0032788	Pabpn1l	100	65.591	ENSPTRG00000031120	PABPN1L	100	65.950	Pan_troglodytes
MGP_SPRETEiJ_G0032788	Pabpn1l	100	64.364	ENSPANG00000026039	PABPN1L	100	65.942	Papio_anubis
MGP_SPRETEiJ_G0032788	Pabpn1l	70	50.952	ENSPSIG00000003404	PABPN1L	100	53.333	Pelodiscus_sinensis
MGP_SPRETEiJ_G0032788	Pabpn1l	100	77.372	ENSPEMG00000016624	Pabpn1l	100	77.372	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0032788	Pabpn1l	52	63.636	ENSPCIG00000007038	-	99	63.636	Phascolarctos_cinereus
MGP_SPRETEiJ_G0032788	Pabpn1l	100	65.108	ENSPPYG00000007655	PABPN1L	100	65.724	Pongo_abelii
MGP_SPRETEiJ_G0032788	Pabpn1l	100	64.364	ENSPCOG00000024077	PABPN1L	100	64.727	Propithecus_coquereli
MGP_SPRETEiJ_G0032788	Pabpn1l	100	63.830	ENSPVAG00000002716	PABPN1L	100	64.894	Pteropus_vampyrus
MGP_SPRETEiJ_G0032788	Pabpn1l	58	50.617	ENSPNYG00000004803	PABPN1L	76	46.190	Pundamilia_nyererei
MGP_SPRETEiJ_G0032788	Pabpn1l	100	85.348	ENSRNOG00000029558	Pabpn1l	100	85.348	Rattus_norvegicus
MGP_SPRETEiJ_G0032788	Pabpn1l	100	65.091	ENSRBIG00000030740	PABPN1L	100	66.667	Rhinopithecus_bieti
MGP_SPRETEiJ_G0032788	Pabpn1l	99	63.869	ENSRROG00000035483	-	99	65.091	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0032788	Pabpn1l	100	65.942	ENSRROG00000032240	-	100	65.942	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0032788	Pabpn1l	100	61.232	ENSSBOG00000018410	PABPN1L	100	63.538	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0032788	Pabpn1l	99	48.639	ENSSHAG00000010001	-	99	48.639	Sarcophilus_harrisii
MGP_SPRETEiJ_G0032788	Pabpn1l	89	51.220	ENSSARG00000005178	-	96	51.220	Sorex_araneus
MGP_SPRETEiJ_G0032788	Pabpn1l	70	54.872	ENSSPUG00000007031	PABPN1L	84	55.102	Sphenodon_punctatus
MGP_SPRETEiJ_G0032788	Pabpn1l	53	54.422	ENSSPAG00000017978	PABPN1L	76	45.024	Stegastes_partitus
MGP_SPRETEiJ_G0032788	Pabpn1l	100	60.714	ENSSSCG00000036367	PABPN1L	100	64.621	Sus_scrofa
MGP_SPRETEiJ_G0032788	Pabpn1l	64	45.856	ENSTRUG00000024725	PABPN1L	74	46.774	Takifugu_rubripes
MGP_SPRETEiJ_G0032788	Pabpn1l	100	60.791	ENSTTRG00000004691	PABPN1L	100	63.082	Tursiops_truncatus