EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0033078 (Gene tree)
Gene ID: -
Gene Symbol: Rpusd4
Alias: 2410001E19Rik
Full Name: RNA pseudouridylate synthase domain containing 4
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 9919 bases
Position: chr9:33045325-33055243
Accession: 1919239
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0090766	PseudoU_synth_2	PF00849.22	3.9e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0090769	-	509	-	MGP_SPRETEiJ_P0090769	34 (aa)	-	-
MGP_SPRETEiJ_T0090768	-	495	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0090767	-	795	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0090766	-	1821	-	MGP_SPRETEiJ_P0090766	377 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0033078's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0033078's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0033078	Rpusd4	70	34.043	MGP_SPRETEiJ_G0029753	Rpusd3	78	34.043

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0033078	Rpusd4	100	78.780	ENSG00000165526	RPUSD4	100	78.780	Homo_sapiens
MGP_SPRETEiJ_G0033078	Rpusd4	89	49.123	ENSAPOG00000011024	rpusd4	85	49.123	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0033078	Rpusd4	100	77.719	ENSAMEG00000000127	-	100	77.719	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0033078	Rpusd4	80	86.290	ENSAMEG00000005953	-	100	86.290	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0033078	Rpusd4	90	48.105	ENSACIG00000003533	rpusd4	99	48.105	Amphilophus_citrinellus
MGP_SPRETEiJ_G0033078	Rpusd4	87	50.599	ENSAOCG00000015409	rpusd4	82	50.599	Amphiprion_ocellaris
MGP_SPRETEiJ_G0033078	Rpusd4	88	50.445	ENSAPEG00000018935	rpusd4	83	50.445	Amphiprion_percula
MGP_SPRETEiJ_G0033078	Rpusd4	96	48.509	ENSATEG00000008059	rpusd4	89	48.509	Anabas_testudineus
MGP_SPRETEiJ_G0033078	Rpusd4	73	60.573	ENSAPLG00000013250	RPUSD4	99	59.322	Anas_platyrhynchos
MGP_SPRETEiJ_G0033078	Rpusd4	97	60.598	ENSACAG00000000189	RPUSD4	100	60.598	Anolis_carolinensis
MGP_SPRETEiJ_G0033078	Rpusd4	99	80.645	ENSANAG00000024050	RPUSD4	100	80.645	Aotus_nancymaae
MGP_SPRETEiJ_G0033078	Rpusd4	91	51.297	ENSACLG00000020996	rpusd4	87	51.297	Astatotilapia_calliptera
MGP_SPRETEiJ_G0033078	Rpusd4	91	49.138	ENSAMXG00000031479	rpusd4	95	49.852	Astyanax_mexicanus
MGP_SPRETEiJ_G0033078	Rpusd4	98	74.462	ENSBTAG00000020900	RPUSD4	98	74.462	Bos_taurus
MGP_SPRETEiJ_G0033078	Rpusd4	98	80.270	ENSCJAG00000042850	RPUSD4	93	80.270	Callithrix_jacchus
MGP_SPRETEiJ_G0033078	Rpusd4	100	78.307	ENSCAFG00000010488	RPUSD4	100	78.307	Canis_familiaris
MGP_SPRETEiJ_G0033078	Rpusd4	100	78.307	ENSCAFG00020010621	RPUSD4	100	78.307	Canis_lupus_dingo
MGP_SPRETEiJ_G0033078	Rpusd4	98	75.335	ENSCHIG00000009975	RPUSD4	98	75.335	Capra_hircus
MGP_SPRETEiJ_G0033078	Rpusd4	98	81.892	ENSTSYG00000008456	RPUSD4	98	81.892	Carlito_syrichta
MGP_SPRETEiJ_G0033078	Rpusd4	68	79.845	ENSCAPG00000006040	RPUSD4	100	79.845	Cavia_aperea
MGP_SPRETEiJ_G0033078	Rpusd4	100	78.515	ENSCPOG00000014971	RPUSD4	100	78.515	Cavia_porcellus
MGP_SPRETEiJ_G0033078	Rpusd4	99	81.183	ENSCCAG00000027838	RPUSD4	100	81.183	Cebus_capucinus
MGP_SPRETEiJ_G0033078	Rpusd4	100	79.841	ENSCATG00000041570	RPUSD4	100	79.841	Cercocebus_atys
MGP_SPRETEiJ_G0033078	Rpusd4	100	79.841	ENSCLAG00000016553	RPUSD4	100	79.841	Chinchilla_lanigera
MGP_SPRETEiJ_G0033078	Rpusd4	100	79.841	ENSCSAG00000002274	RPUSD4	100	79.841	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0033078	Rpusd4	74	83.571	ENSCHOG00000010249	RPUSD4	99	83.571	Choloepus_hoffmanni
MGP_SPRETEiJ_G0033078	Rpusd4	75	68.070	ENSCPBG00000011175	RPUSD4	98	68.070	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0033078	Rpusd4	70	43.015	ENSCSAVG00000000872	-	53	43.015	Ciona_savignyi
MGP_SPRETEiJ_G0033078	Rpusd4	100	79.045	ENSCANG00000039684	RPUSD4	100	79.045	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0033078	Rpusd4	100	89.390	ENSCGRG00001024141	Rpusd4	100	89.390	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0033078	Rpusd4	100	89.390	ENSCGRG00000014415	Rpusd4	100	89.390	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0033078	Rpusd4	88	50.296	ENSCVAG00000000392	rpusd4	95	50.296	Cyprinodon_variegatus
MGP_SPRETEiJ_G0033078	Rpusd4	88	50.000	ENSCVAG00000008761	rpusd4	86	50.000	Cyprinodon_variegatus
MGP_SPRETEiJ_G0033078	Rpusd4	85	50.613	ENSDARG00000012674	rpusd4	91	50.613	Danio_rerio
MGP_SPRETEiJ_G0033078	Rpusd4	100	76.240	ENSDNOG00000020026	RPUSD4	100	76.240	Dasypus_novemcinctus
MGP_SPRETEiJ_G0033078	Rpusd4	98	80.863	ENSDORG00000016717	Rpusd4	98	80.863	Dipodomys_ordii
MGP_SPRETEiJ_G0033078	Rpusd4	99	77.867	ENSETEG00000013953	RPUSD4	99	77.867	Echinops_telfairi
MGP_SPRETEiJ_G0033078	Rpusd4	100	79.045	ENSEASG00005022982	RPUSD4	100	79.045	Equus_asinus_asinus
MGP_SPRETEiJ_G0033078	Rpusd4	100	79.045	ENSECAG00000000557	RPUSD4	100	79.045	Equus_caballus
MGP_SPRETEiJ_G0033078	Rpusd4	80	80.435	ENSEEUG00000014036	RPUSD4	80	80.435	Erinaceus_europaeus
MGP_SPRETEiJ_G0033078	Rpusd4	93	51.934	ENSELUG00000008075	rpusd4	95	51.934	Esox_lucius
MGP_SPRETEiJ_G0033078	Rpusd4	100	77.984	ENSFCAG00000029789	RPUSD4	100	77.984	Felis_catus
MGP_SPRETEiJ_G0033078	Rpusd4	89	57.817	ENSFALG00000005171	RPUSD4	99	57.817	Ficedula_albicollis
MGP_SPRETEiJ_G0033078	Rpusd4	99	80.914	ENSFDAG00000014307	RPUSD4	99	80.914	Fukomys_damarensis
MGP_SPRETEiJ_G0033078	Rpusd4	96	47.425	ENSFHEG00000004329	rpusd4	94	47.425	Fundulus_heteroclitus
MGP_SPRETEiJ_G0033078	Rpusd4	85	51.682	ENSGMOG00000017726	rpusd4	96	51.682	Gadus_morhua
MGP_SPRETEiJ_G0033078	Rpusd4	92	55.462	ENSGALG00000024326	RPUSD4	100	56.233	Gallus_gallus
MGP_SPRETEiJ_G0033078	Rpusd4	95	46.883	ENSGAFG00000021559	rpusd4	93	46.883	Gambusia_affinis
MGP_SPRETEiJ_G0033078	Rpusd4	87	49.401	ENSGACG00000001657	rpusd4	98	49.401	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0033078	Rpusd4	88	63.881	ENSGAGG00000000132	RPUSD4	93	63.881	Gopherus_agassizii
MGP_SPRETEiJ_G0033078	Rpusd4	100	78.249	ENSGGOG00000016494	RPUSD4	100	78.249	Gorilla_gorilla
MGP_SPRETEiJ_G0033078	Rpusd4	91	51.297	ENSHBUG00000022838	rpusd4	87	51.297	Haplochromis_burtoni
MGP_SPRETEiJ_G0033078	Rpusd4	100	80.371	ENSHGLG00000002285	RPUSD4	100	80.371	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0033078	Rpusd4	100	80.371	ENSHGLG00100006385	RPUSD4	100	80.371	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0033078	Rpusd4	86	50.915	ENSHCOG00000006612	rpusd4	83	50.915	Hippocampus_comes
MGP_SPRETEiJ_G0033078	Rpusd4	86	52.744	ENSIPUG00000023879	rusd4	85	52.744	Ictalurus_punctatus
MGP_SPRETEiJ_G0033078	Rpusd4	97	80.495	ENSSTOG00000025280	RPUSD4	100	80.495	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0033078	Rpusd4	99	83.333	ENSJJAG00000018673	Rpusd4	100	83.333	Jaculus_jaculus
MGP_SPRETEiJ_G0033078	Rpusd4	85	53.067	ENSKMAG00000021805	rpusd4	84	53.067	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0033078	Rpusd4	86	51.829	ENSLBEG00000020394	rpusd4	91	51.829	Labrus_bergylta
MGP_SPRETEiJ_G0033078	Rpusd4	85	61.111	ENSLACG00000011028	RPUSD4	94	56.300	Latimeria_chalumnae
MGP_SPRETEiJ_G0033078	Rpusd4	86	47.720	ENSLOCG00000003124	rpusd4	88	47.720	Lepisosteus_oculatus
MGP_SPRETEiJ_G0033078	Rpusd4	99	78.610	ENSLAFG00000005211	RPUSD4	99	78.610	Loxodonta_africana
MGP_SPRETEiJ_G0033078	Rpusd4	100	79.841	ENSMFAG00000039513	RPUSD4	100	79.841	Macaca_fascicularis
MGP_SPRETEiJ_G0033078	Rpusd4	100	79.576	ENSMMUG00000007933	RPUSD4	100	79.576	Macaca_mulatta
MGP_SPRETEiJ_G0033078	Rpusd4	100	79.576	ENSMNEG00000027414	RPUSD4	100	79.576	Macaca_nemestrina
MGP_SPRETEiJ_G0033078	Rpusd4	100	79.576	ENSMLEG00000042461	RPUSD4	100	79.576	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0033078	Rpusd4	87	49.552	ENSMAMG00000023839	rpusd4	86	49.552	Mastacembelus_armatus
MGP_SPRETEiJ_G0033078	Rpusd4	91	51.297	ENSMZEG00005011999	rpusd4	87	51.297	Maylandia_zebra
MGP_SPRETEiJ_G0033078	Rpusd4	74	61.071	ENSMGAG00000000840	RPUSD4	99	58.025	Meleagris_gallopavo
MGP_SPRETEiJ_G0033078	Rpusd4	100	87.003	ENSMAUG00000010280	Rpusd4	100	87.003	Mesocricetus_auratus
MGP_SPRETEiJ_G0033078	Rpusd4	99	79.679	ENSMICG00000015979	RPUSD4	94	86.174	Microcebus_murinus
MGP_SPRETEiJ_G0033078	Rpusd4	99	86.170	ENSMOCG00000000661	Rpusd4	99	86.170	Microtus_ochrogaster
MGP_SPRETEiJ_G0033078	Rpusd4	82	52.381	ENSMMOG00000021731	rpusd4	93	52.381	Mola_mola
MGP_SPRETEiJ_G0033078	Rpusd4	86	74.847	ENSMODG00000004521	RPUSD4	84	74.847	Monodelphis_domestica
MGP_SPRETEiJ_G0033078	Rpusd4	80	51.623	ENSMALG00000005839	rpusd4	97	50.311	Monopterus_albus
MGP_SPRETEiJ_G0033078	Rpusd4	100	97.613	MGP_CAROLIEiJ_G0031954	Rpusd4	100	97.613	Mus_caroli
MGP_SPRETEiJ_G0033078	Rpusd4	100	98.408	ENSMUSG00000032044	Rpusd4	100	98.408	Mus_musculus
MGP_SPRETEiJ_G0033078	Rpusd4	100	95.756	MGP_PahariEiJ_G0014819	Rpusd4	100	95.756	Mus_pahari
MGP_SPRETEiJ_G0033078	Rpusd4	98	76.550	ENSMPUG00000006608	RPUSD4	99	76.550	Mustela_putorius_furo
MGP_SPRETEiJ_G0033078	Rpusd4	89	83.582	ENSMLUG00000017328	-	96	78.356	Myotis_lucifugus
MGP_SPRETEiJ_G0033078	Rpusd4	67	83.858	ENSMLUG00000029348	-	100	83.858	Myotis_lucifugus
MGP_SPRETEiJ_G0033078	Rpusd4	99	82.713	ENSNGAG00000020847	Rpusd4	99	82.713	Nannospalax_galili
MGP_SPRETEiJ_G0033078	Rpusd4	86	52.888	ENSNBRG00000005207	rpusd4	95	52.888	Neolamprologus_brichardi
MGP_SPRETEiJ_G0033078	Rpusd4	99	80.376	ENSNLEG00000007465	RPUSD4	99	80.376	Nomascus_leucogenys
MGP_SPRETEiJ_G0033078	Rpusd4	97	69.505	ENSMEUG00000004370	RPUSD4	98	69.505	Notamacropus_eugenii
MGP_SPRETEiJ_G0033078	Rpusd4	65	61.224	ENSOPRG00000013141	-	92	61.224	Ochotona_princeps
MGP_SPRETEiJ_G0033078	Rpusd4	100	79.045	ENSODEG00000004577	RPUSD4	100	79.045	Octodon_degus
MGP_SPRETEiJ_G0033078	Rpusd4	94	51.111	ENSONIG00000018879	rpusd4	96	51.111	Oreochromis_niloticus
MGP_SPRETEiJ_G0033078	Rpusd4	82	66.454	ENSOANG00000007247	RPUSD4	100	66.454	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0033078	Rpusd4	94	83.708	ENSOCUG00000017039	RPUSD4	94	83.708	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0033078	Rpusd4	91	48.851	ENSORLG00000002750	rpusd4	94	49.133	Oryzias_latipes
MGP_SPRETEiJ_G0033078	Rpusd4	92	48.295	ENSORLG00020002044	rpusd4	85	48.295	Oryzias_latipes_hni
MGP_SPRETEiJ_G0033078	Rpusd4	92	49.435	ENSORLG00015020034	rpusd4	81	51.070	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0033078	Rpusd4	86	50.909	ENSOMEG00000004861	rpusd4	81	50.909	Oryzias_melastigma
MGP_SPRETEiJ_G0033078	Rpusd4	99	77.540	ENSOGAG00000008922	RPUSD4	93	81.481	Otolemur_garnettii
MGP_SPRETEiJ_G0033078	Rpusd4	93	78.470	ENSOARG00000012238	RPUSD4	93	78.470	Ovis_aries
MGP_SPRETEiJ_G0033078	Rpusd4	100	79.045	ENSPPAG00000042883	RPUSD4	88	82.353	Pan_paniscus
MGP_SPRETEiJ_G0033078	Rpusd4	100	77.984	ENSPPRG00000003081	RPUSD4	100	77.984	Panthera_pardus
MGP_SPRETEiJ_G0033078	Rpusd4	100	77.984	ENSPTIG00000012059	RPUSD4	100	77.984	Panthera_tigris_altaica
MGP_SPRETEiJ_G0033078	Rpusd4	95	82.353	ENSPTRG00000004454	RPUSD4	95	82.353	Pan_troglodytes
MGP_SPRETEiJ_G0033078	Rpusd4	100	79.841	ENSPANG00000015040	RPUSD4	100	79.841	Papio_anubis
MGP_SPRETEiJ_G0033078	Rpusd4	88	57.784	ENSPKIG00000023986	rpusd4	85	57.784	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0033078	Rpusd4	79	66.667	ENSPSIG00000014268	RPUSD4	95	66.667	Pelodiscus_sinensis
MGP_SPRETEiJ_G0033078	Rpusd4	90	48.256	ENSPMGG00000002806	rpusd4	95	48.256	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0033078	Rpusd4	100	80.371	ENSPEMG00000000278	Rpusd4	100	80.371	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0033078	Rpusd4	81	45.000	ENSPMAG00000008183	rpusd4	98	45.000	Petromyzon_marinus
MGP_SPRETEiJ_G0033078	Rpusd4	89	73.653	ENSPCIG00000010212	RPUSD4	92	73.653	Phascolarctos_cinereus
MGP_SPRETEiJ_G0033078	Rpusd4	87	49.706	ENSPFOG00000019030	rpusd4	89	49.706	Poecilia_formosa
MGP_SPRETEiJ_G0033078	Rpusd4	87	50.296	ENSPLAG00000016848	rpusd4	86	50.296	Poecilia_latipinna
MGP_SPRETEiJ_G0033078	Rpusd4	87	49.112	ENSPMEG00000017534	rpusd4	86	49.112	Poecilia_mexicana
MGP_SPRETEiJ_G0033078	Rpusd4	91	48.442	ENSPREG00000005689	rpusd4	89	48.442	Poecilia_reticulata
MGP_SPRETEiJ_G0033078	Rpusd4	100	79.045	ENSPPYG00000004043	RPUSD4	100	79.045	Pongo_abelii
MGP_SPRETEiJ_G0033078	Rpusd4	80	78.378	ENSPCAG00000000753	RPUSD4	81	78.804	Procavia_capensis
MGP_SPRETEiJ_G0033078	Rpusd4	98	73.315	ENSPCOG00000020694	RPUSD4	100	73.315	Propithecus_coquereli
MGP_SPRETEiJ_G0033078	Rpusd4	99	81.016	ENSPVAG00000000988	RPUSD4	99	81.016	Pteropus_vampyrus
MGP_SPRETEiJ_G0033078	Rpusd4	91	50.144	ENSPNYG00000009652	rpusd4	87	50.144	Pundamilia_nyererei
MGP_SPRETEiJ_G0033078	Rpusd4	92	50.857	ENSPNAG00000012264	rpusd4	92	50.857	Pygocentrus_nattereri
MGP_SPRETEiJ_G0033078	Rpusd4	100	92.573	ENSRNOG00000011567	Rpusd4	100	92.573	Rattus_norvegicus
MGP_SPRETEiJ_G0033078	Rpusd4	96	81.717	ENSRBIG00000034842	RPUSD4	100	80.106	Rhinopithecus_bieti
MGP_SPRETEiJ_G0033078	Rpusd4	96	81.717	ENSRROG00000039753	RPUSD4	100	80.106	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0033078	Rpusd4	99	80.645	ENSSBOG00000030413	RPUSD4	100	80.645	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0033078	Rpusd4	80	73.841	ENSSHAG00000008304	RPUSD4	100	73.841	Sarcophilus_harrisii
MGP_SPRETEiJ_G0033078	Rpusd4	90	55.491	ENSSFOG00015006203	rpusd4	93	55.780	Scleropages_formosus
MGP_SPRETEiJ_G0033078	Rpusd4	91	50.144	ENSSMAG00000020978	rpusd4	90	50.144	Scophthalmus_maximus
MGP_SPRETEiJ_G0033078	Rpusd4	89	48.387	ENSSDUG00000013399	rpusd4	89	48.387	Seriola_dumerili
MGP_SPRETEiJ_G0033078	Rpusd4	89	48.680	ENSSLDG00000023507	rpusd4	89	48.680	Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0033078	Rpusd4	91	61.272	ENSSPUG00000001401	RPUSD4	96	61.850	Sphenodon_punctatus
MGP_SPRETEiJ_G0033078	Rpusd4	96	49.189	ENSSPAG00000012163	rpusd4	93	49.189	Stegastes_partitus
MGP_SPRETEiJ_G0033078	Rpusd4	99	79.088	ENSSSCG00000015233	RPUSD4	99	79.088	Sus_scrofa
MGP_SPRETEiJ_G0033078	Rpusd4	79	61.333	ENSTGUG00000000773	RPUSD4	100	61.333	Taeniopygia_guttata
MGP_SPRETEiJ_G0033078	Rpusd4	86	50.909	ENSTRUG00000012283	rpusd4	84	50.909	Takifugu_rubripes
MGP_SPRETEiJ_G0033078	Rpusd4	86	49.697	ENSTNIG00000014676	rpusd4	84	49.697	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0033078	Rpusd4	100	76.923	ENSTTRG00000001555	RPUSD4	100	76.923	Tursiops_truncatus
MGP_SPRETEiJ_G0033078	Rpusd4	100	77.188	ENSUMAG00000002219	RPUSD4	100	77.188	Ursus_maritimus
MGP_SPRETEiJ_G0033078	Rpusd4	70	80.755	ENSVPAG00000001066	RPUSD4	100	80.755	Vicugna_pacos
MGP_SPRETEiJ_G0033078	Rpusd4	100	78.307	ENSVVUG00000020101	RPUSD4	100	78.307	Vulpes_vulpes
MGP_SPRETEiJ_G0033078	Rpusd4	87	50.148	ENSXCOG00000004676	rpusd4	88	49.852	Xiphophorus_couchianus
MGP_SPRETEiJ_G0033078	Rpusd4	87	50.148	ENSXMAG00000023351	rpusd4	86	50.148	Xiphophorus_maculatus