EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0033350 (Gene tree)
Gene ID: -
Gene Symbol: Zc3h12c
Alias: C230027N18Rik
Full Name: zinc finger CCCH type containing 12C
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Minus strand
Length: 59926 bases
Position: chr9:50821452-50881377
Accession: 3026959
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0091459	RNase_Zc3h12a	PF11977.8	6.5e-65	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0091458	-	1143	-	MGP_SPRETEiJ_P0091458	324 (aa)	-	-
MGP_SPRETEiJ_T0091459	-	6125	-	MGP_SPRETEiJ_P0091459	903 (aa)	-	-
MGP_SPRETEiJ_T0091460	-	2655	-	MGP_SPRETEiJ_P0091460	884 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0033350's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0033350's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0033350	Zc3h12c	50	36.957	MGP_SPRETEiJ_G0015911	Zc3h12d	58	59.283
MGP_SPRETEiJ_G0033350	Zc3h12c	92	51.891	MGP_SPRETEiJ_G0034413	Zc3h12b	99	51.891
MGP_SPRETEiJ_G0033350	Zc3h12c	50	44.298	MGP_SPRETEiJ_G0027441	Zc3h12a	84	64.103

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0033350	Zc3h12c	99	92.588	ENSG00000149289	ZC3H12C	100	92.723	Homo_sapiens
MGP_SPRETEiJ_G0033350	Zc3h12c	99	92.466	ENSAMEG00000009188	ZC3H12C	99	92.466	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0033350	Zc3h12c	71	87.840	ENSAPLG00000002854	ZC3H12C	100	87.840	Anas_platyrhynchos
MGP_SPRETEiJ_G0033350	Zc3h12c	99	82.260	ENSACAG00000001031	ZC3H12C	98	82.260	Anolis_carolinensis
MGP_SPRETEiJ_G0033350	Zc3h12c	99	92.816	ENSANAG00000026999	ZC3H12C	99	92.816	Aotus_nancymaae
MGP_SPRETEiJ_G0033350	Zc3h12c	100	90.734	ENSBTAG00000008732	ZC3H12C	100	90.734	Bos_taurus
MGP_SPRETEiJ_G0033350	Zc3h12c	99	92.474	ENSCJAG00000010319	ZC3H12C	99	92.474	Callithrix_jacchus
MGP_SPRETEiJ_G0033350	Zc3h12c	99	89.510	ENSCAFG00000014297	ZC3H12C	99	89.510	Canis_familiaris
MGP_SPRETEiJ_G0033350	Zc3h12c	99	89.510	ENSCAFG00020006999	ZC3H12C	99	89.205	Canis_lupus_dingo
MGP_SPRETEiJ_G0033350	Zc3h12c	100	90.960	ENSCHIG00000021221	ZC3H12C	100	90.960	Capra_hircus
MGP_SPRETEiJ_G0033350	Zc3h12c	95	90.658	ENSTSYG00000005412	ZC3H12C	99	90.798	Carlito_syrichta
MGP_SPRETEiJ_G0033350	Zc3h12c	99	89.408	ENSCAPG00000011610	ZC3H12C	99	89.612	Cavia_aperea
MGP_SPRETEiJ_G0033350	Zc3h12c	99	89.498	ENSCPOG00000032962	ZC3H12C	99	89.498	Cavia_porcellus
MGP_SPRETEiJ_G0033350	Zc3h12c	100	92.647	ENSCCAG00000022395	ZC3H12C	100	92.840	Cebus_capucinus
MGP_SPRETEiJ_G0033350	Zc3h12c	100	92.308	ENSCATG00000041641	ZC3H12C	100	92.308	Cercocebus_atys
MGP_SPRETEiJ_G0033350	Zc3h12c	99	92.466	ENSCLAG00000012577	ZC3H12C	100	92.606	Chinchilla_lanigera
MGP_SPRETEiJ_G0033350	Zc3h12c	100	91.855	ENSCSAG00000002945	ZC3H12C	100	91.855	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0033350	Zc3h12c	97	100.000	ENSCHOG00000013202	-	100	85.294	Choloepus_hoffmanni
MGP_SPRETEiJ_G0033350	Zc3h12c	99	83.805	ENSCPBG00000021043	ZC3H12C	100	84.346	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0033350	Zc3h12c	99	92.237	ENSCANG00000040994	ZC3H12C	99	92.237	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0033350	Zc3h12c	100	96.041	ENSCGRG00001013672	Zc3h12c	100	96.041	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0033350	Zc3h12c	99	96.009	ENSCGRG00000001308	Zc3h12c	100	96.009	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0033350	Zc3h12c	99	89.636	ENSDNOG00000013040	ZC3H12C	99	89.636	Dasypus_novemcinctus
MGP_SPRETEiJ_G0033350	Zc3h12c	99	91.096	ENSDORG00000009134	Zc3h12c	99	91.096	Dipodomys_ordii
MGP_SPRETEiJ_G0033350	Zc3h12c	71	95.680	ENSETEG00000008027	ZC3H12C	100	95.680	Echinops_telfairi
MGP_SPRETEiJ_G0033350	Zc3h12c	100	92.308	ENSEASG00005010098	ZC3H12C	100	92.308	Equus_asinus_asinus
MGP_SPRETEiJ_G0033350	Zc3h12c	99	92.246	ENSECAG00000000462	ZC3H12C	100	92.371	Equus_caballus
MGP_SPRETEiJ_G0033350	Zc3h12c	64	90.702	ENSEEUG00000005709	-	99	90.702	Erinaceus_europaeus
MGP_SPRETEiJ_G0033350	Zc3h12c	99	90.878	ENSFCAG00000010665	ZC3H12C	99	90.878	Felis_catus
MGP_SPRETEiJ_G0033350	Zc3h12c	99	82.731	ENSFALG00000008776	ZC3H12C	99	82.786	Ficedula_albicollis
MGP_SPRETEiJ_G0033350	Zc3h12c	99	92.580	ENSFDAG00000017997	ZC3H12C	100	93.075	Fukomys_damarensis
MGP_SPRETEiJ_G0033350	Zc3h12c	96	82.964	ENSGALG00000017154	ZC3H12C	100	82.964	Gallus_gallus
MGP_SPRETEiJ_G0033350	Zc3h12c	95	82.619	ENSGAGG00000024154	ZC3H12C	86	82.994	Gopherus_agassizii
MGP_SPRETEiJ_G0033350	Zc3h12c	99	92.588	ENSGGOG00000010117	ZC3H12C	99	92.588	Gorilla_gorilla
MGP_SPRETEiJ_G0033350	Zc3h12c	100	92.760	ENSHGLG00000019021	ZC3H12C	100	92.760	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0033350	Zc3h12c	100	92.760	ENSHGLG00100007295	ZC3H12C	100	92.760	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0033350	Zc3h12c	100	94.241	ENSSTOG00000022143	ZC3H12C	100	94.977	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0033350	Zc3h12c	99	93.950	ENSJJAG00000001147	Zc3h12c	100	93.950	Jaculus_jaculus
MGP_SPRETEiJ_G0033350	Zc3h12c	99	74.888	ENSLACG00000009305	ZC3H12C	99	74.888	Latimeria_chalumnae
MGP_SPRETEiJ_G0033350	Zc3h12c	71	95.056	ENSLAFG00000016296	ZC3H12C	100	95.056	Loxodonta_africana
MGP_SPRETEiJ_G0033350	Zc3h12c	100	92.308	ENSMFAG00000042068	ZC3H12C	100	92.308	Macaca_fascicularis
MGP_SPRETEiJ_G0033350	Zc3h12c	99	92.474	ENSMMUG00000048435	ZC3H12C	99	92.474	Macaca_mulatta
MGP_SPRETEiJ_G0033350	Zc3h12c	100	92.308	ENSMNEG00000032663	ZC3H12C	100	92.606	Macaca_nemestrina
MGP_SPRETEiJ_G0033350	Zc3h12c	99	92.360	ENSMLEG00000032083	ZC3H12C	99	92.360	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0033350	Zc3h12c	99	81.767	ENSMGAG00000015143	ZC3H12C	99	81.859	Meleagris_gallopavo
MGP_SPRETEiJ_G0033350	Zc3h12c	100	94.912	ENSMAUG00000020412	Zc3h12c	100	94.912	Mesocricetus_auratus
MGP_SPRETEiJ_G0033350	Zc3h12c	100	93.326	ENSMICG00000011455	ZC3H12C	100	93.779	Microcebus_murinus
MGP_SPRETEiJ_G0033350	Zc3h12c	100	96.235	ENSMOCG00000020090	Zc3h12c	100	96.235	Microtus_ochrogaster
MGP_SPRETEiJ_G0033350	Zc3h12c	96	88.201	ENSMODG00000014555	ZC3H12C	100	88.201	Monodelphis_domestica
MGP_SPRETEiJ_G0033350	Zc3h12c	100	98.671	MGP_CAROLIEiJ_G0032210	Zc3h12c	100	98.671	Mus_caroli
MGP_SPRETEiJ_G0033350	Zc3h12c	100	99.336	ENSMUSG00000035164	Zc3h12c	100	99.336	Mus_musculus
MGP_SPRETEiJ_G0033350	Zc3h12c	100	97.172	MGP_PahariEiJ_G0015078	Zc3h12c	100	97.172	Mus_pahari
MGP_SPRETEiJ_G0033350	Zc3h12c	100	86.600	ENSMPUG00000005888	ZC3H12C	100	86.600	Mustela_putorius_furo
MGP_SPRETEiJ_G0033350	Zc3h12c	99	91.553	ENSMLUG00000017189	ZC3H12C	100	91.553	Myotis_lucifugus
MGP_SPRETEiJ_G0033350	Zc3h12c	100	93.688	ENSNGAG00000023957	Zc3h12c	100	93.688	Nannospalax_galili
MGP_SPRETEiJ_G0033350	Zc3h12c	99	92.702	ENSNLEG00000029829	ZC3H12C	99	92.702	Nomascus_leucogenys
MGP_SPRETEiJ_G0033350	Zc3h12c	99	84.414	ENSMEUG00000015398	ZC3H12C	100	84.414	Notamacropus_eugenii
MGP_SPRETEiJ_G0033350	Zc3h12c	74	81.413	ENSOPRG00000003370	-	98	81.413	Ochotona_princeps
MGP_SPRETEiJ_G0033350	Zc3h12c	99	89.636	ENSODEG00000011026	ZC3H12C	100	89.636	Octodon_degus
MGP_SPRETEiJ_G0033350	Zc3h12c	71	84.494	ENSOANG00000006242	-	99	84.494	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0033350	Zc3h12c	99	92.930	ENSOCUG00000005283	ZC3H12C	99	92.930	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0033350	Zc3h12c	99	92.360	ENSOGAG00000013223	ZC3H12C	99	92.360	Otolemur_garnettii
MGP_SPRETEiJ_G0033350	Zc3h12c	99	86.788	ENSOARG00000012999	ZC3H12C	97	92.112	Ovis_aries
MGP_SPRETEiJ_G0033350	Zc3h12c	99	92.816	ENSPPAG00000041914	ZC3H12C	99	92.816	Pan_paniscus
MGP_SPRETEiJ_G0033350	Zc3h12c	99	90.650	ENSPPRG00000006582	ZC3H12C	99	90.650	Panthera_pardus
MGP_SPRETEiJ_G0033350	Zc3h12c	86	88.162	ENSPTIG00000009995	ZC3H12C	99	88.162	Panthera_tigris_altaica
MGP_SPRETEiJ_G0033350	Zc3h12c	99	92.816	ENSPTRG00000050494	ZC3H12C	99	92.816	Pan_troglodytes
MGP_SPRETEiJ_G0033350	Zc3h12c	100	92.308	ENSPANG00000023930	ZC3H12C	100	92.308	Papio_anubis
MGP_SPRETEiJ_G0033350	Zc3h12c	96	82.870	ENSPSIG00000005959	ZC3H12C	100	83.333	Pelodiscus_sinensis
MGP_SPRETEiJ_G0033350	Zc3h12c	100	86.869	ENSPEMG00000008502	Zc3h12c	100	95.269	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0033350	Zc3h12c	96	88.201	ENSPCIG00000022169	ZC3H12C	100	88.201	Phascolarctos_cinereus
MGP_SPRETEiJ_G0033350	Zc3h12c	96	92.606	ENSPPYG00000003851	ZC3H12C	100	92.606	Pongo_abelii
MGP_SPRETEiJ_G0033350	Zc3h12c	64	94.386	ENSPCAG00000015682	ZC3H12C	100	94.386	Procavia_capensis
MGP_SPRETEiJ_G0033350	Zc3h12c	99	93.615	ENSPCOG00000024737	ZC3H12C	99	93.615	Propithecus_coquereli
MGP_SPRETEiJ_G0033350	Zc3h12c	99	90.568	ENSPVAG00000014329	ZC3H12C	99	90.568	Pteropus_vampyrus
MGP_SPRETEiJ_G0033350	Zc3h12c	100	96.678	ENSRNOG00000012470	Zc3h12c	100	96.678	Rattus_norvegicus
MGP_SPRETEiJ_G0033350	Zc3h12c	99	92.352	ENSRBIG00000040441	ZC3H12C	100	92.371	Rhinopithecus_bieti
MGP_SPRETEiJ_G0033350	Zc3h12c	99	92.352	ENSRROG00000004335	ZC3H12C	99	92.352	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0033350	Zc3h12c	99	93.044	ENSSBOG00000025582	ZC3H12C	100	93.075	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0033350	Zc3h12c	99	85.244	ENSSHAG00000005597	ZC3H12C	100	87.967	Sarcophilus_harrisii
MGP_SPRETEiJ_G0033350	Zc3h12c	71	95.534	ENSSARG00000003433	ZC3H12C	100	95.534	Sorex_araneus
MGP_SPRETEiJ_G0033350	Zc3h12c	99	84.773	ENSSPUG00000001832	ZC3H12C	99	84.773	Sphenodon_punctatus
MGP_SPRETEiJ_G0033350	Zc3h12c	100	92.655	ENSSSCG00000015014	ZC3H12C	100	92.966	Sus_scrofa
MGP_SPRETEiJ_G0033350	Zc3h12c	72	86.250	ENSTGUG00000011244	ZC3H12C	100	86.250	Taeniopygia_guttata
MGP_SPRETEiJ_G0033350	Zc3h12c	99	92.466	ENSTTRG00000005096	ZC3H12C	100	92.466	Tursiops_truncatus
MGP_SPRETEiJ_G0033350	Zc3h12c	99	93.037	ENSUAMG00000006051	ZC3H12C	99	92.948	Ursus_americanus
MGP_SPRETEiJ_G0033350	Zc3h12c	99	92.605	ENSUMAG00000007283	ZC3H12C	99	92.605	Ursus_maritimus
MGP_SPRETEiJ_G0033350	Zc3h12c	88	90.720	ENSVPAG00000003110	ZC3H12C	88	90.720	Vicugna_pacos
MGP_SPRETEiJ_G0033350	Zc3h12c	78	67.405	ENSVVUG00000015552	-	97	92.698	Vulpes_vulpes
MGP_SPRETEiJ_G0033350	Zc3h12c	99	69.854	ENSXETG00000033837	ZC3H12C	99	70.434	Xenopus_tropicalis