EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
MGP_SPRETEiJ_G0033678 (Gene tree)
Gene ID
-
Gene Symbol
Xrn1
Alias
Dhm2|mXrn1
Full Name
5'-3' exoribonuclease 1
Gene Type
protein_coding
Species
Mus_spretus
Status
putative
Strand
Plus strand
Length
109165 bases
Position
chr9:96248563-96357727
Accession
891964
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
MGP_SPRETEiJ_P0092814XRN_NPF03159.183e-9611
MGP_SPRETEiJ_P0092809XRN_NPF03159.186.2e-9611
MGP_SPRETEiJ_P0092810XRN_NPF03159.186.3e-9611
MGP_SPRETEiJ_P0092811XRN_NPF03159.189.3e-1311
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
MGP_SPRETEiJ_T0092809-5499-MGP_SPRETEiJ_P00928091723 (aa)--
MGP_SPRETEiJ_T0092815-3574--- (aa)--
MGP_SPRETEiJ_T0092814-3093-MGP_SPRETEiJ_P0092814969 (aa)--
MGP_SPRETEiJ_T0092817-3035--- (aa)--
MGP_SPRETEiJ_T0092816-824--- (aa)--
MGP_SPRETEiJ_T0092811-357-MGP_SPRETEiJ_P009281140 (aa)-UPI000462120E
MGP_SPRETEiJ_T0092810-10264-MGP_SPRETEiJ_P00928101719 (aa)--
MGP_SPRETEiJ_T0092813-6240--- (aa)--
MGP_SPRETEiJ_T0092812-3375--- (aa)--
Gene Model
Click here to download MGP_SPRETEiJ_G0033678's gene model file
Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0033678's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
MGP_SPRETEiJ_G0033678Xrn19066.667MGP_SPRETEiJ_G0025318Xrn28440.625
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSG00000114127XRN110098.788Homo_sapiens
MGP_SPRETEiJ_G0033678Xrn110090.000ENSAPOG00000000622xrn19476.891Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0033678Xrn110097.500ENSAMEG00000012538XRN110088.324Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0033678Xrn110087.805ENSACIG00000001057xrn19872.104Amphilophus_citrinellus
MGP_SPRETEiJ_G0033678Xrn110092.500ENSAOCG00000014097xrn19871.212Amphiprion_ocellaris
MGP_SPRETEiJ_G0033678Xrn110092.500ENSAPEG00000006620xrn19172.472Amphiprion_percula
MGP_SPRETEiJ_G0033678Xrn110092.500ENSATEG00000009752xrn19970.827Anabas_testudineus
MGP_SPRETEiJ_G0033678Xrn110097.500ENSAPLG00000004905XRN110073.868Anas_platyrhynchos
MGP_SPRETEiJ_G0033678Xrn110097.500ENSACAG00000004985XRN110071.171Anolis_carolinensis
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSANAG00000029013XRN19993.905Aotus_nancymaae
MGP_SPRETEiJ_G0033678Xrn110090.000ENSACLG00000004806xrn19960.089Astatotilapia_calliptera
MGP_SPRETEiJ_G0033678Xrn110095.000ENSAMXG00000019370xrn19594.175Astyanax_mexicanus
MGP_SPRETEiJ_G0033678Xrn110097.500ENSBTAG00000011524XRN110085.189Bos_taurus
MGP_SPRETEiJ_G0033678Xrn110067.500WBGene00012730xrn-17838.941Caenorhabditis_elegans
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSCJAG00000001872XRN110086.308Callithrix_jacchus
MGP_SPRETEiJ_G0033678Xrn110097.500ENSCAFG00000007783XRN110088.330Canis_familiaris
MGP_SPRETEiJ_G0033678Xrn110097.500ENSCAFG00020009120XRN19992.791Canis_lupus_dingo
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSCHIG00000019192XRN19987.638Capra_hircus
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSTSYG00000002705XRN110086.952Carlito_syrichta
MGP_SPRETEiJ_G0033678Xrn110097.500ENSCAPG00000004604-9975.622Cavia_aperea
MGP_SPRETEiJ_G0033678Xrn153100.000ENSCPOG00000035199-100100.000Cavia_porcellus
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSCCAG00000034800XRN19995.880Cebus_capucinus
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSCATG00000041794XRN110086.886Cercocebus_atys
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSCLAG00000001451XRN19994.929Chinchilla_lanigera
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSCSAG00000011265XRN110086.181Chlorocebus_sabaeus
MGP_SPRETEiJ_G0033678Xrn16098.701ENSCHOG00000013961-6298.701Choloepus_hoffmanni
MGP_SPRETEiJ_G0033678Xrn110085.000ENSCING00000001334-9570.652Ciona_intestinalis
MGP_SPRETEiJ_G0033678Xrn110085.000ENSCSAVG00000008584-9844.950Ciona_savignyi
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSCANG00000037495XRN19995.880Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSCGRG00001019411Xrn19998.257Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSCGRG00000012464Xrn19998.257Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0033678Xrn110092.500ENSCSEG00000021285xrn19495.192Cynoglossus_semilaevis
MGP_SPRETEiJ_G0033678Xrn110092.500ENSCVAG00000013089xrn19971.869Cyprinodon_variegatus
MGP_SPRETEiJ_G0033678Xrn110092.500ENSDARG00000091652xrn19880.169Danio_rerio
MGP_SPRETEiJ_G0033678Xrn153100.000ENSDNOG00000034202-10098.058Dasypus_novemcinctus
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSDORG00000013833Xrn110085.260Dipodomys_ordii
MGP_SPRETEiJ_G0033678Xrn19568.421FBgn0020261pcm7639.646Drosophila_melanogaster
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSETEG00000003978XRN18896.774Echinops_telfairi
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSEASG00005002687XRN19994.929Equus_asinus_asinus
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSECAG00000008301XRN110085.083Equus_caballus
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSEEUG00000011323XRN19281.427Erinaceus_europaeus
MGP_SPRETEiJ_G0033678Xrn110092.500ENSELUG00000000169xrn110061.274Esox_lucius
MGP_SPRETEiJ_G0033678Xrn110097.500ENSFCAG00000027589XRN19994.286Felis_catus
MGP_SPRETEiJ_G0033678Xrn110095.000ENSFALG00000007021XRN110072.727Ficedula_albicollis
MGP_SPRETEiJ_G0033678Xrn110097.500ENSFDAG00000020494XRN19994.136Fukomys_damarensis
MGP_SPRETEiJ_G0033678Xrn15069.917ENSFHEG00000017356-9969.502Fundulus_heteroclitus
MGP_SPRETEiJ_G0033678Xrn153100.000ENSFHEG00000017255-10095.146Fundulus_heteroclitus
MGP_SPRETEiJ_G0033678Xrn110095.000ENSGMOG00000006396xrn18467.630Gadus_morhua
MGP_SPRETEiJ_G0033678Xrn110095.000ENSGALG00000002706XRN110072.819Gallus_gallus
MGP_SPRETEiJ_G0033678Xrn153100.000ENSGAFG00000006293-10094.175Gambusia_affinis
MGP_SPRETEiJ_G0033678Xrn110092.500ENSGACG00000014328xrn110060.412Gasterosteus_aculeatus
MGP_SPRETEiJ_G0033678Xrn110090.000ENSGAGG00000017535XRN19976.371Gopherus_agassizii
MGP_SPRETEiJ_G0033678Xrn110097.500ENSGGOG00000008047XRN110086.482Gorilla_gorilla
MGP_SPRETEiJ_G0033678Xrn110087.805ENSHBUG00000005908xrn19873.511Haplochromis_burtoni
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSHGLG00000014476XRN110094.421Heterocephalus_glaber_female
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSHGLG00100015130XRN110094.421Heterocephalus_glaber_male
MGP_SPRETEiJ_G0033678Xrn110090.000ENSHCOG00000014062xrn19969.782Hippocampus_comes
MGP_SPRETEiJ_G0033678Xrn16087.500ENSHCOG00000013992-9096.117Hippocampus_comes
MGP_SPRETEiJ_G0033678Xrn110092.500ENSIPUG00000015229xrn19962.378Ictalurus_punctatus
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSSTOG00000013552XRN19995.880Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSJJAG00000010863Xrn19993.955Jaculus_jaculus
MGP_SPRETEiJ_G0033678Xrn110090.000ENSKMAG00000021356xrn19475.738Kryptolebias_marmoratus
MGP_SPRETEiJ_G0033678Xrn110095.000ENSLBEG00000018656xrn19796.117Labrus_bergylta
MGP_SPRETEiJ_G0033678Xrn110097.500ENSLACG00000009020XRN110068.433Latimeria_chalumnae
MGP_SPRETEiJ_G0033678Xrn110095.000ENSLOCG00000007944xrn110063.931Lepisosteus_oculatus
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSLAFG00000015426XRN110093.826Loxodonta_africana
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSMFAG00000032599XRN110086.944Macaca_fascicularis
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSMMUG00000014038XRN110086.944Macaca_mulatta
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSMNEG00000034217XRN110086.771Macaca_nemestrina
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSMLEG00000041349-9995.595Mandrillus_leucophaeus
MGP_SPRETEiJ_G0033678Xrn110090.000ENSMAMG00000013219xrn19477.113Mastacembelus_armatus
MGP_SPRETEiJ_G0033678Xrn110090.000ENSMZEG00005015099xrn19959.922Maylandia_zebra
MGP_SPRETEiJ_G0033678Xrn110095.000ENSMGAG00000006333XRN110072.500Meleagris_gallopavo
MGP_SPRETEiJ_G0033678Xrn153100.000ENSMAUG00000014268-97100.000Mesocricetus_auratus
MGP_SPRETEiJ_G0033678Xrn110097.500ENSMICG00000048948XRN196100.000Microcebus_murinus
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSMOCG00000008665Xrn19996.989Microtus_ochrogaster
MGP_SPRETEiJ_G0033678Xrn15385.714ENSMMOG00000020896-9668.199Mola_mola
MGP_SPRETEiJ_G0033678Xrn110092.500ENSMODG00000021236XRN110077.015Monodelphis_domestica
MGP_SPRETEiJ_G0033678Xrn110090.000ENSMALG00000004098xrn110057.241Monopterus_albus
MGP_SPRETEiJ_G0033678Xrn1100100.000MGP_CAROLIEiJ_G0032535Xrn1100100.000Mus_caroli
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSMUSG00000032410Xrn1100100.000Mus_musculus
MGP_SPRETEiJ_G0033678Xrn1100100.000MGP_PahariEiJ_G0015404Xrn1100100.000Mus_pahari
MGP_SPRETEiJ_G0033678Xrn110097.500ENSMPUG00000012040XRN110086.067Mustela_putorius_furo
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSMLUG00000016885XRN110086.045Myotis_lucifugus
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSNGAG00000023964Xrn110092.427Nannospalax_galili
MGP_SPRETEiJ_G0033678Xrn153100.000ENSNBRG00000001531-9995.146Neolamprologus_brichardi
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSNLEG00000004726XRN110086.655Nomascus_leucogenys
MGP_SPRETEiJ_G0033678Xrn17198.969ENSMEUG00000014473-7399.029Notamacropus_eugenii
MGP_SPRETEiJ_G0033678Xrn110097.500ENSOPRG00000007337-7883.040Ochotona_princeps
MGP_SPRETEiJ_G0033678Xrn153100.000ENSODEG00000008804-100100.000Octodon_degus
MGP_SPRETEiJ_G0033678Xrn110090.000ENSONIG00000016673xrn19963.919Oreochromis_niloticus
MGP_SPRETEiJ_G0033678Xrn18586.290ENSOANG00000006735XRN110074.469Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0033678Xrn110097.500ENSOCUG00000001861XRN110086.411Oryctolagus_cuniculus
MGP_SPRETEiJ_G0033678Xrn110092.500ENSORLG00000013005xrn110060.045Oryzias_latipes
MGP_SPRETEiJ_G0033678Xrn110092.500ENSORLG00020005559xrn110060.751Oryzias_latipes_hni
MGP_SPRETEiJ_G0033678Xrn110092.500ENSORLG00015022523xrn18972.151Oryzias_latipes_hsok
MGP_SPRETEiJ_G0033678Xrn110092.500ENSOMEG00000015397xrn110072.779Oryzias_melastigma
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSOGAG00000000170XRN110083.200Otolemur_garnettii
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSOARG00000006343XRN19987.241Ovis_aries
MGP_SPRETEiJ_G0033678Xrn110097.500ENSPPAG00000010180XRN110086.358Pan_paniscus
MGP_SPRETEiJ_G0033678Xrn110097.500ENSPPRG00000007125XRN110086.374Panthera_pardus
MGP_SPRETEiJ_G0033678Xrn110097.500ENSPTIG00000021081XRN110086.316Panthera_tigris_altaica
MGP_SPRETEiJ_G0033678Xrn110097.500ENSPTRG00000015482XRN110086.474Pan_troglodytes
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSPANG00000010638XRN110086.828Papio_anubis
MGP_SPRETEiJ_G0033678Xrn153100.000ENSPKIG00000011903-7996.117Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0033678Xrn110095.000ENSPSIG00000018050XRN110074.743Pelodiscus_sinensis
MGP_SPRETEiJ_G0033678Xrn110095.000ENSPMGG00000002648xrn19878.022Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSPEMG00000020610Xrn19997.464Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0033678Xrn110097.500ENSPMAG00000002975xrn19178.161Petromyzon_marinus
MGP_SPRETEiJ_G0033678Xrn110092.500ENSPCIG00000028735XRN19988.273Phascolarctos_cinereus
MGP_SPRETEiJ_G0033678Xrn110090.000ENSPFOG00000013932xrn19763.421Poecilia_formosa
MGP_SPRETEiJ_G0033678Xrn110090.000ENSPLAG00000021653xrn19763.458Poecilia_latipinna
MGP_SPRETEiJ_G0033678Xrn110090.000ENSPMEG00000003076xrn19563.474Poecilia_mexicana
MGP_SPRETEiJ_G0033678Xrn110090.000ENSPREG00000021147xrn110060.604Poecilia_reticulata
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSPPYG00000014172XRN110085.780Pongo_abelii
MGP_SPRETEiJ_G0033678Xrn110095.000ENSPCAG00000005638XRN19679.340Procavia_capensis
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSPCOG00000013089XRN19995.246Propithecus_coquereli
MGP_SPRETEiJ_G0033678Xrn110097.500ENSPVAG00000016265XRN19689.948Pteropus_vampyrus
MGP_SPRETEiJ_G0033678Xrn110090.000ENSPNYG00000010570xrn19871.168Pundamilia_nyererei
MGP_SPRETEiJ_G0033678Xrn110095.000ENSPNAG00000023531xrn19960.970Pygocentrus_nattereri
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSRNOG00000042951Xrn110093.978Rattus_norvegicus
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSRBIG00000041227XRN110086.251Rhinopithecus_bieti
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSRROG00000033764-100100.000Rhinopithecus_roxellana
MGP_SPRETEiJ_G0033678Xrn110070.000YGL173CXRN18134.014Saccharomyces_cerevisiae
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSSBOG00000029561XRN110086.424Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0033678Xrn110092.500ENSSHAG00000016207XRN110077.862Sarcophilus_harrisii
MGP_SPRETEiJ_G0033678Xrn110092.500ENSSFOG00015024211xrn110061.552Scleropages_formosus
MGP_SPRETEiJ_G0033678Xrn110095.000ENSSMAG00000016534xrn19972.132Scophthalmus_maximus
MGP_SPRETEiJ_G0033678Xrn110092.500ENSSDUG00000010306xrn19772.150Seriola_dumerili
MGP_SPRETEiJ_G0033678Xrn110092.500ENSSLDG00000021543xrn19971.474Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0033678Xrn110097.500ENSSARG00000007741-8182.955Sorex_araneus
MGP_SPRETEiJ_G0033678Xrn153100.000ENSSPUG00000010754-10096.117Sphenodon_punctatus
MGP_SPRETEiJ_G0033678Xrn18860.526ENSSPAG00000009856-9676.970Stegastes_partitus
MGP_SPRETEiJ_G0033678Xrn110097.500ENSTGUG00000008498XRN110074.207Taeniopygia_guttata
MGP_SPRETEiJ_G0033678Xrn110090.000ENSTRUG00000004895xrn19775.579Takifugu_rubripes
MGP_SPRETEiJ_G0033678Xrn110087.805ENSTNIG00000017615xrn19767.837Tetraodon_nigroviridis
MGP_SPRETEiJ_G0033678Xrn110097.500ENSTBEG00000003256XRN18985.965Tupaia_belangeri
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSTTRG00000012914XRN110081.698Tursiops_truncatus
MGP_SPRETEiJ_G0033678Xrn110097.500ENSUAMG00000001608XRN19991.727Ursus_americanus
MGP_SPRETEiJ_G0033678Xrn110097.500ENSUMAG00000013625XRN110088.915Ursus_maritimus
MGP_SPRETEiJ_G0033678Xrn1100100.000ENSVPAG00000004690XRN110082.798Vicugna_pacos
MGP_SPRETEiJ_G0033678Xrn110097.500ENSVVUG00000024461XRN19995.246Vulpes_vulpes
MGP_SPRETEiJ_G0033678Xrn110095.000ENSXETG00000000619xrn19988.542Xenopus_tropicalis
MGP_SPRETEiJ_G0033678Xrn110090.000ENSXCOG00000007917xrn19771.650Xiphophorus_couchianus
MGP_SPRETEiJ_G0033678Xrn110090.000ENSXMAG00000018320xrn19871.895Xiphophorus_maculatus

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