EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
MGP_SPRETEiJ_G0034192 (Gene tree)
Gene ID
-
Gene Symbol
Smarca1
Alias
5730494M04Rik|Snf2l
Full Name
SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type
protein_coding
Species
Mus_spretus
Status
putative
Strand
Minus strand
Length
74665 bases
Position
chrX:31597425-31672089
Accession
1935127
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
MGP_SPRETEiJ_P0095096ResIIIPF04851.154.4e-1211
MGP_SPRETEiJ_P0095095ResIIIPF04851.151.1e-1111
MGP_SPRETEiJ_P0095092ResIIIPF04851.151.8e-1111
MGP_SPRETEiJ_P0095091ResIIIPF04851.151.9e-1111
MGP_SPRETEiJ_P0095093ResIIIPF04851.151.9e-1111
MGP_SPRETEiJ_P0095091DEADPF00270.291.3e-0611
MGP_SPRETEiJ_P0095093DEADPF00270.291.3e-0611
MGP_SPRETEiJ_P0095092DEADPF00270.291.3e-0611
MGP_SPRETEiJ_P0095096DEADPF00270.292.4e-0611
MGP_SPRETEiJ_P0095095DEADPF00270.293.3e-0611
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
MGP_SPRETEiJ_T0095091-4024-MGP_SPRETEiJ_P00950911046 (aa)--
MGP_SPRETEiJ_T0095092-3991-MGP_SPRETEiJ_P00950921062 (aa)--
MGP_SPRETEiJ_T0095093-4798-MGP_SPRETEiJ_P00950931046 (aa)--
MGP_SPRETEiJ_T0095094-975-MGP_SPRETEiJ_P0095094238 (aa)--
MGP_SPRETEiJ_T0095095-2304-MGP_SPRETEiJ_P0095095768 (aa)--
MGP_SPRETEiJ_T0095096-1960-MGP_SPRETEiJ_P0095096381 (aa)--
MGP_SPRETEiJ_T0095097-360-MGP_SPRETEiJ_P0095097117 (aa)--
MGP_SPRETEiJ_T0095098-400--- (aa)--
Gene Model
Click here to download MGP_SPRETEiJ_G0034192's gene model file
Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0034192's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
MGP_SPRETEiJ_G0034192Smarca17244.867MGP_SPRETEiJ_G0023848Hells6547.012
MGP_SPRETEiJ_G0034192Smarca17542.470MGP_SPRETEiJ_G0026347Chd1l6243.380
MGP_SPRETEiJ_G0034192Smarca16132.031MGP_SPRETEiJ_G0027297Rad54l6633.267
MGP_SPRETEiJ_G0034192Smarca17130.174MGP_SPRETEiJ_G0019515-9341.818
MGP_SPRETEiJ_G0034192Smarca16831.488MGP_SPRETEiJ_G0026758Rad54b6132.155
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
MGP_SPRETEiJ_G0034192Smarca110095.955ENSG00000102038SMARCA110095.955Homo_sapiens
MGP_SPRETEiJ_G0034192Smarca19282.263ENSAPOG00000016035smarca59883.370Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0034192Smarca110093.860ENSAMEG00000015218SMARCA110094.047Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0034192Smarca18583.278ENSACIG00000016982smarca59983.371Amphilophus_citrinellus
MGP_SPRETEiJ_G0034192Smarca19282.263ENSAOCG00000015578smarca59581.307Amphiprion_ocellaris
MGP_SPRETEiJ_G0034192Smarca19282.263ENSAPEG00000011117smarca59983.373Amphiprion_percula
MGP_SPRETEiJ_G0034192Smarca19680.060ENSATEG00000012894smarca59780.495Anabas_testudineus
MGP_SPRETEiJ_G0034192Smarca19391.084ENSAPLG00000013149SMARCA110091.084Anas_platyrhynchos
MGP_SPRETEiJ_G0034192Smarca19788.933ENSACAG00000011376SMARCA19590.258Anolis_carolinensis
MGP_SPRETEiJ_G0034192Smarca19891.083ENSANAG00000023098SMARCA110090.875Aotus_nancymaae
MGP_SPRETEiJ_G0034192Smarca19680.078ENSACLG00000025356smarca59581.946Astatotilapia_calliptera
MGP_SPRETEiJ_G0034192Smarca19779.651ENSAMXG00000005709smarca59482.653Astyanax_mexicanus
MGP_SPRETEiJ_G0034192Smarca18788.344ENSAMXG00000011227smarca19989.576Astyanax_mexicanus
MGP_SPRETEiJ_G0034192Smarca110094.171ENSBTAG00000002292SMARCA110093.750Bos_taurus
MGP_SPRETEiJ_G0034192Smarca19163.023WBGene00002169isw-19663.023Caenorhabditis_elegans
MGP_SPRETEiJ_G0034192Smarca110095.767ENSCJAG00000002868SMARCA110095.767Callithrix_jacchus
MGP_SPRETEiJ_G0034192Smarca19693.989ENSCAFG00000018673SMARCA19987.779Canis_familiaris
MGP_SPRETEiJ_G0034192Smarca110095.673ENSCAFG00020001751SMARCA110095.861Canis_lupus_dingo
MGP_SPRETEiJ_G0034192Smarca110094.934ENSCHIG00000009837SMARCA110095.028Capra_hircus
MGP_SPRETEiJ_G0034192Smarca19596.667ENSTSYG00000004240SMARCA19996.667Carlito_syrichta
MGP_SPRETEiJ_G0034192Smarca110094.267ENSCPOG00000013601SMARCA110094.267Cavia_porcellus
MGP_SPRETEiJ_G0034192Smarca19893.001ENSCCAG00000030817SMARCA110092.756Cebus_capucinus
MGP_SPRETEiJ_G0034192Smarca110095.989ENSCATG00000015921SMARCA110095.989Cercocebus_atys
MGP_SPRETEiJ_G0034192Smarca19894.823ENSCLAG00000002171SMARCA110094.638Chinchilla_lanigera
MGP_SPRETEiJ_G0034192Smarca110095.955ENSCSAG00000008460SMARCA110095.955Chlorocebus_sabaeus
MGP_SPRETEiJ_G0034192Smarca19789.255ENSCPBG00000001146SMARCA19591.054Chrysemys_picta_bellii
MGP_SPRETEiJ_G0034192Smarca19371.615ENSCING00000004110swi/snf9871.615Ciona_intestinalis
MGP_SPRETEiJ_G0034192Smarca19272.008ENSCSAVG00000004620-10073.497Ciona_savignyi
MGP_SPRETEiJ_G0034192Smarca110095.861ENSCANG00000007183SMARCA110095.861Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0034192Smarca110096.617ENSCGRG00001010776Smarca110096.617Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0034192Smarca19597.273ENSCGRG00000015301Smarca19997.273Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0034192Smarca19282.917ENSCSEG00000000328smarca59581.508Cynoglossus_semilaevis
MGP_SPRETEiJ_G0034192Smarca19381.864ENSCVAG00000008668smarca59982.921Cyprinodon_variegatus
MGP_SPRETEiJ_G0034192Smarca19484.479ENSDARG00000012776smarca19884.479Danio_rerio
MGP_SPRETEiJ_G0034192Smarca19481.288ENSDARG00000052348smarca59581.288Danio_rerio
MGP_SPRETEiJ_G0034192Smarca19993.756ENSDNOG00000004315SMARCA110093.756Dasypus_novemcinctus
MGP_SPRETEiJ_G0034192Smarca110095.124ENSDORG00000009270Smarca110095.124Dipodomys_ordii
MGP_SPRETEiJ_G0034192Smarca19471.702FBgn0011604Iswi9871.373Drosophila_melanogaster
MGP_SPRETEiJ_G0034192Smarca17893.750ENSETEG00000017426SMARCA18693.750Echinops_telfairi
MGP_SPRETEiJ_G0034192Smarca19379.776ENSEBUG00000001239smarca59679.776Eptatretus_burgeri
MGP_SPRETEiJ_G0034192Smarca19295.063ENSEASG00005008218SMARCA110091.960Equus_asinus_asinus
MGP_SPRETEiJ_G0034192Smarca110095.216ENSECAG00000012106SMARCA110095.310Equus_caballus
MGP_SPRETEiJ_G0034192Smarca17797.682ENSEEUG00000014927SMARCA18397.682Erinaceus_europaeus
MGP_SPRETEiJ_G0034192Smarca19684.917ENSELUG00000010515smarca19886.041Esox_lucius
MGP_SPRETEiJ_G0034192Smarca110096.045ENSFCAG00000018496SMARCA110096.045Felis_catus
MGP_SPRETEiJ_G0034192Smarca18990.483ENSFALG00000000209SMARCA19891.886Ficedula_albicollis
MGP_SPRETEiJ_G0034192Smarca19595.115ENSFDAG00000009818SMARCA19895.115Fukomys_damarensis
MGP_SPRETEiJ_G0034192Smarca19382.270ENSFHEG00000007687smarca59184.912Fundulus_heteroclitus
MGP_SPRETEiJ_G0034192Smarca19489.357ENSGALG00000008431SMARCA19790.835Gallus_gallus
MGP_SPRETEiJ_G0034192Smarca19382.067ENSGAFG00000017731smarca59581.508Gambusia_affinis
MGP_SPRETEiJ_G0034192Smarca19292.078ENSGAGG00000023575SMARCA110092.078Gopherus_agassizii
MGP_SPRETEiJ_G0034192Smarca19390.028ENSGGOG00000012841-9896.000Gorilla_gorilla
MGP_SPRETEiJ_G0034192Smarca110094.262ENSHGLG00000003080SMARCA110094.450Heterocephalus_glaber_female
MGP_SPRETEiJ_G0034192Smarca19495.504ENSHGLG00100001102SMARCA110095.504Heterocephalus_glaber_male
MGP_SPRETEiJ_G0034192Smarca19282.299ENSHCOG00000005458smarca59780.594Hippocampus_comes
MGP_SPRETEiJ_G0034192Smarca19684.412ENSIPUG00000016905Smarca19985.873Ictalurus_punctatus
MGP_SPRETEiJ_G0034192Smarca19878.902ENSIPUG00000005229SMARCA59781.534Ictalurus_punctatus
MGP_SPRETEiJ_G0034192Smarca110095.484ENSSTOG00000014524SMARCA110095.484Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0034192Smarca110096.045ENSJJAG00000002593Smarca110096.045Jaculus_jaculus
MGP_SPRETEiJ_G0034192Smarca19282.503ENSKMAG00000003777smarca59581.809Kryptolebias_marmoratus
MGP_SPRETEiJ_G0034192Smarca19481.407ENSLBEG00000018112smarca59581.407Labrus_bergylta
MGP_SPRETEiJ_G0034192Smarca18982.479ENSLBEG00000013295SMARCA110084.197Labrus_bergylta
MGP_SPRETEiJ_G0034192Smarca19687.882ENSLACG00000016697SMARCA19988.404Latimeria_chalumnae
MGP_SPRETEiJ_G0034192Smarca19487.625ENSLOCG00000014591smarca19787.625Lepisosteus_oculatus
MGP_SPRETEiJ_G0034192Smarca19595.924ENSLAFG00000000896SMARCA110095.924Loxodonta_africana
MGP_SPRETEiJ_G0034192Smarca110095.989ENSMFAG00000002117SMARCA110095.989Macaca_fascicularis
MGP_SPRETEiJ_G0034192Smarca110095.989ENSMMUG00000008818SMARCA110095.989Macaca_mulatta
MGP_SPRETEiJ_G0034192Smarca110095.989ENSMNEG00000041768SMARCA110095.989Macaca_nemestrina
MGP_SPRETEiJ_G0034192Smarca110095.861ENSMLEG00000043198SMARCA110095.861Mandrillus_leucophaeus
MGP_SPRETEiJ_G0034192Smarca19382.270ENSMAMG00000014294smarca59581.709Mastacembelus_armatus
MGP_SPRETEiJ_G0034192Smarca19680.078ENSMZEG00005009369smarca59581.946Maylandia_zebra
MGP_SPRETEiJ_G0034192Smarca19589.118ENSMGAG00000007042SMARCA110089.118Meleagris_gallopavo
MGP_SPRETEiJ_G0034192Smarca110097.899ENSMAUG00000008133Smarca110097.899Mesocricetus_auratus
MGP_SPRETEiJ_G0034192Smarca19895.777ENSMICG00000015768SMARCA110095.292Microcebus_murinus
MGP_SPRETEiJ_G0034192Smarca110097.272ENSMOCG00000009464Smarca110097.272Microtus_ochrogaster
MGP_SPRETEiJ_G0034192Smarca19479.698ENSMMOG00000005547smarca59979.698Mola_mola
MGP_SPRETEiJ_G0034192Smarca19888.428ENSMODG00000013187-9988.428Monodelphis_domestica
MGP_SPRETEiJ_G0034192Smarca19281.892ENSMALG00000002081smarca59781.372Monopterus_albus
MGP_SPRETEiJ_G0034192Smarca110099.812MGP_CAROLIEiJ_G0033034Smarca110099.812Mus_caroli
MGP_SPRETEiJ_G0034192Smarca110099.870ENSMUSG00000031099Smarca110099.870Mus_musculus
MGP_SPRETEiJ_G0034192Smarca110099.522MGP_PahariEiJ_G0031579Smarca110099.522Mus_pahari
MGP_SPRETEiJ_G0034192Smarca110095.449ENSMPUG00000017423SMARCA19594.698Mustela_putorius_furo
MGP_SPRETEiJ_G0034192Smarca19893.609ENSMLUG00000029614SMARCA110092.565Myotis_lucifugus
MGP_SPRETEiJ_G0034192Smarca110097.230ENSNGAG00000006492Smarca110097.230Nannospalax_galili
MGP_SPRETEiJ_G0034192Smarca19382.472ENSNBRG00000004463smarca59982.046Neolamprologus_brichardi
MGP_SPRETEiJ_G0034192Smarca19894.408ENSNLEG00000015179SMARCA19996.259Nomascus_leucogenys
MGP_SPRETEiJ_G0034192Smarca19283.451ENSMEUG00000008819SMARCA19981.007Notamacropus_eugenii
MGP_SPRETEiJ_G0034192Smarca19893.931ENSODEG00000012163SMARCA110093.573Octodon_degus
MGP_SPRETEiJ_G0034192Smarca19680.176ENSONIG00000009993smarca59582.046Oreochromis_niloticus
MGP_SPRETEiJ_G0034192Smarca19292.387ENSOANG00000002862SMARCA110092.387Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0034192Smarca110093.597ENSOCUG00000001047SMARCA110093.597Oryctolagus_cuniculus
MGP_SPRETEiJ_G0034192Smarca19282.197ENSORLG00000021998smarca59680.495Oryzias_latipes
MGP_SPRETEiJ_G0034192Smarca19282.299ENSORLG00020017679smarca59780.594Oryzias_latipes_hni
MGP_SPRETEiJ_G0034192Smarca19282.197ENSORLG00015017210smarca59780.396Oryzias_latipes_hsok
MGP_SPRETEiJ_G0034192Smarca19282.197ENSOMEG00000000086smarca59780.396Oryzias_melastigma
MGP_SPRETEiJ_G0034192Smarca110094.928ENSOGAG00000004399SMARCA110094.334Otolemur_garnettii
MGP_SPRETEiJ_G0034192Smarca19595.383ENSOARG00000014638SMARCA110096.853Ovis_aries
MGP_SPRETEiJ_G0034192Smarca110095.955ENSPPAG00000034647SMARCA110095.955Pan_paniscus
MGP_SPRETEiJ_G0034192Smarca110096.045ENSPPRG00000008929SMARCA110096.045Panthera_pardus
MGP_SPRETEiJ_G0034192Smarca19594.618ENSPTIG00000000915SMARCA19894.618Panthera_tigris_altaica
MGP_SPRETEiJ_G0034192Smarca110095.989ENSPTRG00000049876SMARCA110095.989Pan_troglodytes
MGP_SPRETEiJ_G0034192Smarca110095.955ENSPANG00000003871SMARCA110095.955Papio_anubis
MGP_SPRETEiJ_G0034192Smarca19187.198ENSPKIG00000013411smarca19687.447Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0034192Smarca19589.784ENSPSIG00000010101SMARCA110091.770Pelodiscus_sinensis
MGP_SPRETEiJ_G0034192Smarca110098.663ENSPEMG00000017503Smarca110098.663Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0034192Smarca19789.086ENSPCIG00000015460SMARCA19890.755Phascolarctos_cinereus
MGP_SPRETEiJ_G0034192Smarca19282.299ENSPFOG00000007649smarca59581.508Poecilia_formosa
MGP_SPRETEiJ_G0034192Smarca19282.299ENSPLAG00000003363smarca59581.508Poecilia_latipinna
MGP_SPRETEiJ_G0034192Smarca19282.197ENSPMEG00000019849smarca59581.407Poecilia_mexicana
MGP_SPRETEiJ_G0034192Smarca19282.197ENSPREG00000023250smarca59581.407Poecilia_reticulata
MGP_SPRETEiJ_G0034192Smarca19893.480ENSPPYG00000020703SMARCA110093.227Pongo_abelii
MGP_SPRETEiJ_G0034192Smarca18990.247ENSPCOG00000020722SMARCA19491.605Propithecus_coquereli
MGP_SPRETEiJ_G0034192Smarca19294.133ENSPVAG00000003805SMARCA19494.208Pteropus_vampyrus
MGP_SPRETEiJ_G0034192Smarca17583.288ENSPNYG00000012299smarca59281.166Pundamilia_nyererei
MGP_SPRETEiJ_G0034192Smarca110098.305ENSRNOG00000003762Smarca110098.305Rattus_norvegicus
MGP_SPRETEiJ_G0034192Smarca110095.861ENSRROG00000034167SMARCA110095.861Rhinopithecus_roxellana
MGP_SPRETEiJ_G0034192Smarca19694.220ENSSBOG00000020641SMARCA110097.157Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0034192Smarca19285.509ENSSHAG00000013518SMARCA19985.509Sarcophilus_harrisii
MGP_SPRETEiJ_G0034192Smarca19685.280ENSSFOG00015009043smarca19886.355Scleropages_formosus
MGP_SPRETEiJ_G0034192Smarca19481.244ENSSFOG00015016794smarca510082.577Scleropages_formosus
MGP_SPRETEiJ_G0034192Smarca19381.351ENSSMAG00000004801smarca59581.351Scophthalmus_maximus
MGP_SPRETEiJ_G0034192Smarca19381.966ENSSDUG00000020690smarca59681.407Seriola_dumerili
MGP_SPRETEiJ_G0034192Smarca19381.966ENSSLDG00000025190smarca59681.407Seriola_lalandi_dorsalis
MGP_SPRETEiJ_G0034192Smarca18395.880ENSSARG00000000842SMARCA18797.518Sorex_araneus
MGP_SPRETEiJ_G0034192Smarca19589.899ENSSPUG00000000590SMARCA19590.234Sphenodon_punctatus
MGP_SPRETEiJ_G0034192Smarca19381.864ENSSPAG00000002894smarca59783.370Stegastes_partitus
MGP_SPRETEiJ_G0034192Smarca19994.923ENSSSCG00000012649SMARCA110094.923Sus_scrofa
MGP_SPRETEiJ_G0034192Smarca19390.679ENSTGUG00000003899-10090.679Taeniopygia_guttata
MGP_SPRETEiJ_G0034192Smarca19382.371ENSTRUG00000014094smarca59581.809Takifugu_rubripes
MGP_SPRETEiJ_G0034192Smarca19281.957ENSTNIG00000017717smarca59481.106Tetraodon_nigroviridis
MGP_SPRETEiJ_G0034192Smarca18694.841ENSTBEG00000014973SMARCA19194.841Tupaia_belangeri
MGP_SPRETEiJ_G0034192Smarca19492.563ENSTTRG00000006168SMARCA110092.563Tursiops_truncatus
MGP_SPRETEiJ_G0034192Smarca110095.108ENSUAMG00000020201SMARCA110095.296Ursus_americanus
MGP_SPRETEiJ_G0034192Smarca19989.255ENSUMAG00000004073SMARCA19996.897Ursus_maritimus
MGP_SPRETEiJ_G0034192Smarca17498.413ENSVPAG00000010492-8098.413Vicugna_pacos
MGP_SPRETEiJ_G0034192Smarca19596.716ENSVVUG00000008878SMARCA110096.885Vulpes_vulpes
MGP_SPRETEiJ_G0034192Smarca19487.413ENSXETG00000001526smarca19987.413Xenopus_tropicalis
MGP_SPRETEiJ_G0034192Smarca19381.966ENSXCOG00000011170smarca59881.407Xiphophorus_couchianus
MGP_SPRETEiJ_G0034192Smarca19381.966ENSXMAG00000009678smarca59883.442Xiphophorus_maculatus

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