EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0034256 (Gene tree)
Gene ID: -
Gene Symbol: Zic3
Alias: Ka
Full Name: zinc finger protein of the cerebellum 3
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 72307 bases
Position: chrX:40519554-40591860
Accession: 106676
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0095282	zf-C2H2	PF00096.26	8.6e-23	1	4
MGP_SPRETEiJ_P0095282	zf-C2H2	PF00096.26	8.6e-23	2	4
MGP_SPRETEiJ_P0095282	zf-C2H2	PF00096.26	8.6e-23	3	4
MGP_SPRETEiJ_P0095282	zf-C2H2	PF00096.26	8.6e-23	4	4
MGP_SPRETEiJ_P0095281	zf-C2H2	PF00096.26	3.4e-21	1	4
MGP_SPRETEiJ_P0095281	zf-C2H2	PF00096.26	3.4e-21	2	4
MGP_SPRETEiJ_P0095281	zf-C2H2	PF00096.26	3.4e-21	3	4
MGP_SPRETEiJ_P0095281	zf-C2H2	PF00096.26	3.4e-21	4	4
MGP_SPRETEiJ_P0095283	zf-C2H2	PF00096.26	2.1e-20	1	4
MGP_SPRETEiJ_P0095283	zf-C2H2	PF00096.26	2.1e-20	2	4
MGP_SPRETEiJ_P0095283	zf-C2H2	PF00096.26	2.1e-20	3	4
MGP_SPRETEiJ_P0095283	zf-C2H2	PF00096.26	2.1e-20	4	4
MGP_SPRETEiJ_P0095282	zf-met	PF12874.7	8e-05	1	1
MGP_SPRETEiJ_P0095283	zf-met	PF12874.7	0.00078	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0095284	-	838	-	MGP_SPRETEiJ_P0095284	255 (aa)	-	-
MGP_SPRETEiJ_T0095281	-	3944	-	MGP_SPRETEiJ_P0095281	466 (aa)	-	UPI0000020E98
MGP_SPRETEiJ_T0095280	-	566	-	MGP_SPRETEiJ_P0095280	89 (aa)	-	UPI0000EE06D3
MGP_SPRETEiJ_T0095283	-	1947	-	MGP_SPRETEiJ_P0095283	456 (aa)	-	UPI000024F3D8
MGP_SPRETEiJ_T0095282	-	2975	-	MGP_SPRETEiJ_P0095282	246 (aa)	-	UPI0000DBEDF5

Gene Model

Click here to download MGP_SPRETEiJ_G0034256's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0034256's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0034256	Zic3	64	33.540	MGP_SPRETEiJ_G0025644	Zfp64	56	33.540
MGP_SPRETEiJ_G0034256	Zic3	64	38.849	MGP_SPRETEiJ_G0021379	Snai2	50	38.776

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0034256	Zic3	100	99.593	ENSG00000156925	ZIC3	100	98.287	Homo_sapiens
MGP_SPRETEiJ_G0034256	Zic3	100	99.593	ENSANAG00000019614	ZIC3	100	98.073	Aotus_nancymaae
MGP_SPRETEiJ_G0034256	Zic3	100	99.593	ENSCJAG00000013792	ZIC3	100	97.645	Callithrix_jacchus
MGP_SPRETEiJ_G0034256	Zic3	100	99.593	ENSCAFG00000018979	ZIC3	100	97.645	Canis_familiaris
MGP_SPRETEiJ_G0034256	Zic3	100	99.593	ENSTSYG00000003356	ZIC3	100	95.075	Carlito_syrichta
MGP_SPRETEiJ_G0034256	Zic3	100	98.374	ENSCPOG00000002374	ZIC3	100	98.374	Cavia_porcellus
MGP_SPRETEiJ_G0034256	Zic3	100	99.593	ENSCCAG00000025983	ZIC3	100	97.859	Cebus_capucinus
MGP_SPRETEiJ_G0034256	Zic3	100	99.593	ENSCATG00000036569	ZIC3	100	97.859	Cercocebus_atys
MGP_SPRETEiJ_G0034256	Zic3	100	99.593	ENSCLAG00000001934	ZIC3	100	98.498	Chinchilla_lanigera
MGP_SPRETEiJ_G0034256	Zic3	97	94.191	ENSCPBG00000026115	ZIC3	100	86.468	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0034256	Zic3	100	99.593	ENSCANG00000017505	ZIC3	100	97.645	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0034256	Zic3	100	100.000	ENSCGRG00001024527	Zic3	100	99.571	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0034256	Zic3	100	99.187	ENSDORG00000025481	Zic3	100	97.854	Dipodomys_ordii
MGP_SPRETEiJ_G0034256	Zic3	100	99.593	ENSFCAG00000025684	ZIC3	100	97.645	Felis_catus
MGP_SPRETEiJ_G0034256	Zic3	100	99.187	ENSFDAG00000014929	ZIC3	100	99.187	Fukomys_damarensis
MGP_SPRETEiJ_G0034256	Zic3	95	79.866	ENSGAGG00000004149	ZIC3	92	79.866	Gopherus_agassizii
MGP_SPRETEiJ_G0034256	Zic3	100	99.593	ENSGGOG00000011914	ZIC3	100	98.287	Gorilla_gorilla
MGP_SPRETEiJ_G0034256	Zic3	100	99.187	ENSHGLG00000006298	ZIC3	100	98.069	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0034256	Zic3	100	60.569	ENSHGLG00100002829	ZIC3	100	77.070	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0034256	Zic3	100	99.593	ENSJJAG00000022714	Zic3	100	99.142	Jaculus_jaculus
MGP_SPRETEiJ_G0034256	Zic3	100	91.093	ENSLACG00000014597	ZIC3	100	76.445	Latimeria_chalumnae
MGP_SPRETEiJ_G0034256	Zic3	100	97.967	ENSLAFG00000007048	ZIC3	100	92.462	Loxodonta_africana
MGP_SPRETEiJ_G0034256	Zic3	100	99.593	ENSMFAG00000027018	ZIC3	100	97.859	Macaca_fascicularis
MGP_SPRETEiJ_G0034256	Zic3	100	97.155	ENSMMUG00000002023	ZIC3	100	97.155	Macaca_mulatta
MGP_SPRETEiJ_G0034256	Zic3	100	99.593	ENSMNEG00000040682	ZIC3	100	97.859	Macaca_nemestrina
MGP_SPRETEiJ_G0034256	Zic3	100	99.593	ENSMLEG00000004378	ZIC3	100	97.859	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0034256	Zic3	100	100.000	ENSMAUG00000009402	Zic3	100	99.785	Mesocricetus_auratus
MGP_SPRETEiJ_G0034256	Zic3	100	99.593	ENSMICG00000042529	ZIC3	100	98.073	Microcebus_murinus
MGP_SPRETEiJ_G0034256	Zic3	100	100.000	ENSMOCG00000020544	Zic3	100	99.356	Microtus_ochrogaster
MGP_SPRETEiJ_G0034256	Zic3	100	100.000	MGP_CAROLIEiJ_G0033101	Zic3	100	100.000	Mus_caroli
MGP_SPRETEiJ_G0034256	Zic3	100	100.000	ENSMUSG00000067860	Zic3	100	100.000	Mus_musculus
MGP_SPRETEiJ_G0034256	Zic3	100	100.000	MGP_PahariEiJ_G0031644	Zic3	100	100.000	Mus_pahari
MGP_SPRETEiJ_G0034256	Zic3	100	99.593	ENSNGAG00000023346	Zic3	100	98.712	Nannospalax_galili
MGP_SPRETEiJ_G0034256	Zic3	100	99.187	ENSNLEG00000003005	-	100	98.221	Nomascus_leucogenys
MGP_SPRETEiJ_G0034256	Zic3	100	99.593	ENSODEG00000005556	ZIC3	100	98.283	Octodon_degus
MGP_SPRETEiJ_G0034256	Zic3	100	99.593	ENSPPAG00000030013	ZIC3	100	98.287	Pan_paniscus
MGP_SPRETEiJ_G0034256	Zic3	100	99.187	ENSPPRG00000010839	ZIC3	100	97.645	Panthera_pardus
MGP_SPRETEiJ_G0034256	Zic3	100	99.593	ENSPTRG00000043849	ZIC3	100	98.287	Pan_troglodytes
MGP_SPRETEiJ_G0034256	Zic3	100	99.593	ENSPANG00000011357	ZIC3	100	97.859	Papio_anubis
MGP_SPRETEiJ_G0034256	Zic3	100	86.640	ENSPKIG00000017705	zic3	100	73.291	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0034256	Zic3	100	93.574	ENSPSIG00000011896	ZIC3	99	90.753	Pelodiscus_sinensis
MGP_SPRETEiJ_G0034256	Zic3	100	100.000	ENSPEMG00000022168	Zic3	100	99.785	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0034256	Zic3	100	99.187	ENSPCOG00000021557	ZIC3	100	97.645	Propithecus_coquereli
MGP_SPRETEiJ_G0034256	Zic3	100	100.000	ENSRNOG00000000861	Zic3	100	99.571	Rattus_norvegicus
MGP_SPRETEiJ_G0034256	Zic3	100	99.593	ENSRBIG00000030660	ZIC3	100	97.645	Rhinopithecus_bieti
MGP_SPRETEiJ_G0034256	Zic3	100	99.593	ENSRROG00000028410	ZIC3	100	97.645	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0034256	Zic3	100	99.593	ENSSBOG00000024684	ZIC3	100	98.287	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0034256	Zic3	100	86.235	ENSSFOG00015008079	zic3	100	68.670	Scleropages_formosus
MGP_SPRETEiJ_G0034256	Zic3	100	85.425	ENSSFOG00015011731	zic3	100	74.464	Scleropages_formosus
MGP_SPRETEiJ_G0034256	Zic3	95	90.171	ENSTGUG00000002155	ZIC3	100	82.741	Taeniopygia_guttata
MGP_SPRETEiJ_G0034256	Zic3	100	99.593	ENSVVUG00000021378	ZIC3	100	97.645	Vulpes_vulpes
MGP_SPRETEiJ_G0034256	Zic3	99	87.045	ENSXETG00000024458	zic3	100	76.972	Xenopus_tropicalis