EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0034533 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc5
Alias: -
Full Name: poly(A) binding protein%2C cytoplasmic 5
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 2984 bases
Position: chrX:101566970-101569953
Accession: 2136401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0096351	RRM_5	PF13893.6	7.3e-12	1	2
MGP_SPRETEiJ_P0096351	RRM_5	PF13893.6	7.3e-12	2	2
MGP_SPRETEiJ_P0096352	RRM_5	PF13893.6	7.3e-12	1	2
MGP_SPRETEiJ_P0096352	RRM_5	PF13893.6	7.3e-12	2	2
MGP_SPRETEiJ_P0096351	RRM_1	PF00076.22	1.1e-77	1	4
MGP_SPRETEiJ_P0096351	RRM_1	PF00076.22	1.1e-77	2	4
MGP_SPRETEiJ_P0096351	RRM_1	PF00076.22	1.1e-77	3	4
MGP_SPRETEiJ_P0096351	RRM_1	PF00076.22	1.1e-77	4	4
MGP_SPRETEiJ_P0096352	RRM_1	PF00076.22	1.1e-77	1	4
MGP_SPRETEiJ_P0096352	RRM_1	PF00076.22	1.1e-77	2	4
MGP_SPRETEiJ_P0096352	RRM_1	PF00076.22	1.1e-77	3	4
MGP_SPRETEiJ_P0096352	RRM_1	PF00076.22	1.1e-77	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0096352	-	2255	-	MGP_SPRETEiJ_P0096352	381 (aa)	-	UPI00000E9A1C
MGP_SPRETEiJ_T0096351	-	2446	-	MGP_SPRETEiJ_P0096351	381 (aa)	-	UPI00000E9A1C

Gene Model

Click here to download MGP_SPRETEiJ_G0034533's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0034533's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0034533	Pabpc5	70	35.955	MGP_SPRETEiJ_G0016461	Celf5	66	34.426
MGP_SPRETEiJ_G0034533	Pabpc5	96	60.833	MGP_SPRETEiJ_G0023126	Pabpc2	59	60.674
MGP_SPRETEiJ_G0034533	Pabpc5	96	57.418	MGP_SPRETEiJ_G0025903	Pabpc4l	97	57.303
MGP_SPRETEiJ_G0034533	Pabpc5	88	68.794	MGP_SPRETEiJ_G0027415	Pabpc4	100	68.794
MGP_SPRETEiJ_G0034533	Pabpc5	63	34.483	MGP_SPRETEiJ_G0033445	Celf6	51	34.483
MGP_SPRETEiJ_G0034533	Pabpc5	95	64.463	MGP_SPRETEiJ_G0020636	Pabpc1	58	64.607
MGP_SPRETEiJ_G0034533	Pabpc5	61	36.709	MGP_SPRETEiJ_G0026256	Celf3	61	30.526
MGP_SPRETEiJ_G0034533	Pabpc5	94	37.037	MGP_SPRETEiJ_G0027124	Elavl2	89	37.037
MGP_SPRETEiJ_G0034533	Pabpc5	96	56.944	MGP_SPRETEiJ_G0025549	Pabpc1l	64	57.022
MGP_SPRETEiJ_G0034533	Pabpc5	93	33.333	MGP_SPRETEiJ_G0029606	Tia1	84	34.247
MGP_SPRETEiJ_G0034533	Pabpc5	95	58.713	MGP_SPRETEiJ_G0021962	Pabpc6	59	58.743

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0034533	Pabpc5	99	95.515	ENSG00000174740	PABPC5	99	95.515	Homo_sapiens
MGP_SPRETEiJ_G0034533	Pabpc5	99	94.195	ENSAMEG00000020114	PABPC5	99	94.195	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0034533	Pabpc5	99	95.515	ENSANAG00000005063	PABPC5	99	95.515	Aotus_nancymaae
MGP_SPRETEiJ_G0034533	Pabpc5	99	93.421	ENSBTAG00000019942	PABPC5	99	93.421	Bos_taurus
MGP_SPRETEiJ_G0034533	Pabpc5	99	94.987	ENSCJAG00000003665	PABPC5	99	94.987	Callithrix_jacchus
MGP_SPRETEiJ_G0034533	Pabpc5	99	93.684	ENSCAFG00000017452	PABPC5	99	93.684	Canis_familiaris
MGP_SPRETEiJ_G0034533	Pabpc5	99	93.684	ENSCHIG00000019004	PABPC5	99	93.684	Capra_hircus
MGP_SPRETEiJ_G0034533	Pabpc5	99	94.737	ENSTSYG00000036351	PABPC5	99	94.737	Carlito_syrichta
MGP_SPRETEiJ_G0034533	Pabpc5	99	85.714	ENSCAPG00000010714	PABPC5	99	85.714	Cavia_aperea
MGP_SPRETEiJ_G0034533	Pabpc5	99	91.053	ENSCPOG00000002555	PABPC5	99	91.053	Cavia_porcellus
MGP_SPRETEiJ_G0034533	Pabpc5	99	95.515	ENSCCAG00000032154	PABPC5	99	95.515	Cebus_capucinus
MGP_SPRETEiJ_G0034533	Pabpc5	99	95.251	ENSCATG00000043083	PABPC5	99	95.251	Cercocebus_atys
MGP_SPRETEiJ_G0034533	Pabpc5	99	92.368	ENSCLAG00000000647	PABPC5	99	92.368	Chinchilla_lanigera
MGP_SPRETEiJ_G0034533	Pabpc5	99	95.251	ENSCSAG00000000065	PABPC5	99	95.251	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0034533	Pabpc5	99	95.251	ENSCANG00000011473	PABPC5	99	95.251	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0034533	Pabpc5	99	92.105	ENSCGRG00000018699	Pabpc5	99	92.105	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0034533	Pabpc5	99	76.115	ENSETEG00000011832	PABPC5	99	76.115	Echinops_telfairi
MGP_SPRETEiJ_G0034533	Pabpc5	99	94.474	ENSEASG00005014396	PABPC5	99	94.474	Equus_asinus_asinus
MGP_SPRETEiJ_G0034533	Pabpc5	99	94.474	ENSECAG00000003452	PABPC5	99	94.474	Equus_caballus
MGP_SPRETEiJ_G0034533	Pabpc5	99	93.684	ENSFCAG00000004998	PABPC5	99	93.684	Felis_catus
MGP_SPRETEiJ_G0034533	Pabpc5	99	92.895	ENSFDAG00000000126	PABPC5	99	92.895	Fukomys_damarensis
MGP_SPRETEiJ_G0034533	Pabpc5	99	95.515	ENSGGOG00000007622	PABPC5	99	95.515	Gorilla_gorilla
MGP_SPRETEiJ_G0034533	Pabpc5	95	91.743	ENSJJAG00000011960	Pabpc5	100	91.743	Jaculus_jaculus
MGP_SPRETEiJ_G0034533	Pabpc5	99	95.251	ENSMFAG00000024561	PABPC5	99	95.251	Macaca_fascicularis
MGP_SPRETEiJ_G0034533	Pabpc5	99	95.251	ENSMMUG00000011562	PABPC5	99	95.251	Macaca_mulatta
MGP_SPRETEiJ_G0034533	Pabpc5	99	95.251	ENSMNEG00000037604	PABPC5	99	95.251	Macaca_nemestrina
MGP_SPRETEiJ_G0034533	Pabpc5	99	95.251	ENSMLEG00000028318	PABPC5	99	95.251	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0034533	Pabpc5	99	93.947	ENSMICG00000041706	PABPC5	99	93.947	Microcebus_murinus
MGP_SPRETEiJ_G0034533	Pabpc5	99	93.684	ENSMOCG00000001554	Pabpc5	99	93.684	Microtus_ochrogaster
MGP_SPRETEiJ_G0034533	Pabpc5	100	99.475	MGP_CAROLIEiJ_G0033367	Pabpc5	100	99.475	Mus_caroli
MGP_SPRETEiJ_G0034533	Pabpc5	100	100.000	ENSMUSG00000034732	Pabpc5	100	100.000	Mus_musculus
MGP_SPRETEiJ_G0034533	Pabpc5	99	99.737	MGP_PahariEiJ_G0031908	Pabpc5	99	99.737	Mus_pahari
MGP_SPRETEiJ_G0034533	Pabpc5	99	93.421	ENSMPUG00000018465	PABPC5	99	93.421	Mustela_putorius_furo
MGP_SPRETEiJ_G0034533	Pabpc5	99	93.158	ENSMLUG00000008244	PABPC5	99	93.158	Myotis_lucifugus
MGP_SPRETEiJ_G0034533	Pabpc5	95	92.661	ENSNGAG00000004371	Pabpc5	100	92.661	Nannospalax_galili
MGP_SPRETEiJ_G0034533	Pabpc5	99	95.515	ENSNLEG00000035086	PABPC5	99	95.515	Nomascus_leucogenys
MGP_SPRETEiJ_G0034533	Pabpc5	97	95.890	ENSOPRG00000000856	PABPC5	99	95.890	Ochotona_princeps
MGP_SPRETEiJ_G0034533	Pabpc5	99	94.474	ENSOCUG00000010919	PABPC5	99	94.474	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0034533	Pabpc5	99	93.421	ENSOGAG00000006882	PABPC5	99	93.421	Otolemur_garnettii
MGP_SPRETEiJ_G0034533	Pabpc5	99	93.947	ENSOARG00000010260	PABPC5	99	93.947	Ovis_aries
MGP_SPRETEiJ_G0034533	Pabpc5	99	95.515	ENSPPAG00000007378	PABPC5	99	95.515	Pan_paniscus
MGP_SPRETEiJ_G0034533	Pabpc5	99	93.684	ENSPPRG00000010742	PABPC5	99	93.684	Panthera_pardus
MGP_SPRETEiJ_G0034533	Pabpc5	99	93.684	ENSPTIG00000001480	PABPC5	99	93.684	Panthera_tigris_altaica
MGP_SPRETEiJ_G0034533	Pabpc5	99	95.515	ENSPTRG00000022078	PABPC5	99	95.515	Pan_troglodytes
MGP_SPRETEiJ_G0034533	Pabpc5	99	95.251	ENSPANG00000018282	PABPC5	99	95.251	Papio_anubis
MGP_SPRETEiJ_G0034533	Pabpc5	99	93.158	ENSPEMG00000000171	Pabpc5	99	93.158	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0034533	Pabpc5	99	95.515	ENSPPYG00000020526	PABPC5	99	95.515	Pongo_abelii
MGP_SPRETEiJ_G0034533	Pabpc5	98	95.238	ENSPCAG00000015577	PABPC5	99	95.238	Procavia_capensis
MGP_SPRETEiJ_G0034533	Pabpc5	99	94.211	ENSPCOG00000000676	PABPC5	99	94.211	Propithecus_coquereli
MGP_SPRETEiJ_G0034533	Pabpc5	99	94.474	ENSPVAG00000006465	PABPC5	99	94.474	Pteropus_vampyrus
MGP_SPRETEiJ_G0034533	Pabpc5	99	96.842	ENSRNOG00000003354	Pabpc5	99	96.842	Rattus_norvegicus
MGP_SPRETEiJ_G0034533	Pabpc5	99	95.251	ENSRBIG00000011760	PABPC5	99	95.251	Rhinopithecus_bieti
MGP_SPRETEiJ_G0034533	Pabpc5	99	95.251	ENSRROG00000036708	PABPC5	99	95.251	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0034533	Pabpc5	99	95.251	ENSSBOG00000008658	PABPC5	99	95.251	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0034533	Pabpc5	99	91.316	ENSSARG00000014012	PABPC5	99	91.316	Sorex_araneus
MGP_SPRETEiJ_G0034533	Pabpc5	99	93.421	ENSSSCG00000040194	PABPC5	99	93.421	Sus_scrofa
MGP_SPRETEiJ_G0034533	Pabpc5	99	95.000	ENSTBEG00000016482	PABPC5	99	95.000	Tupaia_belangeri
MGP_SPRETEiJ_G0034533	Pabpc5	99	93.684	ENSUAMG00000013627	PABPC5	99	93.684	Ursus_americanus
MGP_SPRETEiJ_G0034533	Pabpc5	99	93.421	ENSUMAG00000023934	PABPC5	99	93.421	Ursus_maritimus
MGP_SPRETEiJ_G0034533	Pabpc5	99	93.947	ENSVPAG00000001063	PABPC5	99	93.947	Vicugna_pacos
MGP_SPRETEiJ_G0034533	Pabpc5	99	93.947	ENSVVUG00000013172	PABPC5	99	93.947	Vulpes_vulpes