EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_SPRETEiJ_G0034548 (Gene tree)
Gene ID: -
Gene Symbol: Cstf2
Alias: C630034J23Rik|Cstf64
Full Name: cleavage stimulation factor%2C 3' pre-RNA subunit 2
Gene Type: protein_coding
Species: Mus_spretus
Status: putative
Strand: Plus strand
Length: 27977 bases
Position: chrX:112797112-112825088
Accession: 1343054
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_SPRETEiJ_P0096394	RRM_1	PF00076.22	2.5e-25	1	1
MGP_SPRETEiJ_P0096392	RRM_1	PF00076.22	2.7e-25	1	1
MGP_SPRETEiJ_P0096393	RRM_1	PF00076.22	2.9e-25	1	1
MGP_SPRETEiJ_P0096397	RRM_1	PF00076.22	2.2e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_SPRETEiJ_T0096398	-	4522	-	MGP_SPRETEiJ_P0096398	629 (aa)	-	-
MGP_SPRETEiJ_T0096399	-	775	-	MGP_SPRETEiJ_P0096399	258 (aa)	-	-
MGP_SPRETEiJ_T0096392	-	3690	-	MGP_SPRETEiJ_P0096392	554 (aa)	-	-
MGP_SPRETEiJ_T0096393	-	4533	-	MGP_SPRETEiJ_P0096393	580 (aa)	-	-
MGP_SPRETEiJ_T0096396	-	7527	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0096397	-	552	-	MGP_SPRETEiJ_P0096397	184 (aa)	-	UPI0000EE0598
MGP_SPRETEiJ_T0096394	-	2733	-	MGP_SPRETEiJ_P0096394	510 (aa)	-	-
MGP_SPRETEiJ_T0096395	-	743	-	-	- (aa)	-	-
MGP_SPRETEiJ_T0096400	-	574	-	MGP_SPRETEiJ_P0096400	191 (aa)	-	-

Gene Model

Click here to download MGP_SPRETEiJ_G0034548's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_SPRETEiJ_G0034548's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_SPRETEiJ_G0034548	Cstf2	86	87.342	MGP_SPRETEiJ_G0023790	Cstf2t	99	63.775

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_SPRETEiJ_G0034548	Cstf2	100	93.276	ENSG00000101811	CSTF2	96	98.140	Homo_sapiens
MGP_SPRETEiJ_G0034548	Cstf2	84	91.613	ENSAPOG00000005630	cstf2	96	75.986	Acanthochromis_polyacanthus
MGP_SPRETEiJ_G0034548	Cstf2	100	88.633	ENSAMEG00000002082	CSTF2	100	88.633	Ailuropoda_melanoleuca
MGP_SPRETEiJ_G0034548	Cstf2	84	92.258	ENSACIG00000012852	cstf2	96	76.259	Amphilophus_citrinellus
MGP_SPRETEiJ_G0034548	Cstf2	85	91.026	ENSAOCG00000020905	cstf2	96	76.173	Amphiprion_ocellaris
MGP_SPRETEiJ_G0034548	Cstf2	84	91.613	ENSAPEG00000006526	cstf2	96	76.534	Amphiprion_percula
MGP_SPRETEiJ_G0034548	Cstf2	84	92.258	ENSATEG00000018186	cstf2	96	76.241	Anabas_testudineus
MGP_SPRETEiJ_G0034548	Cstf2	87	91.875	ENSAPLG00000007255	CSTF2	98	73.244	Anas_platyrhynchos
MGP_SPRETEiJ_G0034548	Cstf2	100	92.369	ENSANAG00000022342	CSTF2	100	92.369	Aotus_nancymaae
MGP_SPRETEiJ_G0034548	Cstf2	85	92.308	ENSACLG00000000779	cstf2	93	77.061	Astatotilapia_calliptera
MGP_SPRETEiJ_G0034548	Cstf2	94	80.992	ENSAMXG00000021477	cstf2	96	98.413	Astyanax_mexicanus
MGP_SPRETEiJ_G0034548	Cstf2	100	90.690	ENSBTAG00000003547	CSTF2	100	90.690	Bos_taurus
MGP_SPRETEiJ_G0034548	Cstf2	100	92.414	ENSCJAG00000004422	CSTF2	100	93.603	Callithrix_jacchus
MGP_SPRETEiJ_G0034548	Cstf2	100	92.069	ENSCAFG00000017551	CSTF2	100	92.069	Canis_familiaris
MGP_SPRETEiJ_G0034548	Cstf2	100	92.528	ENSCAFG00020007619	CSTF2	100	92.528	Canis_lupus_dingo
MGP_SPRETEiJ_G0034548	Cstf2	100	90.345	ENSCHIG00000016994	CSTF2	100	90.345	Capra_hircus
MGP_SPRETEiJ_G0034548	Cstf2	100	93.276	ENSTSYG00000006529	CSTF2	100	93.276	Carlito_syrichta
MGP_SPRETEiJ_G0034548	Cstf2	100	92.241	ENSCPOG00000015255	CSTF2	100	92.241	Cavia_porcellus
MGP_SPRETEiJ_G0034548	Cstf2	100	92.414	ENSCCAG00000032975	CSTF2	100	92.414	Cebus_capucinus
MGP_SPRETEiJ_G0034548	Cstf2	100	92.759	ENSCATG00000022835	CSTF2	100	92.759	Cercocebus_atys
MGP_SPRETEiJ_G0034548	Cstf2	100	91.552	ENSCLAG00000001904	CSTF2	100	91.552	Chinchilla_lanigera
MGP_SPRETEiJ_G0034548	Cstf2	100	89.833	ENSCSAG00000010360	CSTF2	100	89.833	Chlorocebus_sabaeus
MGP_SPRETEiJ_G0034548	Cstf2	76	96.403	ENSCHOG00000012803	CSTF2	75	99.371	Choloepus_hoffmanni
MGP_SPRETEiJ_G0034548	Cstf2	87	92.500	ENSCPBG00000014293	CSTF2	100	74.121	Chrysemys_picta_bellii
MGP_SPRETEiJ_G0034548	Cstf2	100	92.931	ENSCANG00000030612	CSTF2	100	92.931	Colobus_angolensis_palliatus
MGP_SPRETEiJ_G0034548	Cstf2	100	97.931	ENSCGRG00001023023	Cstf2	100	97.931	Cricetulus_griseus_chok1gshd
MGP_SPRETEiJ_G0034548	Cstf2	100	94.483	ENSCGRG00000003897	Cstf2	100	94.483	Cricetulus_griseus_crigri
MGP_SPRETEiJ_G0034548	Cstf2	84	92.903	ENSCVAG00000005731	cstf2	95	77.737	Cyprinodon_variegatus
MGP_SPRETEiJ_G0034548	Cstf2	86	89.241	ENSDARG00000090788	cstf2	91	98.305	Danio_rerio
MGP_SPRETEiJ_G0034548	Cstf2	100	90.378	ENSDORG00000007195	Cstf2	100	90.378	Dipodomys_ordii
MGP_SPRETEiJ_G0034548	Cstf2	87	96.875	ENSETEG00000004931	CSTF2	68	94.595	Echinops_telfairi
MGP_SPRETEiJ_G0034548	Cstf2	100	89.000	ENSEASG00005001216	CSTF2	100	89.000	Equus_asinus_asinus
MGP_SPRETEiJ_G0034548	Cstf2	100	92.069	ENSECAG00000009325	CSTF2	100	92.069	Equus_caballus
MGP_SPRETEiJ_G0034548	Cstf2	100	91.724	ENSFCAG00000007000	CSTF2	100	91.724	Felis_catus
MGP_SPRETEiJ_G0034548	Cstf2	84	94.194	ENSFALG00000003859	CSTF2	100	73.545	Ficedula_albicollis
MGP_SPRETEiJ_G0034548	Cstf2	100	92.687	ENSFDAG00000002416	CSTF2	100	92.687	Fukomys_damarensis
MGP_SPRETEiJ_G0034548	Cstf2	85	91.026	ENSFHEG00000017065	cstf2	92	73.519	Fundulus_heteroclitus
MGP_SPRETEiJ_G0034548	Cstf2	86	85.443	ENSGMOG00000005145	cstf2	99	72.378	Gadus_morhua
MGP_SPRETEiJ_G0034548	Cstf2	87	91.875	ENSGALG00000006760	CSTF2	99	84.000	Gallus_gallus
MGP_SPRETEiJ_G0034548	Cstf2	85	91.026	ENSGAFG00000020027	cstf2	96	75.801	Gambusia_affinis
MGP_SPRETEiJ_G0034548	Cstf2	83	88.462	ENSGACG00000017326	cstf2	94	83.673	Gasterosteus_aculeatus
MGP_SPRETEiJ_G0034548	Cstf2	87	92.500	ENSGAGG00000006037	CSTF2	100	76.461	Gopherus_agassizii
MGP_SPRETEiJ_G0034548	Cstf2	100	93.276	ENSGGOG00000022267	CSTF2	100	93.276	Gorilla_gorilla
MGP_SPRETEiJ_G0034548	Cstf2	85	92.308	ENSHBUG00000016183	cstf2	93	75.972	Haplochromis_burtoni
MGP_SPRETEiJ_G0034548	Cstf2	100	92.414	ENSHGLG00000000659	-	100	92.414	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0034548	Cstf2	100	78.448	ENSHGLG00000013455	-	100	78.448	Heterocephalus_glaber_female
MGP_SPRETEiJ_G0034548	Cstf2	100	92.414	ENSHGLG00100001130	-	100	92.414	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0034548	Cstf2	100	78.621	ENSHGLG00100015391	-	100	78.621	Heterocephalus_glaber_male
MGP_SPRETEiJ_G0034548	Cstf2	83	92.157	ENSHCOG00000005157	cstf2	97	77.818	Hippocampus_comes
MGP_SPRETEiJ_G0034548	Cstf2	86	89.873	ENSIPUG00000017839	cstf2	99	59.354	Ictalurus_punctatus
MGP_SPRETEiJ_G0034548	Cstf2	100	92.759	ENSSTOG00000023445	CSTF2	100	92.759	Ictidomys_tridecemlineatus
MGP_SPRETEiJ_G0034548	Cstf2	100	93.793	ENSJJAG00000020507	Cstf2	100	93.793	Jaculus_jaculus
MGP_SPRETEiJ_G0034548	Cstf2	85	91.026	ENSKMAG00000001068	cstf2	96	58.938	Kryptolebias_marmoratus
MGP_SPRETEiJ_G0034548	Cstf2	56	94.915	ENSLBEG00000028720	cstf2	85	94.915	Labrus_bergylta
MGP_SPRETEiJ_G0034548	Cstf2	87	90.625	ENSLACG00000015927	CSTF2	99	63.011	Latimeria_chalumnae
MGP_SPRETEiJ_G0034548	Cstf2	84	91.613	ENSLOCG00000015300	cstf2	93	63.435	Lepisosteus_oculatus
MGP_SPRETEiJ_G0034548	Cstf2	100	88.448	ENSLAFG00000000474	CSTF2	100	88.448	Loxodonta_africana
MGP_SPRETEiJ_G0034548	Cstf2	100	92.931	ENSMFAG00000043888	CSTF2	100	92.931	Macaca_fascicularis
MGP_SPRETEiJ_G0034548	Cstf2	100	90.161	ENSMMUG00000013008	CSTF2	99	92.389	Macaca_mulatta
MGP_SPRETEiJ_G0034548	Cstf2	100	92.931	ENSMNEG00000041824	CSTF2	100	92.931	Macaca_nemestrina
MGP_SPRETEiJ_G0034548	Cstf2	100	92.931	ENSMLEG00000036870	CSTF2	100	92.931	Mandrillus_leucophaeus
MGP_SPRETEiJ_G0034548	Cstf2	85	91.026	ENSMAMG00000020364	cstf2	95	73.507	Mastacembelus_armatus
MGP_SPRETEiJ_G0034548	Cstf2	84	92.903	ENSMZEG00005007200	cstf2	96	77.061	Maylandia_zebra
MGP_SPRETEiJ_G0034548	Cstf2	86	93.038	ENSMGAG00000004139	CSTF2	99	83.267	Meleagris_gallopavo
MGP_SPRETEiJ_G0034548	Cstf2	100	97.931	ENSMAUG00000000965	Cstf2	100	97.931	Mesocricetus_auratus
MGP_SPRETEiJ_G0034548	Cstf2	100	93.164	ENSMICG00000014121	CSTF2	100	93.164	Microcebus_murinus
MGP_SPRETEiJ_G0034548	Cstf2	100	96.034	ENSMOCG00000008081	Cstf2	100	96.034	Microtus_ochrogaster
MGP_SPRETEiJ_G0034548	Cstf2	85	91.026	ENSMMOG00000000538	cstf2	96	54.159	Mola_mola
MGP_SPRETEiJ_G0034548	Cstf2	87	93.750	ENSMODG00000011785	CSTF2	100	77.340	Monodelphis_domestica
MGP_SPRETEiJ_G0034548	Cstf2	100	100.000	MGP_CAROLIEiJ_G0033383	Cstf2	100	100.000	Mus_caroli
MGP_SPRETEiJ_G0034548	Cstf2	100	100.000	ENSMUSG00000031256	Cstf2	100	100.000	Mus_musculus
MGP_SPRETEiJ_G0034548	Cstf2	100	99.523	MGP_PahariEiJ_G0031923	Cstf2	100	99.523	Mus_pahari
MGP_SPRETEiJ_G0034548	Cstf2	100	91.640	ENSMPUG00000002339	CSTF2	100	91.640	Mustela_putorius_furo
MGP_SPRETEiJ_G0034548	Cstf2	100	91.139	ENSMLUG00000004598	CSTF2	98	91.139	Myotis_lucifugus
MGP_SPRETEiJ_G0034548	Cstf2	100	95.690	ENSNGAG00000021985	Cstf2	100	95.690	Nannospalax_galili
MGP_SPRETEiJ_G0034548	Cstf2	82	94.040	ENSNBRG00000021694	cstf2	100	56.147	Neolamprologus_brichardi
MGP_SPRETEiJ_G0034548	Cstf2	100	92.931	ENSNLEG00000007510	CSTF2	100	92.931	Nomascus_leucogenys
MGP_SPRETEiJ_G0034548	Cstf2	87	91.250	ENSMEUG00000007875	-	100	76.552	Notamacropus_eugenii
MGP_SPRETEiJ_G0034548	Cstf2	81	95.302	ENSMEUG00000014025	-	100	78.072	Notamacropus_eugenii
MGP_SPRETEiJ_G0034548	Cstf2	87	93.750	ENSMEUG00000011186	-	100	81.552	Notamacropus_eugenii
MGP_SPRETEiJ_G0034548	Cstf2	84	99.351	ENSOPRG00000003106	CSTF2	87	80.995	Ochotona_princeps
MGP_SPRETEiJ_G0034548	Cstf2	100	91.207	ENSODEG00000002059	CSTF2	100	91.207	Octodon_degus
MGP_SPRETEiJ_G0034548	Cstf2	85	91.667	ENSONIG00000002631	cstf2	89	73.026	Oreochromis_niloticus
MGP_SPRETEiJ_G0034548	Cstf2	87	100.000	ENSOANG00000004208	CSTF2	87	92.857	Ornithorhynchus_anatinus
MGP_SPRETEiJ_G0034548	Cstf2	100	91.897	ENSOCUG00000010468	CSTF2	100	91.897	Oryctolagus_cuniculus
MGP_SPRETEiJ_G0034548	Cstf2	85	90.385	ENSORLG00000001380	cstf2	96	75.000	Oryzias_latipes
MGP_SPRETEiJ_G0034548	Cstf2	85	90.385	ENSORLG00020021917	cstf2	96	75.352	Oryzias_latipes_hni
MGP_SPRETEiJ_G0034548	Cstf2	85	90.385	ENSORLG00015011996	cstf2	96	75.000	Oryzias_latipes_hsok
MGP_SPRETEiJ_G0034548	Cstf2	84	92.258	ENSOMEG00000015507	cstf2	96	74.825	Oryzias_melastigma
MGP_SPRETEiJ_G0034548	Cstf2	100	91.297	ENSOGAG00000011192	CSTF2	100	89.557	Otolemur_garnettii
MGP_SPRETEiJ_G0034548	Cstf2	100	90.345	ENSOARG00000001022	CSTF2	100	90.345	Ovis_aries
MGP_SPRETEiJ_G0034548	Cstf2	100	93.276	ENSPPAG00000031804	CSTF2	100	93.276	Pan_paniscus
MGP_SPRETEiJ_G0034548	Cstf2	100	91.897	ENSPPRG00000022492	CSTF2	100	91.897	Panthera_pardus
MGP_SPRETEiJ_G0034548	Cstf2	100	91.552	ENSPTIG00000009922	CSTF2	100	91.552	Panthera_tigris_altaica
MGP_SPRETEiJ_G0034548	Cstf2	100	93.276	ENSPTRG00000022090	CSTF2	100	93.276	Pan_troglodytes
MGP_SPRETEiJ_G0034548	Cstf2	100	93.323	ENSPANG00000002303	CSTF2	100	93.323	Papio_anubis
MGP_SPRETEiJ_G0034548	Cstf2	84	92.258	ENSPKIG00000005033	cstf2	97	59.284	Paramormyrops_kingsleyae
MGP_SPRETEiJ_G0034548	Cstf2	84	92.258	ENSPMGG00000006534	cstf2	96	74.737	Periophthalmus_magnuspinnatus
MGP_SPRETEiJ_G0034548	Cstf2	100	97.069	ENSPEMG00000019415	Cstf2	100	97.069	Peromyscus_maniculatus_bairdii
MGP_SPRETEiJ_G0034548	Cstf2	87	93.750	ENSPCIG00000002989	CSTF2	100	77.124	Phascolarctos_cinereus
MGP_SPRETEiJ_G0034548	Cstf2	85	91.667	ENSPLAG00000011176	cstf2	95	77.737	Poecilia_latipinna
MGP_SPRETEiJ_G0034548	Cstf2	85	91.667	ENSPMEG00000017743	cstf2	96	75.972	Poecilia_mexicana
MGP_SPRETEiJ_G0034548	Cstf2	84	92.258	ENSPREG00000011481	cstf2	84	63.636	Poecilia_reticulata
MGP_SPRETEiJ_G0034548	Cstf2	100	90.000	ENSPPYG00000020541	CSTF2	100	90.000	Pongo_abelii
MGP_SPRETEiJ_G0034548	Cstf2	100	92.931	ENSPCOG00000027744	CSTF2	100	92.931	Propithecus_coquereli
MGP_SPRETEiJ_G0034548	Cstf2	97	77.143	ENSPVAG00000008342	CSTF2	100	76.429	Pteropus_vampyrus
MGP_SPRETEiJ_G0034548	Cstf2	85	92.308	ENSPNYG00000010852	cstf2	94	91.781	Pundamilia_nyererei
MGP_SPRETEiJ_G0034548	Cstf2	84	90.968	ENSPNAG00000018887	cstf2	97	60.794	Pygocentrus_nattereri
MGP_SPRETEiJ_G0034548	Cstf2	100	98.103	ENSRNOG00000048025	Cstf2	100	98.103	Rattus_norvegicus
MGP_SPRETEiJ_G0034548	Cstf2	100	91.207	ENSRBIG00000030745	CSTF2	100	91.207	Rhinopithecus_bieti
MGP_SPRETEiJ_G0034548	Cstf2	100	92.069	ENSRROG00000045042	CSTF2	100	92.069	Rhinopithecus_roxellana
MGP_SPRETEiJ_G0034548	Cstf2	100	92.846	ENSSBOG00000021649	CSTF2	100	92.846	Saimiri_boliviensis_boliviensis
MGP_SPRETEiJ_G0034548	Cstf2	96	98.214	ENSSHAG00000003681	CSTF2	92	77.226	Sarcophilus_harrisii
MGP_SPRETEiJ_G0034548	Cstf2	84	92.258	ENSSFOG00015006348	cstf2	97	62.862	Scleropages_formosus
MGP_SPRETEiJ_G0034548	Cstf2	86	91.139	ENSSMAG00000013463	cstf2	96	58.596	Scophthalmus_maximus
MGP_SPRETEiJ_G0034548	Cstf2	87	91.875	ENSSPUG00000005288	-	99	85.185	Sphenodon_punctatus
MGP_SPRETEiJ_G0034548	Cstf2	100	91.034	ENSSSCG00000012486	CSTF2	100	92.256	Sus_scrofa
MGP_SPRETEiJ_G0034548	Cstf2	87	91.875	ENSTGUG00000002253	CSTF2	100	78.173	Taeniopygia_guttata
MGP_SPRETEiJ_G0034548	Cstf2	84	90.323	ENSTNIG00000016860	cstf2	99	58.874	Tetraodon_nigroviridis
MGP_SPRETEiJ_G0034548	Cstf2	57	100.000	ENSTBEG00000010029	-	69	100.000	Tupaia_belangeri
MGP_SPRETEiJ_G0034548	Cstf2	100	91.897	ENSTTRG00000013556	CSTF2	100	91.897	Tursiops_truncatus
MGP_SPRETEiJ_G0034548	Cstf2	100	92.587	ENSUAMG00000026605	CSTF2	100	92.587	Ursus_americanus
MGP_SPRETEiJ_G0034548	Cstf2	100	85.851	ENSUMAG00000012417	CSTF2	100	93.772	Ursus_maritimus
MGP_SPRETEiJ_G0034548	Cstf2	87	96.875	ENSVPAG00000006466	CSTF2	72	90.962	Vicugna_pacos
MGP_SPRETEiJ_G0034548	Cstf2	100	92.241	ENSVVUG00000004717	CSTF2	100	92.241	Vulpes_vulpes
MGP_SPRETEiJ_G0034548	Cstf2	87	90.625	ENSXETG00000009642	cstf2	87	88.571	Xenopus_tropicalis
MGP_SPRETEiJ_G0034548	Cstf2	80	92.517	ENSXCOG00000016436	cstf2	83	96.970	Xiphophorus_couchianus
MGP_SPRETEiJ_G0034548	Cstf2	85	91.026	ENSXMAG00000013524	cstf2	79	75.887	Xiphophorus_maculatus