EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_WSBEiJ_G0021400 (Gene tree)
Gene ID: -
Gene Symbol: Apobec3
Alias: APOBEC3|Apobec|Arp3|BC003314|CEM15|Cem15|Gm20117|Rfv-3|Rfv3
Full Name: apolipoprotein B mRNA editing enzyme%2C catalytic polypeptide 3
Gene Type: protein_coding
Species: Mus_musculus_wsbeij
Status: putative
Strand: Plus strand
Length: 30366 bases
Position: chr15:80002207-80032572
Accession: 1933111
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_WSBEiJ_P0040854	APOBEC_N	PF08210.11	9.3e-82	1	2
MGP_WSBEiJ_P0040854	APOBEC_N	PF08210.11	9.3e-82	2	2
MGP_WSBEiJ_P0040855	APOBEC_N	PF08210.11	1.2e-81	1	2
MGP_WSBEiJ_P0040855	APOBEC_N	PF08210.11	1.2e-81	2	2
MGP_WSBEiJ_P0040857	APOBEC_N	PF08210.11	1.3e-81	1	2
MGP_WSBEiJ_P0040857	APOBEC_N	PF08210.11	1.3e-81	2	2
MGP_WSBEiJ_P0040850	APOBEC_N	PF08210.11	2.2e-27	1	1
MGP_WSBEiJ_P0040849	APOBEC_N	PF08210.11	2.8e-26	1	1
MGP_WSBEiJ_P0040858	APOBEC_N	PF08210.11	3.1e-24	1	1
MGP_WSBEiJ_P0040854	APOBEC_C	PF05240.14	2.4e-53	1	2
MGP_WSBEiJ_P0040854	APOBEC_C	PF05240.14	2.4e-53	2	2
MGP_WSBEiJ_P0040855	APOBEC_C	PF05240.14	2.9e-53	1	2
MGP_WSBEiJ_P0040855	APOBEC_C	PF05240.14	2.9e-53	2	2
MGP_WSBEiJ_P0040857	APOBEC_C	PF05240.14	3.1e-53	1	2
MGP_WSBEiJ_P0040857	APOBEC_C	PF05240.14	3.1e-53	2	2
MGP_WSBEiJ_P0040850	APOBEC_C	PF05240.14	1.2e-27	1	1
MGP_WSBEiJ_P0040849	APOBEC_C	PF05240.14	1.4e-27	1	1
MGP_WSBEiJ_P0040858	APOBEC_C	PF05240.14	3.6e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_WSBEiJ_T0040852	-	699	-	MGP_WSBEiJ_P0040852	79 (aa)	-	-
MGP_WSBEiJ_T0040853	-	1217	-	MGP_WSBEiJ_P0040853	46 (aa)	-	-
MGP_WSBEiJ_T0040850	-	826	-	MGP_WSBEiJ_P0040850	151 (aa)	-	-
MGP_WSBEiJ_T0040851	-	600	-	-	- (aa)	-	-
MGP_WSBEiJ_T0040856	-	2225	-	MGP_WSBEiJ_P0040856	392 (aa)	-	-
MGP_WSBEiJ_T0040857	-	1323	-	MGP_WSBEiJ_P0040857	440 (aa)	-	-
MGP_WSBEiJ_T0040854	-	1977	-	MGP_WSBEiJ_P0040854	407 (aa)	-	-
MGP_WSBEiJ_T0040855	-	2765	-	MGP_WSBEiJ_P0040855	430 (aa)	-	-
MGP_WSBEiJ_T0040858	-	650	-	MGP_WSBEiJ_P0040858	85 (aa)	-	-
MGP_WSBEiJ_T0040859	-	739	-	-	- (aa)	-	-
MGP_WSBEiJ_T0040849	-	759	XM_006521551	MGP_WSBEiJ_P0040849	166 (aa)	XP_006521614	Q99J72
MGP_WSBEiJ_T0040861	-	721	-	-	- (aa)	-	-
MGP_WSBEiJ_T0040860	-	2087	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_WSBEiJ_G0021400's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_WSBEiJ_G0021400's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_WSBEiJ_G0021400	Apobec3	96	40.964	MGP_WSBEiJ_G0030397	Aicda	93	38.251
MGP_WSBEiJ_G0021400	Apobec3	96	35.366	MGP_WSBEiJ_G0030398	Apobec1	74	35.789
MGP_WSBEiJ_G0021400	Apobec3	98	33.721	MGP_WSBEiJ_G0023144	Apobec2	77	33.898