EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_WSBEiJ_G0022441 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc6
Alias: 4932702K14Rik|AI428050|Pabpc3
Full Name: poly(A) binding protein%2C cytoplasmic 6
Gene Type: protein_coding
Species: Mus_musculus_wsbeij
Status: putative
Strand: Minus strand
Length: 3208 bases
Position: chr17:7486871-7490078
Accession: 1914793
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_WSBEiJ_P0044599	PABP	PF00658.18	1.4e-26	1	1
MGP_WSBEiJ_P0044599	RRM_5	PF13893.6	4.3e-07	1	1
MGP_WSBEiJ_P0044599	RRM_1	PF00076.22	1.9e-89	1	4
MGP_WSBEiJ_P0044599	RRM_1	PF00076.22	1.9e-89	2	4
MGP_WSBEiJ_P0044599	RRM_1	PF00076.22	1.9e-89	3	4
MGP_WSBEiJ_P0044599	RRM_1	PF00076.22	1.9e-89	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_WSBEiJ_T0044599	-	3208	-	MGP_WSBEiJ_P0044599	643 (aa)	-	Q9D4E6

Gene Model

Click here to download MGP_WSBEiJ_G0022441's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_WSBEiJ_G0022441's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_WSBEiJ_G0022441	Pabpc6	61	36.145	MGP_WSBEiJ_G0033593	Elavl3	92	36.145
MGP_WSBEiJ_G0022441	Pabpc6	60	37.349	MGP_WSBEiJ_G0027657	Elavl2	90	37.349
MGP_WSBEiJ_G0022441	Pabpc6	57	34.667	MGP_WSBEiJ_G0029179	Rbm19	70	34.667
MGP_WSBEiJ_G0022441	Pabpc6	56	34.014	MGP_WSBEiJ_G0032221	Tial1	94	31.783
MGP_WSBEiJ_G0022441	Pabpc6	53	86.525	MGP_WSBEiJ_G0027947	-	100	86.525
MGP_WSBEiJ_G0022441	Pabpc6	58	36.905	MGP_WSBEiJ_G0030144	Tia1	96	36.905
MGP_WSBEiJ_G0022441	Pabpc6	97	56.467	MGP_WSBEiJ_G0026082	Pabpc1l	99	56.467
MGP_WSBEiJ_G0022441	Pabpc6	53	35.526	MGP_WSBEiJ_G0025390	Celf1	52	35.526
MGP_WSBEiJ_G0022441	Pabpc6	60	32.468	MGP_WSBEiJ_G0027789	Elavl4	88	32.468
MGP_WSBEiJ_G0022441	Pabpc6	62	36.842	MGP_WSBEiJ_G0023480	Celf4	62	36.842
MGP_WSBEiJ_G0022441	Pabpc6	58	64.497	MGP_WSBEiJ_G0026432	Pabpc4l	98	64.497
MGP_WSBEiJ_G0022441	Pabpc6	99	70.031	MGP_WSBEiJ_G0023640	Pabpc2	99	69.876
MGP_WSBEiJ_G0022441	Pabpc6	72	36.585	MGP_WSBEiJ_G0026790	Celf3	80	37.500
MGP_WSBEiJ_G0022441	Pabpc6	64	39.062	MGP_WSBEiJ_G0034019	Celf6	77	39.062
MGP_WSBEiJ_G0022441	Pabpc6	99	87.725	MGP_WSBEiJ_G0021110	Pabpc1	99	87.725
MGP_WSBEiJ_G0022441	Pabpc6	59	34.091	MGP_WSBEiJ_G0034510	Rbms3	77	33.708
MGP_WSBEiJ_G0022441	Pabpc6	71	70.640	MGP_WSBEiJ_G0017782	-	98	70.640
MGP_WSBEiJ_G0022441	Pabpc6	51	34.211	MGP_WSBEiJ_G0024598	Celf2	57	34.211
MGP_WSBEiJ_G0022441	Pabpc6	59	58.470	MGP_WSBEiJ_G0035146	Pabpc5	95	58.445