EuRBPDB

Description

Ensembl ID: MGP_WSBEiJ_G0022920 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39b
Alias: 0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh|Uap56
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
Gene Type: protein_coding
Species: Mus_musculus_wsbeij
Status: putative
Strand: Plus strand
Length: 13064 bases
Position: chr17:35051305-35064368
Accession: 99240
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_WSBEiJ_P0046415	ResIII	PF04851.15	1.5e-07	1	1
MGP_WSBEiJ_P0046416	ResIII	PF04851.15	2.3e-07	1	1
MGP_WSBEiJ_P0046418	ResIII	PF04851.15	2.3e-07	1	1
MGP_WSBEiJ_P0046420	ResIII	PF04851.15	2.3e-07	1	1
MGP_WSBEiJ_P0046415	DEAD	PF00270.29	8e-39	1	1
MGP_WSBEiJ_P0046416	DEAD	PF00270.29	1.2e-38	1	1
MGP_WSBEiJ_P0046418	DEAD	PF00270.29	1.2e-38	1	1
MGP_WSBEiJ_P0046420	DEAD	PF00270.29	1.2e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_WSBEiJ_T0046415	-	1210	-	MGP_WSBEiJ_P0046415	324 (aa)	-	Q9Z1N5
MGP_WSBEiJ_T0046416	-	1735	-	MGP_WSBEiJ_P0046416	428 (aa)	-	-
MGP_WSBEiJ_T0046417	-	1710	-	-	- (aa)	-	-
MGP_WSBEiJ_T0046420	-	1766	-	MGP_WSBEiJ_P0046420	428 (aa)	-	-
MGP_WSBEiJ_T0046418	-	2846	-	MGP_WSBEiJ_P0046418	428 (aa)	-	-
MGP_WSBEiJ_T0046419	-	741	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_WSBEiJ_G0022920	Ddx39b	63	30.804	MGP_WSBEiJ_G0016327	D1Pas1	57	30.105
MGP_WSBEiJ_G0022920	Ddx39b	91	33.083	MGP_WSBEiJ_G0033260	Ddx19b	82	33.083
MGP_WSBEiJ_G0022920	Ddx39b	100	90.888	MGP_WSBEiJ_G0032968	Ddx39	100	90.888
MGP_WSBEiJ_G0022920	Ddx39b	84	31.903	MGP_WSBEiJ_G0033655	Ddx25	82	32.020
MGP_WSBEiJ_G0022920	Ddx39b	86	35.501	MGP_WSBEiJ_G0021982	Eif4a2	89	35.501
MGP_WSBEiJ_G0022920	Ddx39b	84	32.970	MGP_WSBEiJ_G0026155	Ddx27	54	32.134
MGP_WSBEiJ_G0022920	Ddx39b	87	37.166	MGP_WSBEiJ_G0017908	Eif4a1	91	37.166
MGP_WSBEiJ_G0022920	Ddx39b	88	34.037	MGP_WSBEiJ_G0030576	Ddx47	90	31.926
MGP_WSBEiJ_G0022920	Ddx39b	63	30.804	MGP_WSBEiJ_G0034686	Ddx3x	56	30.105
MGP_WSBEiJ_G0022920	Ddx39b	85	38.356	MGP_WSBEiJ_G0018833	Eif4a3	88	38.356
MGP_WSBEiJ_G0022920	Ddx39b	86	32.891	MGP_WSBEiJ_G0032828	Ddx49	97	33.046