EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_WSBEiJ_G0026059 (Gene tree)
Gene ID: -
Gene Symbol: Chd6
Alias: 5430439G14Rik|6330406J24Rik|CHD-6|Kiaa1335
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Mus_musculus_wsbeij
Status: putative
Strand: Minus strand
Length: 168244 bases
Position: chr2:164920196-165088439
Accession: 1918639
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_WSBEiJ_P0057941	ResIII	PF04851.15	4.1e-08	1	1
MGP_WSBEiJ_P0057937	ResIII	PF04851.15	2.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_WSBEiJ_T0057944	-	616	-	-	- (aa)	-	-
MGP_WSBEiJ_T0057945	-	646	-	-	- (aa)	-	-
MGP_WSBEiJ_T0057946	-	675	-	MGP_WSBEiJ_P0057946	217 (aa)	-	-
MGP_WSBEiJ_T0057947	-	5051	-	-	- (aa)	-	-
MGP_WSBEiJ_T0057940	-	3970	-	-	- (aa)	-	-
MGP_WSBEiJ_T0057941	-	3608	-	MGP_WSBEiJ_P0057941	1183 (aa)	-	-
MGP_WSBEiJ_T0057942	-	601	-	-	- (aa)	-	-
MGP_WSBEiJ_T0057943	-	3092	-	-	- (aa)	-	-
MGP_WSBEiJ_T0057939	-	764	-	-	- (aa)	-	-
MGP_WSBEiJ_T0057938	-	733	-	-	- (aa)	-	-
MGP_WSBEiJ_T0057937	-	10515	XM_006500181	MGP_WSBEiJ_P0057937	2711 (aa)	XP_011238078	A3KFM7

Gene Model

Click here to download MGP_WSBEiJ_G0026059's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_WSBEiJ_G0026059's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_WSBEiJ_G0026059	Chd6	84	72.837	MGP_WSBEiJ_G0027273	Chd7	72	64.905
MGP_WSBEiJ_G0026059	Chd6	66	36.621	MGP_WSBEiJ_G0028376	Chd5	51	34.657
MGP_WSBEiJ_G0026059	Chd6	87	68.979	MGP_WSBEiJ_G0033056	Chd9	72	62.298
MGP_WSBEiJ_G0026059	Chd6	61	37.625	MGP_WSBEiJ_G0031519	Chd2	63	32.583