EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_WSBEiJ_G0026082 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc1l
Alias: 1810053B01Rik|Epab|ePAB
Full Name: poly(A) binding protein%2C cytoplasmic 1-like
Gene Type: protein_coding
Species: Mus_musculus_wsbeij
Status: putative
Strand: Plus strand
Length: 28082 bases
Position: chr2:168123458-168151539
Accession: 1922908
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_WSBEiJ_P0058025	PABP	PF00658.18	1.8e-23	1	1
MGP_WSBEiJ_P0058025	RRM_5	PF13893.6	3.1e-17	1	3
MGP_WSBEiJ_P0058025	RRM_5	PF13893.6	3.1e-17	2	3
MGP_WSBEiJ_P0058025	RRM_5	PF13893.6	3.1e-17	3	3
MGP_WSBEiJ_P0058025	RRM_1	PF00076.22	3.5e-90	1	4
MGP_WSBEiJ_P0058025	RRM_1	PF00076.22	3.5e-90	2	4
MGP_WSBEiJ_P0058025	RRM_1	PF00076.22	3.5e-90	3	4
MGP_WSBEiJ_P0058025	RRM_1	PF00076.22	3.5e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_WSBEiJ_T0058028	-	766	-	-	- (aa)	-	-
MGP_WSBEiJ_T0058029	-	328	-	-	- (aa)	-	-
MGP_WSBEiJ_T0058026	-	617	-	-	- (aa)	-	-
MGP_WSBEiJ_T0058027	-	438	-	-	- (aa)	-	-
MGP_WSBEiJ_T0058025	-	2370	XM_006499825	MGP_WSBEiJ_P0058025	607 (aa)	XP_006499888	A2A5N3

Gene Model

Click here to download MGP_WSBEiJ_G0026082's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_WSBEiJ_G0026082's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_WSBEiJ_G0026082	Pabpc1l	56	30.864	MGP_WSBEiJ_G0019952	Hnrnpa0	50	31.613
MGP_WSBEiJ_G0026082	Pabpc1l	60	35.870	MGP_WSBEiJ_G0016950	Celf5	63	35.870
MGP_WSBEiJ_G0026082	Pabpc1l	71	67.661	MGP_WSBEiJ_G0017782	-	97	67.661
MGP_WSBEiJ_G0026082	Pabpc1l	64	34.940	MGP_WSBEiJ_G0027657	Elavl2	92	34.940
MGP_WSBEiJ_G0026082	Pabpc1l	63	38.889	MGP_WSBEiJ_G0033593	Elavl3	59	30.488
MGP_WSBEiJ_G0026082	Pabpc1l	63	73.090	MGP_WSBEiJ_G0027947	-	100	79.433
MGP_WSBEiJ_G0026082	Pabpc1l	53	39.759	MGP_WSBEiJ_G0016876	Cirbp	91	39.759
MGP_WSBEiJ_G0026082	Pabpc1l	53	34.884	MGP_WSBEiJ_G0024598	Celf2	57	34.884
MGP_WSBEiJ_G0026082	Pabpc1l	64	57.022	MGP_WSBEiJ_G0035146	Pabpc5	96	56.944
MGP_WSBEiJ_G0026082	Pabpc1l	59	30.818	MGP_WSBEiJ_G0034510	Rbms3	77	30.818
MGP_WSBEiJ_G0026082	Pabpc1l	62	33.735	MGP_WSBEiJ_G0027789	Elavl4	89	33.735
MGP_WSBEiJ_G0026082	Pabpc1l	99	56.467	MGP_WSBEiJ_G0022441	Pabpc6	97	56.467
MGP_WSBEiJ_G0026082	Pabpc1l	57	34.118	MGP_WSBEiJ_G0026790	Celf3	67	32.857
MGP_WSBEiJ_G0026082	Pabpc1l	60	35.484	MGP_WSBEiJ_G0029179	Rbm19	72	36.066
MGP_WSBEiJ_G0026082	Pabpc1l	99	53.492	MGP_WSBEiJ_G0021110	Pabpc1	95	72.981
MGP_WSBEiJ_G0026082	Pabpc1l	59	38.095	MGP_WSBEiJ_G0030144	Tia1	87	38.095
MGP_WSBEiJ_G0026082	Pabpc1l	59	60.736	MGP_WSBEiJ_G0026432	Pabpc4l	95	60.736
MGP_WSBEiJ_G0026082	Pabpc1l	99	56.938	MGP_WSBEiJ_G0023640	Pabpc2	98	56.938