EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_WSBEiJ_G0026178 (Gene tree)
Gene ID: -
Gene Symbol: Sall4
Alias: 5730441M18Rik|AA407717|AL022809|AW536104|C330011P20Rik|C78083|C78563|Tex20
Full Name: sal-like 4 (Drosophila)
Gene Type: protein_coding
Species: Mus_musculus_wsbeij
Status: putative
Strand: Minus strand
Length: 22515 bases
Position: chr2:173244364-173266878
Accession: 2139360
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_WSBEiJ_P0058422	zf-C2H2	PF00096.26	1.3e-29	1	6
MGP_WSBEiJ_P0058422	zf-C2H2	PF00096.26	1.3e-29	2	6
MGP_WSBEiJ_P0058422	zf-C2H2	PF00096.26	1.3e-29	3	6
MGP_WSBEiJ_P0058422	zf-C2H2	PF00096.26	1.3e-29	4	6
MGP_WSBEiJ_P0058422	zf-C2H2	PF00096.26	1.3e-29	5	6
MGP_WSBEiJ_P0058422	zf-C2H2	PF00096.26	1.3e-29	6	6
MGP_WSBEiJ_P0058425	zf-C2H2	PF00096.26	2e-13	1	2
MGP_WSBEiJ_P0058425	zf-C2H2	PF00096.26	2e-13	2	2
MGP_WSBEiJ_P0058424	zf-C2H2	PF00096.26	3.2e-11	1	2
MGP_WSBEiJ_P0058424	zf-C2H2	PF00096.26	3.2e-11	2	2
MGP_WSBEiJ_P0058423	zf-C2H2	PF00096.26	3.2e-08	1	2
MGP_WSBEiJ_P0058423	zf-C2H2	PF00096.26	3.2e-08	2	2
MGP_WSBEiJ_P0058422	zf-met	PF12874.7	2.3e-11	1	1
MGP_WSBEiJ_P0058425	zf-met	PF12874.7	1.4e-09	1	2
MGP_WSBEiJ_P0058425	zf-met	PF12874.7	1.4e-09	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_WSBEiJ_T0058426	-	773	-	MGP_WSBEiJ_P0058426	215 (aa)	-	-
MGP_WSBEiJ_T0058427	-	423	-	-	- (aa)	-	-
MGP_WSBEiJ_T0058424	-	2534	-	MGP_WSBEiJ_P0058424	278 (aa)	-	-
MGP_WSBEiJ_T0058425	-	393	-	MGP_WSBEiJ_P0058425	131 (aa)	-	-
MGP_WSBEiJ_T0058422	-	5073	XM_006500486	MGP_WSBEiJ_P0058422	1067 (aa)	XP_006500549	Q8BX22
MGP_WSBEiJ_T0058423	-	3741	-	MGP_WSBEiJ_P0058423	623 (aa)	-	-
MGP_WSBEiJ_T0058428	-	328	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_WSBEiJ_G0026178's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_WSBEiJ_G0026178's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_WSBEiJ_G0026178	Sall4	73	53.333	MGP_WSBEiJ_G0023871	Zfp236	81	53.333
MGP_WSBEiJ_G0026178	Sall4	98	84.507	MGP_WSBEiJ_G0023868	Sall3	66	65.385
MGP_WSBEiJ_G0026178	Sall4	100	64.706	MGP_WSBEiJ_G0033052	Sall1	95	64.706