EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_WSBEiJ_G0026432 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc4l
Alias: C330050A14Rik|EG241989
Full Name: poly(A) binding protein%2C cytoplasmic 4-like
Gene Type: protein_coding
Species: Mus_musculus_wsbeij
Status: putative
Strand: Minus strand
Length: 6004 bases
Position: chr3:44269312-44275315
Accession: 3643087
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_WSBEiJ_P0059631	RRM_5	PF13893.6	1.6e-13	1	3
MGP_WSBEiJ_P0059631	RRM_5	PF13893.6	1.6e-13	2	3
MGP_WSBEiJ_P0059631	RRM_5	PF13893.6	1.6e-13	3	3
MGP_WSBEiJ_P0059632	RRM_5	PF13893.6	1.6e-13	1	3
MGP_WSBEiJ_P0059632	RRM_5	PF13893.6	1.6e-13	2	3
MGP_WSBEiJ_P0059632	RRM_5	PF13893.6	1.6e-13	3	3
MGP_WSBEiJ_P0059631	RRM_1	PF00076.22	4.7e-83	1	4
MGP_WSBEiJ_P0059631	RRM_1	PF00076.22	4.7e-83	2	4
MGP_WSBEiJ_P0059631	RRM_1	PF00076.22	4.7e-83	3	4
MGP_WSBEiJ_P0059631	RRM_1	PF00076.22	4.7e-83	4	4
MGP_WSBEiJ_P0059632	RRM_1	PF00076.22	4.7e-83	1	4
MGP_WSBEiJ_P0059632	RRM_1	PF00076.22	4.7e-83	2	4
MGP_WSBEiJ_P0059632	RRM_1	PF00076.22	4.7e-83	3	4
MGP_WSBEiJ_P0059632	RRM_1	PF00076.22	4.7e-83	4	4
MGP_WSBEiJ_P0059633	RRM_1	PF00076.22	1.8e-40	1	2
MGP_WSBEiJ_P0059633	RRM_1	PF00076.22	1.8e-40	2	2
MGP_WSBEiJ_P0059634	RRM_1	PF00076.22	1.9e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_WSBEiJ_T0059631	-	5232	XM_006500774	MGP_WSBEiJ_P0059631	370 (aa)	XP_006500837	A0A0A6YWT2
MGP_WSBEiJ_T0059632	-	5198	-	MGP_WSBEiJ_P0059632	370 (aa)	-	-
MGP_WSBEiJ_T0059633	-	723	-	MGP_WSBEiJ_P0059633	172 (aa)	-	-
MGP_WSBEiJ_T0059634	-	467	-	MGP_WSBEiJ_P0059634	50 (aa)	-	-

Gene Model

Click here to download MGP_WSBEiJ_G0026432's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_WSBEiJ_G0026432's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_WSBEiJ_G0026432	Pabpc4l	96	36.145	MGP_WSBEiJ_G0033593	Elavl3	90	36.145
MGP_WSBEiJ_G0026432	Pabpc4l	89	31.875	MGP_WSBEiJ_G0028077	Trnau1ap	88	34.211
MGP_WSBEiJ_G0026432	Pabpc4l	96	34.940	MGP_WSBEiJ_G0027657	Elavl2	89	34.940
MGP_WSBEiJ_G0026432	Pabpc4l	96	30.065	MGP_WSBEiJ_G0027789	Elavl4	70	35.484
MGP_WSBEiJ_G0026432	Pabpc4l	98	64.497	MGP_WSBEiJ_G0022441	Pabpc6	58	64.497
MGP_WSBEiJ_G0026432	Pabpc4l	52	31.461	MGP_WSBEiJ_G0028157	Srsf10	50	32.500
MGP_WSBEiJ_G0026432	Pabpc4l	95	68.098	MGP_WSBEiJ_G0023640	Pabpc2	61	64.167
MGP_WSBEiJ_G0026432	Pabpc4l	95	30.539	MGP_WSBEiJ_G0030144	Tia1	95	30.000
MGP_WSBEiJ_G0026432	Pabpc4l	94	30.464	MGP_WSBEiJ_G0032466	Elavl1	91	30.464
MGP_WSBEiJ_G0026432	Pabpc4l	97	69.277	MGP_WSBEiJ_G0021110	Pabpc1	88	69.277
MGP_WSBEiJ_G0026432	Pabpc4l	94	33.333	MGP_WSBEiJ_G0032221	Tial1	99	31.618
MGP_WSBEiJ_G0026432	Pabpc4l	95	60.736	MGP_WSBEiJ_G0026082	Pabpc1l	59	60.736
MGP_WSBEiJ_G0026432	Pabpc4l	65	34.211	MGP_WSBEiJ_G0025390	Celf1	57	37.879
MGP_WSBEiJ_G0026432	Pabpc4l	83	34.286	MGP_WSBEiJ_G0034647	Rbm3	90	35.385
MGP_WSBEiJ_G0026432	Pabpc4l	98	68.712	MGP_WSBEiJ_G0017782	-	88	68.712
MGP_WSBEiJ_G0026432	Pabpc4l	97	68.493	MGP_WSBEiJ_G0027947	-	100	69.565
MGP_WSBEiJ_G0026432	Pabpc4l	97	57.865	MGP_WSBEiJ_G0035146	Pabpc5	96	57.967