EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_WSBEiJ_G0029029 (Gene tree)
Gene ID: -
Gene Symbol: Gfi1
Alias: AW495828|Gfi-1|Pal-1|Pal1
Full Name: growth factor independent 1
Gene Type: protein_coding
Species: Mus_musculus_wsbeij
Status: putative
Strand: Minus strand
Length: 10108 bases
Position: chr5:108818524-108828631
Accession: 103170
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_WSBEiJ_P0071867	zf-C2H2	PF00096.26	4.9e-28	1	6
MGP_WSBEiJ_P0071867	zf-C2H2	PF00096.26	4.9e-28	2	6
MGP_WSBEiJ_P0071867	zf-C2H2	PF00096.26	4.9e-28	3	6
MGP_WSBEiJ_P0071867	zf-C2H2	PF00096.26	4.9e-28	4	6
MGP_WSBEiJ_P0071867	zf-C2H2	PF00096.26	4.9e-28	5	6
MGP_WSBEiJ_P0071867	zf-C2H2	PF00096.26	4.9e-28	6	6
MGP_WSBEiJ_P0071868	zf-C2H2	PF00096.26	4.9e-28	1	6
MGP_WSBEiJ_P0071868	zf-C2H2	PF00096.26	4.9e-28	2	6
MGP_WSBEiJ_P0071868	zf-C2H2	PF00096.26	4.9e-28	3	6
MGP_WSBEiJ_P0071868	zf-C2H2	PF00096.26	4.9e-28	4	6
MGP_WSBEiJ_P0071868	zf-C2H2	PF00096.26	4.9e-28	5	6
MGP_WSBEiJ_P0071868	zf-C2H2	PF00096.26	4.9e-28	6	6
MGP_WSBEiJ_P0071869	zf-C2H2	PF00096.26	1.5e-27	1	6
MGP_WSBEiJ_P0071869	zf-C2H2	PF00096.26	1.5e-27	2	6
MGP_WSBEiJ_P0071869	zf-C2H2	PF00096.26	1.5e-27	3	6
MGP_WSBEiJ_P0071869	zf-C2H2	PF00096.26	1.5e-27	4	6
MGP_WSBEiJ_P0071869	zf-C2H2	PF00096.26	1.5e-27	5	6
MGP_WSBEiJ_P0071869	zf-C2H2	PF00096.26	1.5e-27	6	6
MGP_WSBEiJ_P0071870	zf-C2H2	PF00096.26	9.3e-25	1	4
MGP_WSBEiJ_P0071870	zf-C2H2	PF00096.26	9.3e-25	2	4
MGP_WSBEiJ_P0071870	zf-C2H2	PF00096.26	9.3e-25	3	4
MGP_WSBEiJ_P0071870	zf-C2H2	PF00096.26	9.3e-25	4	4
MGP_WSBEiJ_P0071870	zf-met	PF12874.7	2.2e-08	1	1
MGP_WSBEiJ_P0071867	zf-met	PF12874.7	2.5e-07	1	1
MGP_WSBEiJ_P0071868	zf-met	PF12874.7	2.5e-07	1	1
MGP_WSBEiJ_P0071869	zf-met	PF12874.7	4.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_WSBEiJ_T0071867	-	2648	XM_006534791	MGP_WSBEiJ_P0071867	423 (aa)	XP_006534854	A0A0R4J292
MGP_WSBEiJ_T0071870	-	1482	-	MGP_WSBEiJ_P0071870	135 (aa)	-	-
MGP_WSBEiJ_T0071871	-	689	-	MGP_WSBEiJ_P0071871	186 (aa)	-	-
MGP_WSBEiJ_T0071869	-	2639	-	MGP_WSBEiJ_P0071869	489 (aa)	-	-
MGP_WSBEiJ_T0071868	-	2860	-	MGP_WSBEiJ_P0071868	423 (aa)	-	-

Gene Model

Click here to download MGP_WSBEiJ_G0029029's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_WSBEiJ_G0029029's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_WSBEiJ_G0029029	Gfi1	100	44.882	MGP_WSBEiJ_G0031267	Zfp715	62	44.882
MGP_WSBEiJ_G0029029	Gfi1	99	45.133	MGP_WSBEiJ_G0030006	Prdm5	75	43.846
MGP_WSBEiJ_G0029029	Gfi1	100	46.296	MGP_WSBEiJ_G0030971	Zfp61	57	46.296
MGP_WSBEiJ_G0029029	Gfi1	100	48.062	MGP_WSBEiJ_G0030730	Zfp628	54	48.062
MGP_WSBEiJ_G0029029	Gfi1	100	46.018	MGP_WSBEiJ_G0020024	Zfp759	88	46.018
MGP_WSBEiJ_G0029029	Gfi1	100	47.788	MGP_WSBEiJ_G0020023	Rslcan18	71	47.788
MGP_WSBEiJ_G0029029	Gfi1	100	39.535	MGP_WSBEiJ_G0033112	Zfp319	93	40.116
MGP_WSBEiJ_G0029029	Gfi1	100	42.857	MGP_WSBEiJ_G0022552	Zscan10	77	42.771
MGP_WSBEiJ_G0029029	Gfi1	100	46.457	MGP_WSBEiJ_G0033271	Zfp1	60	46.457
MGP_WSBEiJ_G0029029	Gfi1	100	49.254	MGP_WSBEiJ_G0021323	Zfp251	74	47.024
MGP_WSBEiJ_G0029029	Gfi1	100	49.219	MGP_WSBEiJ_G0028696	Zbtb49	62	51.786
MGP_WSBEiJ_G0029029	Gfi1	99	44.444	MGP_WSBEiJ_G0030741	Zfp784	71	44.444
MGP_WSBEiJ_G0029029	Gfi1	100	46.269	MGP_WSBEiJ_G0022528	Zfp51	80	46.269
MGP_WSBEiJ_G0029029	Gfi1	100	45.312	MGP_WSBEiJ_G0022526	Zfp677	79	45.312
MGP_WSBEiJ_G0029029	Gfi1	100	45.522	MGP_WSBEiJ_G0032894	Zfp709	82	43.976
MGP_WSBEiJ_G0029029	Gfi1	100	46.094	MGP_WSBEiJ_G0032895	Zfp882	85	46.094
MGP_WSBEiJ_G0029029	Gfi1	100	43.307	MGP_WSBEiJ_G0022547	Zfp945	78	40.237
MGP_WSBEiJ_G0029029	Gfi1	99	45.714	MGP_WSBEiJ_G0031001	Zfp574	62	43.925
MGP_WSBEiJ_G0029029	Gfi1	100	47.863	MGP_WSBEiJ_G0026141	Zfp334	62	47.333
MGP_WSBEiJ_G0029029	Gfi1	99	50.667	MGP_WSBEiJ_G0030348	Zfp637	71	43.590
MGP_WSBEiJ_G0029029	Gfi1	99	47.368	MGP_WSBEiJ_G0030738	Zfp865	66	46.753
MGP_WSBEiJ_G0029029	Gfi1	99	45.038	MGP_WSBEiJ_G0032173	E430018J23Rik	81	42.197
MGP_WSBEiJ_G0029029	Gfi1	100	54.321	MGP_WSBEiJ_G0032171	Zfp768	50	53.488
MGP_WSBEiJ_G0029029	Gfi1	99	48.507	MGP_WSBEiJ_G0025717	Zfp661	62	48.507
MGP_WSBEiJ_G0029029	Gfi1	100	46.457	MGP_WSBEiJ_G0030972	Zfp94	66	46.457
MGP_WSBEiJ_G0029029	Gfi1	100	45.556	MGP_WSBEiJ_G0033600	Zfp872	78	45.556
MGP_WSBEiJ_G0029029	Gfi1	100	45.238	MGP_WSBEiJ_G0017760	Zfp867	80	45.238
MGP_WSBEiJ_G0029029	Gfi1	100	45.794	MGP_WSBEiJ_G0017621	Zfp454	65	45.794
MGP_WSBEiJ_G0029029	Gfi1	100	48.507	MGP_WSBEiJ_G0031137	Zfp420	98	48.507
MGP_WSBEiJ_G0029029	Gfi1	100	48.031	MGP_WSBEiJ_G0031074	Zfp974	86	48.031
MGP_WSBEiJ_G0029029	Gfi1	99	47.287	MGP_WSBEiJ_G0029875	Repin1	90	47.287
MGP_WSBEiJ_G0029029	Gfi1	100	48.031	MGP_WSBEiJ_G0020042	Zfp748	92	48.447
MGP_WSBEiJ_G0029029	Gfi1	100	48.031	MGP_WSBEiJ_G0017627	Zfp354a	73	48.031
MGP_WSBEiJ_G0029029	Gfi1	100	47.368	MGP_WSBEiJ_G0026179	Zfp64	70	38.298
MGP_WSBEiJ_G0029029	Gfi1	100	48.276	MGP_WSBEiJ_G0017713	Zfp672	90	48.276
MGP_WSBEiJ_G0029029	Gfi1	100	46.739	MGP_WSBEiJ_G0023871	Zfp236	54	46.739
MGP_WSBEiJ_G0029029	Gfi1	100	48.031	MGP_WSBEiJ_G0030965	Zfp235	61	48.031