EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_WSBEiJ_G0029148 (Gene tree)
Gene ID: -
Gene Symbol: Msi1
Alias: Msi1|Msi1h|Musahi1|m-Msi-1
Full Name: musashi RNA-binding protein 1
Gene Type: protein_coding
Species: Mus_musculus_wsbeij
Status: putative
Strand: Plus strand
Length: 29624 bases
Position: chr5:117303371-117332994
Accession: 107376
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_WSBEiJ_P0072475	RRM_1	PF00076.22	6.8e-33	1	2
MGP_WSBEiJ_P0072475	RRM_1	PF00076.22	6.8e-33	2	2
MGP_WSBEiJ_P0072476	RRM_1	PF00076.22	1.5e-28	1	2
MGP_WSBEiJ_P0072476	RRM_1	PF00076.22	1.5e-28	2	2
MGP_WSBEiJ_P0072480	RRM_1	PF00076.22	1.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_WSBEiJ_T0072475	-	2987	-	MGP_WSBEiJ_P0072475	362 (aa)	-	-
MGP_WSBEiJ_T0072474	-	2628	-	-	- (aa)	-	-
MGP_WSBEiJ_T0072477	-	367	-	-	- (aa)	-	-
MGP_WSBEiJ_T0072476	-	807	-	MGP_WSBEiJ_P0072476	268 (aa)	-	-
MGP_WSBEiJ_T0072480	-	726	-	MGP_WSBEiJ_P0072480	196 (aa)	-	-
MGP_WSBEiJ_T0072481	-	596	-	-	- (aa)	-	-
MGP_WSBEiJ_T0072479	-	581	-	-	- (aa)	-	-
MGP_WSBEiJ_T0072478	-	806	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_WSBEiJ_G0029148's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_WSBEiJ_G0029148's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_WSBEiJ_G0029148	Msi1	59	49.485	MGP_WSBEiJ_G0028968	Hnrnpd	100	68.000
MGP_WSBEiJ_G0029148	Msi1	56	41.379	MGP_WSBEiJ_G0032221	Tial1	69	31.469
MGP_WSBEiJ_G0029148	Msi1	58	48.052	MGP_WSBEiJ_G0028970	Hnrnpdl	75	39.676
MGP_WSBEiJ_G0029148	Msi1	61	43.750	MGP_WSBEiJ_G0029908	Hnrnpa2b1	91	41.379
MGP_WSBEiJ_G0029148	Msi1	88	42.308	MGP_WSBEiJ_G0016882	Dazap1	98	44.311
MGP_WSBEiJ_G0029148	Msi1	57	42.949	MGP_WSBEiJ_G0019952	Hnrnpa0	59	43.646
MGP_WSBEiJ_G0029148	Msi1	51	38.983	MGP_WSBEiJ_G0016876	Cirbp	87	40.351
MGP_WSBEiJ_G0029148	Msi1	58	48.052	MGP_WSBEiJ_G0017632	Hnrnpab	79	40.800
MGP_WSBEiJ_G0029148	Msi1	62	34.021	MGP_WSBEiJ_G0028324	Tardbp	79	34.021
MGP_WSBEiJ_G0029148	Msi1	99	75.665	MGP_WSBEiJ_G0018283	Msi2	100	90.323
MGP_WSBEiJ_G0029148	Msi1	61	51.064	MGP_WSBEiJ_G0026201	Rbm38	66	46.809