EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_WSBEiJ_G0030006 (Gene tree)
Gene ID: -
Gene Symbol: Prdm5
Alias: 4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2
Full Name: PR domain containing 5
Gene Type: protein_coding
Species: Mus_musculus_wsbeij
Status: putative
Strand: Plus strand
Length: 167236 bases
Position: chr6:65068980-65236215
Accession: 1918029
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_WSBEiJ_P0076642	zf-C2H2	PF00096.26	6.8e-59	1	9
MGP_WSBEiJ_P0076642	zf-C2H2	PF00096.26	6.8e-59	2	9
MGP_WSBEiJ_P0076642	zf-C2H2	PF00096.26	6.8e-59	3	9
MGP_WSBEiJ_P0076642	zf-C2H2	PF00096.26	6.8e-59	4	9
MGP_WSBEiJ_P0076642	zf-C2H2	PF00096.26	6.8e-59	5	9
MGP_WSBEiJ_P0076642	zf-C2H2	PF00096.26	6.8e-59	6	9
MGP_WSBEiJ_P0076642	zf-C2H2	PF00096.26	6.8e-59	7	9
MGP_WSBEiJ_P0076642	zf-C2H2	PF00096.26	6.8e-59	8	9
MGP_WSBEiJ_P0076642	zf-C2H2	PF00096.26	6.8e-59	9	9
MGP_WSBEiJ_P0076637	zf-C2H2	PF00096.26	1.2e-58	1	9
MGP_WSBEiJ_P0076637	zf-C2H2	PF00096.26	1.2e-58	2	9
MGP_WSBEiJ_P0076637	zf-C2H2	PF00096.26	1.2e-58	3	9
MGP_WSBEiJ_P0076637	zf-C2H2	PF00096.26	1.2e-58	4	9
MGP_WSBEiJ_P0076637	zf-C2H2	PF00096.26	1.2e-58	5	9
MGP_WSBEiJ_P0076637	zf-C2H2	PF00096.26	1.2e-58	6	9
MGP_WSBEiJ_P0076637	zf-C2H2	PF00096.26	1.2e-58	7	9
MGP_WSBEiJ_P0076637	zf-C2H2	PF00096.26	1.2e-58	8	9
MGP_WSBEiJ_P0076637	zf-C2H2	PF00096.26	1.2e-58	9	9
MGP_WSBEiJ_P0076640	zf-C2H2	PF00096.26	1e-48	1	9
MGP_WSBEiJ_P0076640	zf-C2H2	PF00096.26	1e-48	2	9
MGP_WSBEiJ_P0076640	zf-C2H2	PF00096.26	1e-48	3	9
MGP_WSBEiJ_P0076640	zf-C2H2	PF00096.26	1e-48	4	9
MGP_WSBEiJ_P0076640	zf-C2H2	PF00096.26	1e-48	5	9
MGP_WSBEiJ_P0076640	zf-C2H2	PF00096.26	1e-48	6	9
MGP_WSBEiJ_P0076640	zf-C2H2	PF00096.26	1e-48	7	9
MGP_WSBEiJ_P0076640	zf-C2H2	PF00096.26	1e-48	8	9
MGP_WSBEiJ_P0076640	zf-C2H2	PF00096.26	1e-48	9	9
MGP_WSBEiJ_P0076639	zf-C2H2	PF00096.26	8.1e-27	1	5
MGP_WSBEiJ_P0076639	zf-C2H2	PF00096.26	8.1e-27	2	5
MGP_WSBEiJ_P0076639	zf-C2H2	PF00096.26	8.1e-27	3	5
MGP_WSBEiJ_P0076639	zf-C2H2	PF00096.26	8.1e-27	4	5
MGP_WSBEiJ_P0076639	zf-C2H2	PF00096.26	8.1e-27	5	5
MGP_WSBEiJ_P0076642	zf-met	PF12874.7	9.6e-21	1	3
MGP_WSBEiJ_P0076642	zf-met	PF12874.7	9.6e-21	2	3
MGP_WSBEiJ_P0076642	zf-met	PF12874.7	9.6e-21	3	3
MGP_WSBEiJ_P0076637	zf-met	PF12874.7	1.7e-20	1	3
MGP_WSBEiJ_P0076637	zf-met	PF12874.7	1.7e-20	2	3
MGP_WSBEiJ_P0076637	zf-met	PF12874.7	1.7e-20	3	3
MGP_WSBEiJ_P0076640	zf-met	PF12874.7	8.7e-17	1	3
MGP_WSBEiJ_P0076640	zf-met	PF12874.7	8.7e-17	2	3
MGP_WSBEiJ_P0076640	zf-met	PF12874.7	8.7e-17	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_WSBEiJ_T0076639	-	984	-	MGP_WSBEiJ_P0076639	221 (aa)	-	-
MGP_WSBEiJ_T0076638	-	1907	-	-	- (aa)	-	-
MGP_WSBEiJ_T0076637	-	2155	XM_006506600	MGP_WSBEiJ_P0076637	599 (aa)	XP_006506663	Q9CXE0
MGP_WSBEiJ_T0076642	-	1740	-	MGP_WSBEiJ_P0076642	579 (aa)	-	-
MGP_WSBEiJ_T0076643	-	1920	-	-	- (aa)	-	-
MGP_WSBEiJ_T0076640	-	1488	-	MGP_WSBEiJ_P0076640	415 (aa)	-	-
MGP_WSBEiJ_T0076641	-	4130	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_WSBEiJ_G0030006's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_WSBEiJ_G0030006's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_WSBEiJ_G0030006	Prdm5	61	45.045	MGP_WSBEiJ_G0025479	Wt1	55	40.876
MGP_WSBEiJ_G0030006	Prdm5	76	40.000	MGP_WSBEiJ_G0018345	Zfp652	50	36.242
MGP_WSBEiJ_G0030006	Prdm5	70	48.315	MGP_WSBEiJ_G0022547	Zfp945	77	48.315
MGP_WSBEiJ_G0030006	Prdm5	78	34.397	MGP_WSBEiJ_G0033112	Zfp319	86	39.041
MGP_WSBEiJ_G0030006	Prdm5	78	38.571	MGP_WSBEiJ_G0017621	Zfp454	64	47.778
MGP_WSBEiJ_G0030006	Prdm5	91	39.062	MGP_WSBEiJ_G0021323	Zfp251	88	39.062
MGP_WSBEiJ_G0030006	Prdm5	84	43.277	MGP_WSBEiJ_G0020023	Rslcan18	71	39.200
MGP_WSBEiJ_G0030006	Prdm5	83	38.014	MGP_WSBEiJ_G0020024	Zfp759	94	38.870
MGP_WSBEiJ_G0030006	Prdm5	77	42.941	MGP_WSBEiJ_G0025717	Zfp661	65	42.941
MGP_WSBEiJ_G0030006	Prdm5	68	42.361	MGP_WSBEiJ_G0029875	Repin1	92	42.069
MGP_WSBEiJ_G0030006	Prdm5	91	48.387	MGP_WSBEiJ_G0031137	Zfp420	97	48.387
MGP_WSBEiJ_G0030006	Prdm5	74	39.310	MGP_WSBEiJ_G0015964	Zbtb41	52	33.010
MGP_WSBEiJ_G0030006	Prdm5	96	39.683	MGP_WSBEiJ_G0022528	Zfp51	98	39.683
MGP_WSBEiJ_G0030006	Prdm5	67	46.667	MGP_WSBEiJ_G0031001	Zfp574	85	30.051
MGP_WSBEiJ_G0030006	Prdm5	74	42.331	MGP_WSBEiJ_G0030971	Zfp61	53	41.525
MGP_WSBEiJ_G0030006	Prdm5	90	35.235	MGP_WSBEiJ_G0022552	Zscan10	88	44.915
MGP_WSBEiJ_G0030006	Prdm5	72	48.760	MGP_WSBEiJ_G0031267	Zfp715	65	48.760
MGP_WSBEiJ_G0030006	Prdm5	86	39.316	MGP_WSBEiJ_G0017627	Zfp354a	80	39.316
MGP_WSBEiJ_G0030006	Prdm5	90	46.067	MGP_WSBEiJ_G0026141	Zfp334	75	46.067
MGP_WSBEiJ_G0030006	Prdm5	84	40.530	MGP_WSBEiJ_G0033600	Zfp872	99	40.530
MGP_WSBEiJ_G0030006	Prdm5	90	42.609	MGP_WSBEiJ_G0032895	Zfp882	97	42.609
MGP_WSBEiJ_G0030006	Prdm5	76	39.796	MGP_WSBEiJ_G0032894	Zfp709	80	45.000
MGP_WSBEiJ_G0030006	Prdm5	74	48.913	MGP_WSBEiJ_G0030972	Zfp94	73	48.913
MGP_WSBEiJ_G0030006	Prdm5	84	36.545	MGP_WSBEiJ_G0017760	Zfp867	95	36.545
MGP_WSBEiJ_G0030006	Prdm5	81	31.553	MGP_WSBEiJ_G0017324	Patz1	53	36.047
MGP_WSBEiJ_G0030006	Prdm5	75	41.250	MGP_WSBEiJ_G0034557	Zfp651	51	34.733
MGP_WSBEiJ_G0030006	Prdm5	87	46.739	MGP_WSBEiJ_G0023871	Zfp236	78	43.860
MGP_WSBEiJ_G0030006	Prdm5	88	42.857	MGP_WSBEiJ_G0017713	Zfp672	86	44.286
MGP_WSBEiJ_G0030006	Prdm5	84	36.243	MGP_WSBEiJ_G0020042	Zfp748	92	39.735
MGP_WSBEiJ_G0030006	Prdm5	75	43.846	MGP_WSBEiJ_G0029029	Gfi1	99	45.133
MGP_WSBEiJ_G0030006	Prdm5	74	40.104	MGP_WSBEiJ_G0030730	Zfp628	59	40.994
MGP_WSBEiJ_G0030006	Prdm5	84	32.735	MGP_WSBEiJ_G0030738	Zfp865	78	32.895
MGP_WSBEiJ_G0030006	Prdm5	75	34.545	MGP_WSBEiJ_G0026179	Zfp64	69	31.561
MGP_WSBEiJ_G0030006	Prdm5	78	44.444	MGP_WSBEiJ_G0030348	Zfp637	83	46.479
MGP_WSBEiJ_G0030006	Prdm5	69	48.571	MGP_WSBEiJ_G0033354	Snai3	55	42.446
MGP_WSBEiJ_G0030006	Prdm5	78	36.184	MGP_WSBEiJ_G0031074	Zfp974	88	37.354
MGP_WSBEiJ_G0030006	Prdm5	73	44.286	MGP_WSBEiJ_G0030965	Zfp235	68	39.608
MGP_WSBEiJ_G0030006	Prdm5	69	48.571	MGP_WSBEiJ_G0030964	Zfp112	68	40.072
MGP_WSBEiJ_G0030006	Prdm5	73	40.562	MGP_WSBEiJ_G0032171	Zfp768	53	43.571
MGP_WSBEiJ_G0030006	Prdm5	74	37.838	MGP_WSBEiJ_G0032173	E430018J23Rik	87	37.838
MGP_WSBEiJ_G0030006	Prdm5	95	43.165	MGP_WSBEiJ_G0022526	Zfp677	78	35.690
MGP_WSBEiJ_G0030006	Prdm5	67	50.847	MGP_WSBEiJ_G0033271	Zfp1	67	40.167
MGP_WSBEiJ_G0030006	Prdm5	75	30.909	MGP_WSBEiJ_G0033042	Zfp423	92	37.895
MGP_WSBEiJ_G0030006	Prdm5	79	40.244	MGP_WSBEiJ_G0028696	Zbtb49	96	45.070